HHsearch 1.5 NAME c3j20L_ FAM FILE c3j20L_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j20L_.a3m DATE Wed Jan 9 15:55:39 2013 LENG 102 match states, 102 columns in multiple alignment FILT 105 out of 159 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.6 EVD 0.4211 -0.4147 SEQ >ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHHHHSSSCEEEEEEEEEEEEECCEEECCSSCCSSCCEEECCEEEEEEEEEEEECHHHHHHHTTSCCCSSCEEEEEE EC >sa_dssp ECDBCACACBDDEEBAEDABEDBCEDADEEEBECDDCDEDDDEEDDDEDEECEEEEEECEDCEEDDDDBCCBACBCBEEECBEDADECECBEEBDCDDDD DE >ss_pred CEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEEECCHHHHHHHHCCCCCCCCEEEEEE EC >ss_conf 9699999998088999999999999999719811234038980489988540368776302468999999999994898999998615787984799999 89 >Consensus xxkirIxlxsxdxxxLxxxxxxixxxaxxxxixvxgpxxLPtkxxxxtvlrSPxxxkxsrxeqfexrxhkRxixixxxxxxxxxlxxxxlPxgVxixixx xx >c3j20L_ MQKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL IS >UniRef50_B6JWT5(82-185:240) 30S ribosomal protein S10 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JWT5_SCHJY E=3e-06 s/c=0.51 id=20% cov=99% VECAQIMFKSYELSKLEFFADFAVRCAYYMNIPVRGPTPLPKKIQRWTLVRSPFVHK-ASQENFERITYSRLLRLfNVNSETLEVLlgyLNTSIVPTISM DVTVY- >UniRef50_Q4U8J5(203-300:428) 30S ribosomal protein S10-like protein, putative n=2 Tax=Theileria RepID=Q4U8J5_THEAN E=2e-11 s/c=0.72 id=24% cov=91% ----RVKIYSYYRHLASLAVKRIQLGLKDIpNLKVTNPMALPMRRKRWCYLSSPFVDKRSK-DLIEIQEHVRVVDIvpvdKGNPRNFTGLLMVPMPEFVS FD----- >UniRef50_UPI000186E630(43-147:164) mitochondrial ribosomal protein S10, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E630 E=2e-13 s/c=0.74 id=19% cov=99% -KTITLEIKSSEPEVLRSYSRFVKTAAECLNINLGEIKTLPkPTKRRFTVLKSVFVHRKHLV-QYEIRTHYLWMNFNkltgSTADTFLEYIERMLPEGVG MKVTKVS >UniRef50_B0R3C7(6-101:111) Ribosomal protein S10 homolog n=5 Tax=Halobacteriaceae RepID=B0R3C7_HALS3 E=4e-16 s/c=0.89 id=25% cov=95% ----KLSLESGDRTALDAVVSDIKETCRRKGARLKGPHSDAPAEIRVPLYARLGGDSAEKTNDWQYTVYRRRVELHGHDDLARDIMERDFPASVHVEAEV -- >UniRef50_Q2S4M9(137-233:238) Ribosomal protein S10p/S20e, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S4M9_SALRD E=6e-12 s/c=0.74 id=21% cov=92% -----IRLSSTDHQMVDRAVRQITQFVSDRQPRAPVAVPLPVGKKAAADERQGRTNGpPSRDESFSQHIHHRAIEMwTAGPKLVAQLGQVQLPEAVDVTV ---- >UniRef50_Q8W9Q1(12-103:116) Ribosomal protein S10 n=1 Tax=Mesostigma viride RepID=Q8W9Q1_MESVI E=5e-11 s/c=0.75 id=22% cov=89% ---IQLQLFSFDAKSLEKACACIKNSTD------SAKIFLPRKRTLYTVLRSPHIDKKSR-EQFVWTRKKRSIFLTGTPNILLEnLKNGSFAPQVQILIK