HHsearch 1.5 NAME c3iuwA_ FAM FILE c3iuwA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3iuwA_.a3m DATE Sun Aug 29 03:29:05 2010 LENG 79 match states, 79 columns in multiple alignment FILT 39 out of 43 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.8 EVD 0.4064 -0.7393 SEQ >ss_dssp CCCCEEEEEEEHHHHHHHHTTSCCEEEEECCSCCCTTCEEEEEEEETTEEEEEEEEEEEEEEECTTCCTTEEEEEEEEC >sa_dssp EEEDEBDBEBDCEDBDBADDEECDDBDCDDEDEBDECBCACACBCDEEEDDEDDBDACADECCEEEDEEDDBCACBDCE >ss_pred CCCCEEEEEECHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC >ss_conf 9771689976738889997597528998417886247899998752876255368999999736665698599999949 >Consensus xxxxxHxLKixpxyFxxVxxGxKtfEiRkNDRdfxVGDxLxLxExxxgxyTGrxxxxxItyixdxglxdgyvvLgixxx >c3iuwA_ QHPTIHTLKIETEFFKAVKERRKTFEIRKNDRNFQVGDILILEEYXNGXYLDDECEAEVIYITDYAQREGYVVLGIELH >UniRef50_C1I5G1(2-89:177) Predicted protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I5G1_9CLOT E=1e-12 s/c=0.84 id=39% cov=95% ---KMHELKILPQYFNDVKSEKKSFELRKNDRDFEIEDILILKEFNPhekyetmkddvySNFSGKKVLRQIIYILTDieGLNKDYAILGVE-- >UniRef50_B0NDF2(365-441:447) Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDF2_EUBSP E=4e-19 s/c=1.24 id=34% cov=96% ---KVHHIKLGATFFEEVASGEKTFELRKNDRGYKKGDILEMMEFKDGKNTGRTVRVLVTYILEefAGLEDGYCIMATSL- >UniRef50_A6LYH9(2-78:165) Putative uncharacterized protein n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYH9_CLOB8 E=5e-17 s/c=1.15 id=32% cov=94% ----IHELKITPNNYKVIRDGSKTFELVKYNRDFSVRDILVFQECEDsSGYTGRKIVKEISYVSNkgeDGLSEEFCILGLK-- >UniRef50_A2SN47(8-94:219) Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SN47_METPP E=5e-15 s/c=0.94 id=37% cov=95% --PSTHVLKTDPDAFDSVARGLKTVEIRRRDRDYRVGDTLLLlrtrfsaSEMATGqplDYSGDALAVLVTHIqTGYELPDALCVMSI--- >UniRef50_C5IYB8(3-77:116) Gp38 n=4 Tax=Angel-like phages RepID=C5IYB8_9CAUD E=2e-14 s/c=1.07 id=28% cov=94% ---TVHDVKIEPRWFDRIQQSEKFAEVRYDDRDYQAGDRIRFWRTDLPEY-GHSIERRITHVLRgvDGLSDGYVVLSLS-- >UniRef50_A1F616(1-55:62) Gp91 n=4 Tax=Vibrio cholerae RepID=A1F616_VIBCH E=8e-09 s/c=1.12 id=37% cov=65% ---------------------------RCNDRNYQVGDILNLNEWDGENYTGRSMTVEVTCMLTPKEFDAivepFVLLGTS-- >UniRef50_A7AY48(372-446:469) Putative uncharacterized protein n=2 Tax=Ruminococcus RepID=A7AY48_RUMGN E=4e-05 s/c=0.65 id=29% cov=89% -------IRLSTDTFEDVIAGRRPYLILKNDK-IRTGMIVSALEFMQGRATGRELALEIVCMDDAGtssaLEDGYCVVGIR-- >UniRef50_P21318(7-83:100) Putative uncharacterized protein ORFD in retron EC67 n=4 Tax=Enterobacteriaceae RepID=YR7D_ECOLX E=5e-21 s/c=1.31 