HHsearch 1.5 NAME c3j0xU_ FAM FILE c3j0xU_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j0xU_.a3m DATE Thu Jan 10 07:19:41 2013 LENG 74 match states, 74 columns in multiple alignment FILT 103 out of 246 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.8 EVD 0.4620 2.0931 SEQ >ss_dssp CCSCTTSSSCSSSSCCCCSSCCSCSTTTGGGBCTTSCBCCHHHHTCCHHHHHHHHHHHHHHHHTTSSCCSGGGC >sa_dssp EEEEEDEEEDEBECCAECCDDCEDDECADDBBDECBCCCDDEEDECCEECBECACDAADDABEEEDBCDDDEEE >ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC >ss_conf 98777889943353588125555889999825899849572003979999999999999999704666544579 >Consensus arxxxrxkxCpxcxxxxxxidyknvxlLxxFixxxGkIlprrxTGlxxkxQrxixxaIkrARxxgLlPxxxxhx >c3j0xU_ ARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRHQ >UniRef50_Q2WGG3(22-74:80) Ribosomal protein S18 (Fragment) n=1 Tax=Selaginella uncinata RepID=Q2WGG3_SELUN E=2e-08 s/c=1.15 id=33% cov=70% -----------------ETVDHKNTSSPRRSPSKRGKILPKRMNRSTSKQQRLMTTAAKRARISALSP------ >UniRef50_A8J142(197-251:278) Mitochondrial ribosomal protein S18 (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8J142_CHLRE E=1e-08 s/c=1.11 id=27% cov=74% -------------AEVLEKADYKNVAFLTRwFLSPAGRLLPRRQTRLPVAVHKHVSRQVRLARHMGLI------- >UniRef50_C4PXX8(64-124:168) Expressed protein n=1 Tax=Schistosoma mansoni RepID=C4PXX8_SCHMA E=9e-08 s/c=0.95 id=32% cov=68% -------------------IRHTDVRILSQFLRPDGTVLPRHISGISCRSQSHLELMIERARKAGLLP------ >UniRef50_Q23K82(461-522:742) Putative uncharacterized protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23K82_TETTH E=2e-07 s/c=0.92 id=21% cov=70% ------------------DIHWRNTELITQFVNNSGCIKNKIQNRLTRPQQKKIARTIRLSREMLLMPF----- >UniRef50_UPI00005219CD(61-127:193) PREDICTED: similar to mitochondrial ribosomal protein S18A like n=1 Tax=Ciona intestinalis RepID=UPI00005219CD E=2e-06 s/c=0.80 id=25% cov=92% AQRLNQNDLCPLRSRGI-HITPYDVLILNQFITSEGDILSQAETGLSRKEYFKVIACVKMAQRANMLP------ >UniRef50_C7YS21(133-200:212) Putative uncharacterized protein n=2 Tax=Nectriaceae RepID=C7YS21_NECH7 E=1e-09 s/c=0.94 id=28% cov=82% -------------ALGISPLDmYKNFSLIEHFTSPSGMINHSQLTRLRPVNQRKVAKMVRRVQGMGIYPTIHAH- >UniRef50_Q5C271(133-198:228) SJCHGC09615 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5C271_SCHJA E=4e-09 s/c=0.94 id=26% cov=84% --------PCPICRDEYLVLHHQHIELLKHFINPDSfEIYPSSKTGICRRQEKILQQEVEKARDLGYiqiwLPF----- >UniRef50_B9EQB9(54-122:138) 28S ribosomal protein S18c, mitochondrial n=4 Tax=Euteleostomi RepID=B9EQB9_SALSA E=2e-15 s/c=1.21 id=29% cov=93% --YKQPQKGCILC---NITVDFKNVQLLSQFISPhTGRIYGRHITGLCGKKQREIGKAIKKAHSMGFMSVTHKN- >UniRef50_Q6C424(152-217:228) YALI0E30371p n=1 Tax=Yarrowia lipolytica RepID=Q6C424_YARLI E=1e-08 s/c=0.92 