I-- >UniRef50_C4VAZ0(18-118:119) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VAZ0_NOSCE E=8e-08 s/c=0.58 id=18% cov=99% MMKVHIDLSTIKKNAISNACEKFEAFAGNFINDIKKET-LPKQTGIVPTLKTPCGQGTKTWAKYKIIVHQvRYVITSSHDQLEKVIQFLKNFPDIDINMG IY- >UniRef50_UPI000194BA1A(91-187:212) PREDICTED: mitochondrial ribosomal protein L48 n=1 Tax=Taeniopygia guttata RepID=UPI000194BA1A E=0.0005 s/c=0.47 id=17% cov=92% ---INIQMTSYDLCLVEHFAQYVHRLCNRLSIQVNESYAMPTRTNEVLFLEE---KGSKMQLDAVLTTHQRVVQIRGLSSTFapilLEIIQSSQPEGVHL LMK--- >UniRef50_UPI0001926F28(70-172:191) PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926F28 E=1e-08 s/c=0.59 id=18% cov=97% --KVLLTISSTDEAILQTYANYVTKAAKIVDVKVSKSFSMPAIPETVKAKILSEDNSNQKQVEYAFKNYRRIIEVSDLcadkSDLFIEFVQKGLPSGVKI LMEL-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 2144 * 4588 1105 * * * * * * 1903 * * 1 0 * * * * * * 4495 0 0 Q 2 * * * 2876 * * 3121 5145 2704 * 4598 * * 1444 3263 * 5252 * * 5164 2 0 * * * * * * 5505 0 0 K 3 * 4829 5607 4285 * * * * 841 * * 5333 * 4816 3363 5427 3398 4084 * * 3 0 * * * * * * 5809 0 0 A 4 2848 6378 * * * * * 961 * 3681 4850 * * * * * * 2297 * 5697 4 0 * * * * * * 6165 0 0 R 5 4991 5615 * 5200 * * 5538 * 3156 3688 * 3333 * 4232 1239 4343 3811 * * 6259 5 0 * * * * * * 6589 0 0 I 6 * * * * * * * 907 * 1931 6300 * * * * * * 2382 * * 6 0 * * * * * * 6788 0 0 K 7 * 6056 4910 4330 * * 5704 4478 2019 6359 6674 4828 * 2968 2878 5131 2271 4862 * * 7 0 * * * * * * 6790 0 0 I 8 * * * * 4935 * * 1828 * 1029 3885 * * * * * * 2966 * * 8 0 * * * * * * 6755 0 0 A 9 5553 * * 3656 6616 * 7039 * 1717 6707 * 6597 * 4092 2680 2989 2990 4984 7039 4271 9 0 * * * * * * 6754 0 0 S 10 3571 6866 * * * 1882 * * * * * * * * * 718 5161 * * * 10 0 * * * * * * 6756 0 0 T 11 5930 * * * 2229 4446 3286 5170 4824 5293 * 5065 * 5855 5354 5030 2878 6966 * 1801 11 14 6667 * 0 * * * 6755 1000 0 N 12 * * 956 3189 4696 * 4616 * 4233 * * 2996 * * * 3410 * * 7176 5968 12 0 * * * * * * 6755 0 0 V 13 3590 6833 * 4015 3649 * 2890 * 3728 3144 5482 6680 3077 * 3808 4137 7061 3219 6284 4774 13 0 * * * * * * 6756 0 0 R 14 2592 6066 3794 3713 5486 5059 5289 5251 2734 * 5797 4966 3871 3960 3153 4703 4451 6365 * 5315 14 0 * * * * * * 6756 0 0 S 15 3121 * 4722 6547 6110 5435 5349 3741 4252 2161 5386 4083 7000 4594 * 3914 4305 2623 * 6365 15 14 6736 * 1000 1000 * * 6756 1000 0 L 16 5972 * * * * * * 2885 * 550 * * * * * * * 2594 * * 16 0 * * * * * * 6756 0 0 D 17 5663 * 1799 1613 * * 7066 4636 3703 * * 3073 * 3754 5905 4972 * * * * 17 0 * * * * * * 6756 0 0 E 18 4290 * 4396 4478 4804 7000 4197 5439 2718 4191 7180 3540 * 3976 3390 2452 4382 5557 * 5331 18 0 * * * * * * 6756 0 0 V 19 2373 5417 * * 2886 * 6110 5841 * 5736 * 8161 * 6309 * 3233 5444 2373 * 1949 19 17 6455 * 2000 415 * * 6756 1000 0 A 20 2436 2518 * 4688 6110 5825 * 6365 * 4381 6750 * * 3520 * 3356 3251 2249 * * 20 0 * * * * * * 6756 0 0 N 21 3717 * 3260 3179 4302 4541 5868 6794 2568 6665 * 3743 * 3535 3464 3446 4161 * 6424 * 21 0 * * * * * * 6756 0 0 Q 22 7365 6627 4507 3086 1904 5488 * * 2871 3949 6121 4647 * 3505 4725 5335 5095 6309 6240 3816 22 0 * * * * * * 6756 0 0 I 23 2896 * * * 3744 * * 1160 * 2617 6619 * * * * * 6708 2637 * * 23 21 6125 * 0 * * * 6772 1511 0 K 24 4465 4724 * 5341 6308 * 3025 3078 2515 3735 5336 6369 6112 4163 6753 6007 3431 2908 * 5042 24 0 * * * * * * 6772 0 0 Q 25 5441 * 3624 2631 * 5262 4462 * 3069 3773 5903 3780 6112 4187 2415 3959 4602 7065 6466 * 25 0 * * * * * * 6772 0 0 I 26 2129 6782 * 5609 3962 4992 6755 2760 4037 3478 * 4856 * * 6452 3928 2766 4318 * 5061 26 0 * * * * * * 6772 0 0 A 27 1109 3477 * * * 3870 * 3454 * 3474 * 6707 * * * 5048 4557 3124 * * 27 0 * * * * * * 6772 0 0 E 28 4681 6072 4386 2914 6538 5975 4757 * 1528 * * 4456 * 5587 3274 3395 6333 * 6112 3973 28 15 * 6630 * * * * 6772 0 0 R 29 3460 5915 3900 3442 * 6419 5353 5650 3341 5085 * 3134 5680 3707 2839 4450 5153 4646 * 3542 29 25 5851 * 514 1738 * 0 6769 1552 1000 T 30 5794 * * 6748 3639 7011 * 4301 3602 1784 3189 5054 * 6122 5395 4064 2496 5650 * 5252 30 151 3738 5352 839 1181 * 0 6769 3031 1000 G 31 4688 * 3440 5073 * 1284 * 4921 5219 6758 * 2328 * 3403 6837 4130 * * * * 31 51 7036 5205 3459 138 1466 648 6787 1000 2012 V 32 3250 * 5847 5449 4157 5969 * 1599 * 2465 * 5916 5360 6585 * 4924 5984 2749 * 5475 32 0 * * * * 1924 441 6760 0 2417 R 33 5196 6414 3416 4148 * 5715 5604 4496 2273 6024 * 4787 3267 3634 3464 4389 3933 3641 * * 33 18 * 6310 * * 1300 752 6772 0 2055 M 34 4800 5004 * * 5452 * * 2431 6915 2405 4128 5464 * * 5713 5734 3774 1570 * * 34 25 * 5885 * * 515 1737 6774 0 1924 S 35 3709 7425 4332 4550 * 4314 7183 5637 2189 * 7148 5338 5403 5926 3445 2067 3767 4232 * * 35 15 * 6562 * * * 0 6689 0 1588 G 36 5284 5704 3922 3793 * 878 * * 2959 6505 * 5182 5771 * 5071 5762 * 4670 * * 36 0 * * * * * 0 6726 0 2089 P 37 4565 6523 * 3964 * 6214 * 5212 5006 5771 * 6590 967 5850 5743 3130 5073 3459 * * 37 