id=39% cov=94% ----IHQLKIAPKYFNAVVAGQKTAELRKDDRGYKVGDVLSLCEWKHGVFTGREWAAVISHVLPvndvMAVSEQWVMLSIR-- >UniRef50_A4E7A3(2-85:88) Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7A3_9ACTN E=3e-12 s/c=0.87 id=37% cov=95% ---TTHRLKVLIKYADAIMNGTKTFEVRKNDRNFKVGDKIVFDVVTNEGYAVGAAARhplngatyRIDYILDDfeGLAQKYVALAIS-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * * * * * * 963 * * * * 1038 * * * * * * 1 0 * * * * * * 1275 0 0 H 2 * * * 963 * * 1038 * * * * * * * * * * * * * 2 0 * * * * * * 1275 0 0 P 3 * * * * * * * * * * * * 0 * * * * * * * 3 0 * * * * * * 1928 0 0 T 4 * * * * * * * * 1160 * * * * * * 3898 1043 * * * 4 0 * * * * * * 3473 0 0 I 5 * * * * * * * 1403 * 4438 4669 * * 3808 3231 * 2423 2540 * * 5 0 * * * * * * 3668 0 0 H 6 * * * * * * 0 * * * * * * * * * * * * * 6 0 * * * * * * 3763 0 0 T 7 * * 3859 1325 * * 4195 5369 4012 4220 * * * 2708 3382 * 5618 3876 * * 7 0 * * * * * * 3794 0 0 L 8 * * * * * * * 2791 * 375 * * * * * * * 3565 * * 8 0 * * * * * * 3931 0 0 K 9 * * * * * * * * 243 * * 4332 * * 3249 * * * * * 9 0 * * * * * * 3931 0 0 I 10 * 4332 * * * * * 942 * 2276 4780 * * * * * 2794 4545 * * 10 0 * * * * * * 3931 0 0 E 11 3270 * 2984 4169 * 5254 5350 * 3768 1757 * * * 4265 5217 3402 4538 * 5153 4332 11 0 * * * * * * 3931 0 0 T 12 3174 * * * * * 5279 4545 * * * * 721 * * 4197 2648 * * * 12 0 * * * * * * 3931 0 0 E 13 5069 5279 3292 1873 4528 * * 4412 2827 * * 4538 * 3311 4193 3587 5254 5049 * * 13 0 * * * * * * 3931 0 0 F 14 4908 * * * 2960 * 3341 * * * * 4538 * * * * 3861 5069 4762 834 14 0 * * * * * * 3931 0 0 F 15 4549 * * * 305 * * * * 5372 * * * * * * * * * 3016 15 0 * * * * * * 4007 0 0 K 16 3833 * 2338 1717 * * * 5515 3653 * * 3758 * 3376 4685 4455 5057 * * 4581 16 0 * * * * * * 4007 0 0 A 17 1237 * 1906 3598 * * * * 5034 4587 * * 4530 * 4763 4940 * 4588 * * 17 0 * * * * * * 4007 0 0 V 18 * * * * * * * 2363 5034 * * * * 3963 * * * 492 * * 18 0 * * * * * * 4007 0 0 K 19 3246 4259 * 5659 * * * 2905 3563 2642 3445 * * 4201 3334 5435 5916 2946 * 5087 19 0 * * * * * * 4007 0 0 E 20 2347 * 2713 3036 * * * * 5148 * * 3116 * 4763 4940 1808 5034 * * * 20 0 * * * * * * 4007 0 0 R 21 * * * 5341 * 251 * * 5236 5034 * 5452 * * 5785 4763 * * * * 21 0 * * * * * * 4007 0 0 R 22 * * 4675 3438 5452 * * 5659 2201 3444 5148 * * 5310 2278 3950 3077 3760 * * 22 0 * * * * * * 4007 0 0 K 23 * * * * * * * * 160 * 4792 * * * 3854 * * * * * 23 0 * * * * * * 4007 0 0 T 24 5034 * * * 4763 5454 * 5844 3905 4530 * 3480 