id=24% cov=89% -------KVDQFKEANFDPVKlWKDRMSLSHYVNYSGGISGSHTHHLSKQSHKKISKAIRRSRCAGIMPYLHK-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 143 * * * * * * * * * * * * * * 3408 * * * * 1 0 * * * * * * 3291 0 0 R 2 * * * 4604 * * * * 1478 * * * * 3338 997 * * * * * 2 0 * * * * * * 3938 0 0 Y 3 * * * * 1841 * * 4502 5139 * * 3147 5513 5417 3164 4521 * * * 1577 3 36 * 5342 * * * * 4271 0 0 F 4 4609 * * 3170 1873 * 5197 * 3025 3405 * * 4522 * 2582 * 5093 5108 * 4021 4 0 * * * * * 0 4344 0 1000 R 5 * * * * 3955 * 4129 * 1873 * * 2969 3417 4262 1797 5468 * 5540 * * 5 94 3984 * 1895 452 0 * 4713 1632 1000 R 6 5294 * 5174 * 4747 * * * 1998 * * 5336 4303 4457 1149 4538 4497 * * * 6 0 * * * * * * 4706 0 0 R 7 6136 * * * * 5738 * 5911 1664 * * 3405 3044 5988 1650 6049 5459 5565 * 5274 7 23 * 6003 * * * * 4725 0 0 K 8 6251 * 4968 3621 * * * * 791 5473 6069 * 4141 4734 3188 5524 4943 * * * 8 74 4323 * 2000 415 * 0 4786 1514 1000 F 9 6337 * * 5865 3045 3934 * * 3081 4636 * 5269 2065 * 4649 6351 4146 2313 * 4302 9 46 * 4992 * * 0 * 5063 0 1000 C 10 * 439 3056 4883 * * * 6004 * 5377 * 5710 * 4783 * 6237 * * * * 10 0 * * * * 1000 1000 5126 0 1542 R 11 6285 * * 6313 5028 * 5382 3989 3966 4560 6160 * 1103 4829 2971 5576 5303 4223 * 6888 11 0 * * * * * 0 5089 0 1000 F 12 5766 * * 6076 1498 * * 2162 * 1825 * * * * * * 5002 4759 * 4678 12 34 * 5438 * * 0 * 5101 0 1000 T 13 5581 860 4495 5283 * 6313 6281 5702 3583 6754 * 5751 * 6675 5603 3990 3726 5432 * 6619 13 71 5603 5192 1000 1000 977 1023 5111 1513 1470 A 14 2446 6223 6411 3183 * 7763 * 6374 2962 5785 * 6376 4618 3641 2039 3758 4673 5122 * * 14 35 5381 * 1116 893 1502 629 5119 1550 1829 E 15 4081 4874 2250 2643 * 5605 5499 6024 3606 3390 6111 3040 * 4399 4435 6342 5513 6411 5971 6744 15 39 * 5223 * * * 0 5112 0 1543 G 16 6517 * 5767 3088 * 2044 5238 6206 2810 * * 2246 4200 4229 4722 5304 * 4434 * * 16 47 5533 6621 1000 1000 1888 454 5092 1591 2232 V 17 6897 * 5201 6868 5566 * * 1805 4095 2371 * 3117 * 5961 * * 4844 2622 * 3876 17 108 5372 4378 0 * 1874 460 5161 1131 2123 Q 18 4812 * 2690 2353 * 6208 * 3497 3816 2797 * 4543 5910 5799 4631 5456 3726 4618 5703 5610 18 98 5585 4489 0 * 1327 734 5174 1424 2957 E 19 4898 * 3963 3554 4437 6007 3853 6680 3227 * 5433 4688 2468 4452 5158 * 3945 3402 * 3414 19 68 4861 6432 866 1148 209 2888 5103 1964 2999 I 20 4962 * * * 3770 * * 1571 6533 2014 * * 6648 6877 * * 6756 1953 * 6188 20 10 7203 * 1000 1000 848 1170 5108 1000 1581 D 21 * * 685 * * 6777 3717 * 4152 * * 3864 * * 5579 3760 3770 * * * 21 143 3599 6394 156 3287 0 * 5075 2657 1000 Y 22 * * * 5375 3150 * 3357 * * * * * 4839 * * 5248 * * 3488 701 22 57 4698 * 0 * * 0 5083 2129 1000 K 23 * * 5290 6961 * * * * 842 5256 * 4825 * 4986 