0 * * * * 453 1893 6726 0 2089 I 38 5168 5402 6595 6044 3573 * 4455 1901 4728 6409 4601 * * 6500 7071 * 3630 2148 4834 3736 38 24 * 5937 * * * 0 6826 0 1000 P 39 2679 6584 6710 5676 4658 5280 6617 5402 * * 5375 4810 1406 * 2917 3790 5320 5873 6350 6809 39 0 * * * * 0 * 6758 0 1737 L 40 6406 * 6240 6605 4727 * 5843 4760 * 604 3360 5794 5734 4347 * 6466 7211 6230 * * 40 0 * * * * * * 6853 0 0 P 41 4632 * * 6679 * * * * 3683 * * * 228 * 5794 * * * * * 41 39 5237 * 0 * * * 6853 1479 0 T 42 4184 * * 6146 * * 5560 6775 3478 7379 4587 4826 2971 * 4090 5398 1186 4197 * 5392 42 15 6590 * 0 * * * 6853 1000 0 K 43 4770 * * 4049 * 5387 4605 4118 1386 * * 5274 * 3033 2418 4843 5165 * * * 43 16 6466 * 1000 1000 * * 6853 1000 0 R 44 5919 * 6037 3853 5250 * 4696 3120 2125 6357 * 6684 5704 * 2100 4923 3155 4453 * 5345 44 15 * 6577 * * * * 6856 0 0 I 45 5545 * 6793 2958 6061 5986 5000 3833 2992 2440 7055 6073 * 4204 2752 4585 3859 4764 6700 5910 45 0 * * * * * 0 6851 0 1000 R 46 5355 * * 4767 5949 * 5988 3325 2168 3403 * 5392 * 5748 1817 4145 5006 3713 * * 46 0 * * * * * 0 6851 0 1000 I 47 4690 * * 6819 2445 * * 2985 6601 4269 5715 * * 5252 6943 * 6600 2080 3095 2617 47 42 * 5122 * * 0 * 6851 0 1000 T 48 4975 3253 5836 * * * * 5446 4802 6058 5505 6619 3373 * 7044 5287 782 5129 * * 48 0 * * * * * 0 6800 0 1502 T 49 4708 * 5378 * 4506 * * 4298 6012 2938 5788 6416 * 4960 6094 * 2424 1259 * 5959 49 0 * * * * * 0 6800 0 1502 R 50 5890 * * 5378 6012 * 5788 3716 5618 1184 5078 3807 4706 * 2600 6155 * 5610 * 4317 50 23 * 6012 * * 0 * 6800 0 1502 K 51 5167 5839 * 6070 * * * 4968 1412 * * 5333 * 4400 1242 4755 * * * * 51 42 * 5138 * * * 0 6825 0 1000 S 52 4034 * 5273 5207 * 5380 * 6440 * 4455 * 5358 * 5297 3979 714 3606 * * * 52 56 * 4727 * * * 0 6762 0 1835 P 53 6509 * * * 5140 5282 * * 6628 3531 * 6460 493 * 6685 5399 5428 4069 * * 53 0 * * * * 2318 323 6698 0 2532 D 54 6535 2981 4720 5487 2348 5167 1280 * 5824 * * 5776 * * 4661 4393 * 5202 * 5968 54 0 * * * * 1015 985 6747 0 2318 G 55 3679 * 5574 6036 * 2155 5338 2783 4406 * * 5558 4632 * * 5845 4745 1610 * * 55 0 * * * * 0 * 6812 0 1401 E 56 6740 * 2147 3219 3842 * 2808 * 4211 * * 2259 * 3512 6559 * * * * 3577 56 11 * 7071 * * * * 6865 0 0 G 57 4441 * 5364 * * 1834 * * 1019 * * 6704 * * 5973 2942 * * * * 57 98 5387 4586 0 * 0 * 6873 1000 1000 S 58 5456 * 3404 4920 * * 5345 * 1385 * 6449 5224 5379 5903 4191 3033 2483 * * 7073 58 0 * * * * 0 * 6834 0 2593 A 59 3538 * * 4717 * * 3155 6055 2628 * * 3674 * 4916 5182 1432 5447 4743 * 5880 59 98 * 3934 * * * * 6865 0 0 T 60 * * * * * * * 4245 2767 5870 4521 * * 4999 1145 3830 2669 5129 * * 60 647 * 1469 * * 342 2244 6806 0 2700 F 61 6254 * 3866 4236 3957 5604 * * 5560 4893 4590 * * 2592 5358 * 4932 2957 2180 3165 61 340 * 2251 * * 0 * 6719 0 4531 D 62 3920 * 1933 1123 * * 6035 * * 5933 * 4837 * * * 3929 4890 4421 * * 62 0 * * * * 0 * 6635 0 2767 R 63 6927 * 4340 3791 5882 * 3091 * 4187 5249 * 3442 6191 1324 3667 4605 5076 * * * 63 0 * * * * * * 6865 0 0 W 64 4796 * * * 1086 * 4985 4611 * 6358 5845 * * * * * * * 3392 1758 64 0 * * * * * * 6865 0 0 E 65 5319 * 5049 782 * * 5121 6341 3900 6236 * 6689 * 3454 5882 4605 5151 4450 6781 * 65 0 * * * * * * 6865 0 0 L 66 7449 * * * 4035 * * 2262 7071 2237 2247 * * 5100 3006 7245 6011 4187 6679 4209 66 0 * * * * * * 6865 0 0 R 67 5921 * * 5348 * * 5393 4199 2550 * * 5428 * 4650 1088 4777 2956 6478 * * 67 0 * * * * * * 6865 0 0 V 68 * * * 5017 * * * 2300 5917 5402 4899 5701 * 4893 5150 5155 1404 2580 * 4717 68 0 * * * * * * 6896 0 0 H 69 * * * * 4415 * 939 * 4602 * 5216 6335 * 6357 * 5926 * * * 1633 69 0 * * * * * * 6896 0 0 K 70 4630 * 6211 3485 5443 4437 5002 6698 1358 5956 * 7628 * 4070 3078 4630 4684 5270 * 4258 70 24 5916 * 0 * * * 6928 1000 0 R 71 * 5217 * * * * * * 3701 6008 5853 * * 7398 306 6696 5415 6020 * * 71 0 * * * * * * 6924 0 0 L 72 4567 5681 5133 5854 5813 * * 3114 4378 1859 4817 4116 * * 4606 4430 4842 2790 6008 4063 72 0 * * * * * * 6924 0 0 I 73 * * * * 3630 * * 1098 * 2259 4159 * * * * * * 2418 * * 73 0 * * * * * * 6924 0 0 D 74 5878 * 1980 2760 6650 7095 5853 4143 4240 * 6220 4312 * 2432 4999 4629 5832 5329 6287 4015 74 64 4518 * 0 * * * 6924 2708 0 I 75 5847 * * * 4207 * * 1209 * 2034 3877 * * * * * 5914 2843 * 5180 75 338 2259 * 734 1326 * * 6924 4250 0 E 76 6548 * 2844 4264 5096 5215 3443 5621 3167 6923 * 3193 5260 4829 4209 2877 4134 6110 * 3688 76 114 3720 * 1738 514 * * 6916 2278 0 A 77 2093 3663 4101 * 4898 3024 * 5991 * 3698 * 3511 4506 * * 2505 4394 6016 * 6935 77 34 5408 * 1012 988 * * 6916 1969 0 D 78 6547 * 3869 5515 6386 4718 3437 6105 5415 3785 * 3103 3408 * 5660 3279 2010 3955 * * 78 89 4070 * 2643 252 * * 6929 2844 0 E 79 2621 * 2456 4693 * 5502 5789 * 4452 5027 * 7072 2104 4478 * 2788 4791 4874 * * 79 111 4062 6120 1783 495 * * 6900 2976 0 R 80 6453 * 2533 2520 * * 4637 5200 3118 * * 3601 4861 3303 3606 3255 4213 * * * 80 