2511 5894 3268 * * 5679 23 0 * * * * 0 * 5083 0 1000 D 24 * * 1404 * * * 4924 * * * 5267 981 * 6161 6163 5737 6654 * * * 24 0 * * * * * * 5054 0 0 I 25 4833 * 6909 5860 4243 * * 3064 7275 3491 * * 2968 * 5855 6629 3361 1287 * 6759 25 0 * * * * * * 5054 0 0 A 26 3331 * 4248 2461 * 7275 4695 7026 3628 3084 5868 4705 4658 4686 2776 3042 * 6207 * * 26 0 * * * * * * 4964 0 0 T 27 6530 * 6888 5880 2884 * * 2557 5595 1202 4767 6254 * * 6159 4051 4853 4501 * * 27 0 * * * * * * 4964 0 0 L 28 6509 * * * * * * 2727 * 316 * * 5424 * * * * 6475 * * 28 0 * * * * * * 4964 0 0 K 29 6909 6461 * 4036 * 6709 4138 7324 2424 4432 7207 4623 * 4479 3203 1701 4148 4701 * 6509 29 0 * * * * * * 4964 0 0 N 30 6161 * 7106 3693 * 5678 3445 6255 2820 6182 * 4656 * 1575 2407 4278 * * * 7316 30 14 6742 * 0 * * * 4964 1000 0 Y 31 * * * * 404 * * * * 4715 6546 6687 * * * 4902 * * * 2716 31 0 * * * * * * 4964 0 0 I 32 6254 * * * * * * 1699 * 2161 3279 * 5424 6635 * 6161 6265 1776 * * 32 26 5791 * 0 * * * 4964 1000 0 T 33 * 4385 3936 * * 4499 * * 5902 * 6265 2605 * * 3950 1697 1860 * * * 33 18 6347 * 0 * * * 4964 1000 0 E 34 6888 * 2329 2329 * 6894 6347 * 3337 * 7010 4841 2132 4868 5759 3059 6254 * * 5868 34 104 3840 * 0 * * * 4964 2324 0 S 35 4176 6850 3847 3880 5967 5498 4306 5749 5281 7121 4978 4592 * 3267 2701 3665 2521 5774 * 4151 35 76 4291 * 0 * * * 4964 2284 0 G 36 4122 * 5791 * * 210 * * 6673 * * 6810 * * * 6233 5814 * * 6623 36 46 5008 * 0 * * * 4964 1387 0 K 37 * 5580 4983 3655 * 4661 6562 4993 1328 4620 * 5424 * 3508 2436 5580 5031 * * * 37 0 * * * * * * 4964 0 0 I 38 * * * * * * * 322 * 4096 3868 * * * * * * 3774 * * 38 0 * * * * * * 4964 0 0 V 39 6810 * * 6704 4533 * 5535 3928 3182 1129 3844 5887 6723 6615 5366 5866 7067 5051 * 3347 39 0 * * * * * * 4964 0 0 P 40 5777 * 5490 * * 3473 4538 * 5709 * * 3693 990 6053 * 2413 6476 * * 6347 40 0 * * * * * * 4964 0 0 S 41 5575 * * * * * 6892 * 3603 4802 * 5666 5200 4406 761 3288 4519 6670 * 6325 41 0 * * * * * * 4964 0 0 R 42 4413 * 6773 6003 * 6320 3462 6543 3049 5082 * * 6347 5108 1098 3551 6263 4994 6314 6233 42 0 * * * * * * 4964 0 0 I 43 4863 * 5008 4186 5572 * * 2096 3217 3787 5423 * * 3797 3251 5480 4891 2722 * 4765 43 0 * * * * * * 4964 0 0 T 44 * * * * * * 5866 6053 6314 5262 * 3943 * * * 3031 431 * * * 44 0 * * * * * * 4964 0 0 G 45 * 6141 * 6671 6007 455 4625 * 4748 * * 4820 * * 3318 5845 * * * * 45 0 * * * * * * 4964 0 0 T 46 4076 4763 * * 6723 * * 3954 * 1219 6665 3566 * * * 4924 3232 2584 * * 46 0 * * * * * * 4964 0 0 R 47 6502 1167 6908 * * 6107 * * 6314 * * 4655 5949 * 4315 2058 2626 * * * 47 0 * * * * * * 4964 0 0 A 48 1773 6315 7743 6502 5790 6307 5796 4952 3137 4228 6263 4988 4596 4427 2526 