76 4294 * 1241 794 0 * 6835 2606 1000 A 81 3551 * 5441 4313 5973 * * 3513 * 2661 6421 4455 * 4683 * * 1554 2905 * 6725 81 70 4405 * 1954 431 * * 6837 2592 0 M 82 2970 * * 5779 2132 * * 2755 * 3139 4358 * 6380 * * * 5257 2253 5794 4329 82 27 5728 * 2000 415 * * 6837 1000 0 R 83 5334 * 2490 3469 * 6151 6504 3480 3263 2495 * 5549 5950 4449 3160 4079 4150 * * * 83 36 5346 * 1585 585 * * 6837 1585 0 Q 84 3572 * 3647 2201 6090 5094 * * 3145 4304 5037 5717 * 3207 3655 3976 4285 4082 * * 84 21 6124 * 0 * * * 6573 1000 0 I 85 * * * * 3280 * * 1938 * 1368 6510 6264 * * * * * 3548 * 2846 85 43 5085 * 1822 479 * * 6557 1599 0 M 86 4322 * * * * 5313 * 2404 4094 2617 2245 6040 * 4923 * 4635 2981 3500 * * 86 0 * * * * * * 6557 0 0 R 87 * * 5834 2666 5475 5432 5768 * 3380 5349 5602 3816 6155 1873 3204 3053 4937 * * * 87 19 6261 * 1585 585 * * 6557 1000 0 I 88 3488 * 5976 * 3174 5990 6318 2828 4795 2598 * * * 4217 2878 5114 4098 3211 5109 * 88 71 4378 * 1193 830 * * 6557 2337 0 R 89 4738 * 3017 4918 * 5503 4981 6563 3227 5833 5787 2191 4288 4053 5199 3057 3501 5573 * 6380 89 0 * * * * * * 6482 0 0 V 90 5928 * * 6266 3270 * * 2285 5216 1224 4510 5429 6318 5623 * * * 3227 * * 90 26 5833 * 1585 585 * * 6482 1000 0 P 91 4768 * 4516 4316 5429 6139 * * * 4537 * * 421 * * 6186 * 5135 * * 91 50 6104 5702 0 * * * 6482 1000 0 E 92 2716 * 3871 1840 6676 * * 5946 6295 * * 6059 2013 * 5264 3335 4327 6728 * 6141 92 24 5951 * 1585 585 * 0 6426 1000 1000 D 93 4902 * 3746 5491 4389 542 * * 6220 * * 6752 * 5965 5738 4735 4636 * * * 93 0 * * * * * 0 6429 0 1000 V 94 6000 * * * * * * 3256 * * * * * * * * * 185 * * 94 0 * * * * 0 * 6429 0 1000 T 95 3558 * 2809 3087 4534 3530 3236 4807 3525 * * 3735 * 3913 * 3269 5372 * 6631 5885 95 0 * * * * * * 6487 0 0 I 96 4923 6360 * * 3779 * * 1688 * 3383 2714 * * * * 6543 6188 1799 * 6451 96 0 * * * * * * 6487 0 0 E 97 6303 * 2992 1385 * 5746 5634 * 3511 3883 * 4563 * 5207 3940 3606 3879 * * * 97 0 * * * * * * 6475 0 0 I 98 3464 6227 * * 6595 * * 1549 * 3588 3560 * * * * * * 1411 * * 98 0 * * * * * * 6379 0 0 E 99 6322 * * 1919 * 5057 * * 1847 * * 4588 * 3650 6308 3473 2798 6118 * 4921 99 0 * * * * * * 6093 0 0 L 100 * * * 4084 * * * 2037 4864 1848 4103 * * * * * 6330 1765 * 5615 100 0 * * * * * * 5798 0 0 I 101 4683 * * * 4127 * * 2349 2771 4373 4669 * * 4881 * * * 3393 * 1538 101 0 * * * * * * 4933 0 0 S 102 2768 * * * * * * * * * * * * * * 1082 1393 * * * 102 0 * * 0 * * * 4199 0 0 //