4329 7053 4709 5081 * 48 0 * * * * * * 4964 0 0 K 49 5183 * 4916 6262 5666 7004 5344 * 909 5838 6528 6485 5603 4133 2578 6847 6511 5310 * 6367 49 0 * * * * * * 4964 0 0 Y 50 5205 * 6107 4612 6261 * 2386 * 2691 7367 5735 3712 * 1649 * 3897 6983 5090 * 4881 50 0 * * * * * * 4964 0 0 Q 51 * * * * * * 2395 * * * * * * 434 * * * * * 3848 51 0 * * * * * * 4964 0 0 R 52 5317 * 6314 6634 5070 * 6544 6007 1928 6645 * 5985 * 5608 853 6315 * 5591 * * 52 0 * * * * * * 4964 0 0 Q 53 3888 6367 6476 4622 * * 4251 5289 1678 3185 5204 * * 2949 2497 5461 6460 * * * 53 0 * * * * * * 4964 0 0 L 54 6182 * * * * * * 1897 * 1466 3425 * * * * * * 1929 * * 54 0 * * * * * * 4964 0 0 A 55 2054 6228 * 3710 4324 3965 * 5131 4391 4089 * 6258 * 5810 4803 2764 2716 4198 * * 55 0 * * * * * * 4961 0 0 R 56 3742 * * 4602 * 6411 5515 6748 1536 4226 4825 3942 * 4636 2543 5638 4086 4271 * * 56 0 * * * * * * 4961 0 0 A 57 789 4549 * 3389 * * 6181 * * 3818 6119 6483 * 4769 * 3846 4181 * * 6454 57 0 * * * * * * 4961 0 0 I 58 5421 * * * 5662 * * 553 * 4698 * * * * * * * 2079 * * 58 0 * * * * * * 4961 0 0 K 59 * 5174 * 3302 * * 6556 6662 851 4798 6525 * * 5485 2659 5662 6594 6248 * 5313 59 0 * * * * * * 4961 0 0 R 60 * * * 4870 * * 6472 5685 2704 5637 3487 5751 * 4429 1081 6454 3622 5495 6746 6566 60 0 * * * * * * 4961 0 0 A 61 237 4979 6264 * * * * * * * 6644 * * * * 3626 * 5962 * * 61 0 * * * * * * 4961 0 0 R 62 * * * * * * 5633 5951 2867 * * * * 3305 557 5802 * 5174 * * 62 0 * * * * * * 4956 0 0 Y 63 3884 5379 3534 4166 3701 5039 3525 3975 4385 4345 5888 3758 * 3522 3609 4160 7081 5309 * 3988 63 0 * * * * * * 4956 0 0 L 64 3325 5819 * 6875 4345 * 4210 3740 6308 1795 1942 * * 6524 * 4263 5845 5083 * 5328 64 0 * * * * * * 4956 0 0 S 65 1697 * * * * 802 6156 * 6661 4313 6630 5698 * * * 6117 * * * * 65 0 * * * * * * 4956 0 0 L 66 * * * * 4216 * * 3017 * 477 5283 * * * * * * 4441 * 4937 66 27 5765 * 2000 415 * * 4956 1000 0 L 67 * * * * 4688 * 5066 3046 * 916 2384 * * * * 5381 * 4339 * 6026 67 21 6094 * 2000 415 * * 4957 1000 0 P 68 * * 6111 * * * 6604 5968 5440 * * * 288 * * 3576 5843 * * 5973 68 0 * * * * * * 4885 0 0 Y 69 * * * * 1252 * * 6664 5826 * * * * * * 3794 5328 4758 * 1256 69 16 6505 * 0 * * * 4688 1000 0 T 70 6175 5641 4546 6365 * * * 3058 * 4805 * * * 4518 * 4470 1716 1466 * * 70 0 * * * * * * 4355 0 0 D 71 2634 * 2832 4634 * * 2097 * * * 4448 4060 * * 5712 4541 2659 3345 * * 71 0 * * * * * * 4118 0 0 R 72 * * * 3261 4762 * 4565 * 2117 * * * 2871 3755 2181 4526 3648 4979 * * 72 0 * * * * * * 3934 0 0 H 73 * * * 3251 * * 462 * * * * 4282 * * * * * * * 3086 73 0 * * * * * * 3599 0 0 Q 74 * * * * * * * * 586 * * * * 2535 2631 * * * * * 74 0 * * 0 * * * 2561 0 0 //