3854 * 3918 3576 1078 * * * 24 0 * * * * * * 4007 0 0 F 25 2367 * * * 633 * * * * * * 5057 * * * * * 4940 5087 3854 25 0 * * * * * * 4007 0 0 E 26 * * * 160 * * * * * 3854 * * * * * * * * 4792 * 26 0 * * * * * * 4007 0 0 I 27 * 4349 * * 3260 * * 1101 * 2019 * * * * * * * 2904 * * 27 0 * * * * * * 4007 0 0 R 28 * 4789 * * * * * * * 3873 * * * * 228 * * 4580 * * 28 0 * * * * * * 3993 0 0 K 29 * 5732 * * 5457 * * * 630 3716 * * * * 3248 * 5684 * * 3163 29 0 * * * * * * 3993 0 0 N 30 4522 * 3133 * * * * * * * * 378 * * 5003 * * * * 4580 30 0 * * * * * * 3993 0 0 D 31 * * 62 * * * * * * * * 4580 * * * * * * * * 31 53 * 4789 * * * * 3993 0 0 R 32 * * * * * * * * 3692 * * * * * 116 * * * * * 32 116 * 3692 * * 0 * 3975 0 1000 N 33 5220 * 1167 4422 * 3645 5168 * * * * 1534 * * * * * 5153 * * 33 0 * * * * 0 * 3876 0 1000 F 34 * * * * 772 * * 3873 * * * * * * * * * * * 1530 34 0 * * * * * * 3993 0 0 Q 35 4240 4173 * 3491 * * 4250 * 1890 * 5057 4662 * 1891 3330 4580 * * * * 35 0 * * * * * * 3993 0 0 V 36 4784 * * * * * * 3829 5306 5667 * 6082 * 5468 5386 * 3386 532 * * 36 0 * * * * * * 3993 0 0 G 37 * * 4302 5360 * 290 5667 * * * * 5109 * * 4103 * * * * * 37 0 * * * * * * 3993 0 0 D 38 * * 133 * * * * * * * 3873 * * * * 5659 * * * * 38 0 * * * * * * 3993 0 0 I 39 * 3583 * 3552 * * 5189 1996 4574 3903 5271 * * * 4055 4089 2426 3414 * 5684 39 0 * * * * * * 3993 0 0 L 40 * * * * * * * 3242 * 365 * * * * * * * 3083 * * 40 0 * * * * * * 3993 0 0 I 41 4575 3795 4789 5306 5833 * * 2932 4462 2501 * 4387 * * 3700 3146 5388 2536 5657 * 41 0 * * * * * * 3993 0 0 L 42 3873 * * * 3058 * * * * 389 4384 * * * * * * * * * 42 46 5003 * 2807 222 * * 3993 1000 0 E 43 * 3819 4574 4031 * * 5386 5388 3885 3054 4024 4070 * 3129 2146 3774 * 5684 4784 * 43 0 * * * * * * 3993 0 0 E 44 4575 * * 270 * * * * 5189 * * * * * 4070 * * 4574 * * 44 0 * * * * * * 3993 0 0 Y 45 * 4580 * * 1822 * * 5109 * * 5003 * * * * * 3478 3406 2733 1833 45 204 3403 4742 1627 564 * * 3993 1994 0 X 46 4919 * 2484 2453 * 5207 * 5410 2276 5791 3868 3436 5469 4443 * * 4532 4114 * * 46 0 * * * * 0 * 4022 0 1502 N 47 * * 2800 3278 * 3609 3798 * 5271 4784 * 2302 3082 2833 5189 5833 5003 * * * 47 205 2918 * 1926 441 * * 3993 2273 0 G 48 4153 5267 5213 4040 * 832 * * 3190 * * * 4784 5226 * 3918 5081 * * * 48 152 3322 * 2199 354 * * 3993 2067 0 X 49 5622 * 3518 2649 * 2788 * * 3106 * * 3413 * 4920 2693 4029 * 2951 * * 49 0 * * * * * * 3999 0 0 Y 50 3873 * * * 3429 5226 4089 * * 5325 * 5306 * * * * * * * 508 50 128 4371 4784 2807 222 * * 3993 1599 0 L 51 4493 * * * * * * * 5652 3922 * * * 5283 * 3749 430 * * 5184 51 37 * 5303 * * 0 * 3923 0 1000 D 52 * * 5845 4529 * 316 4526 * * * * * * * * * 5206 4508 * 5532 52 0 * * * * * 0 3984 0 1000 D 53 4331 * 3952 5542 * 4508 4731 * 4592 * * 4098 * 3738 842 * * * * 4319 53 29 5647 * 4000 93 * 0 3984 1000 1000 E 54 2787 5532 * 1697 5252 * * 5526 2670 * * 4049 * * 4397 3315 3864 4537 * * 54 0 * * * * * 0 3984 0 1000 C 55 4508 3190 * 4505 * * 5986 1895 * 2555 4353 * * * * 5441 * 2186 5305 5033 55 34 5441 * 2000 415 0 * 3984 1000 1000 E 56 2588 * 5468 2553 5673 5684 5559 5226 4747 3830 5325 5109 * 3533 5306 4748 3866 3357 5057 4408 56 0 * * * * * * 3993 0 0 A 57 2077 4689 * 5057 4796 * * 5388 4077 3873 * * * * 2213 * 4789 1972 * * 57 103 3863 * 2376 309 * * 3993 1473 0 E 58 5325 * 3452 1609 * * 5081 5667 3884 3045 * * * 3639 2374 * * 5326 * 5673 58 0 * * * * * * 3993 0 0 V 59 * * * * * * * 656 * * * * * * * * 5484 1543 * * 59 0 * * * * * * 3993 0 0 I 60 * 5109 4574 * * * * 3017 5388 * * * * * * 2984 900 3068 * * 60 33 5484 * 2322 322 * * 3993 1000 0 Y 61 * 3521 4037 * 4419 * 2400 * * * * * * * * * * * * 699 61 0 * * * * * * 3993 0 0 I 62 * * * * * * * 935 4437 3639 2988 * * * * * * 2155 * * 62 86 4110 * 0 * * * 3993 1579 0 T 63 4569 * 3873 * 5081 * * * * 1337 * * * * * 3867 1338 * * * 63 115 3704 * 1456 654 * * 3993 1812 0 D 64 * * 946 3554 * 4179 * * * * * 3558 5310 4203 4730 3787 3921 * * * 64 283 2488 * 1478 642 * * 3985 2582 0 Y 65 3411 * 1859 * 3000 * * * * 4222 5310 * 5723 * 5416 * * 4556 * 1549 65 361 2176 * 834 1187 * * 3985 2616 0 A 66 2477 * * 3284 * 1003 * * 4594 5052 5571 4284 * 5258 * 4363 * * * * 66 171 3452 5629 1810 484 * * 3985 1511 0 Q 67 * * 5176 3790 * * * 5407 * 1027 * * * 1792 * 5519 * 4227 * 5508 67 67 4456 * 1818 481 0 * 3988 1484 1000 R 68 3438 * * 2645 5723 * * 5195 2086 4556 * 5345 4179 3681 5892 2943 5452 4558 4222 * 68 79 4222 * 0 * * * 3985 1466 0 E 69 5063 * 1051 2465 * * 5195 * 3741 * * 5447 2844 4568 * * * * * * 69 0 * * * * * * 3985 0 0 G 70 4301 * 3810 4574 * 506 5175 * 4003 * * 5920 * 5310 * * * * * * 70 28 5723 * 2000 415 * * 3985 1000 0 Y 71 * * * * 2874 * * 5052 * 4265 * * * * * * * * 3569 520 71 0 * * * * * * 3985 0 0 V 72 5345 1682 * * * * * 4305 * 5258 * * * * * * * 768 * * 72 0 * * * * * * 3985 0 0 V 73 3847 * * * * * * 1646 * 3220 4234 * * * * * * 1150 * * 73 0 * * * * * * 3985 0 0 L 74 * * * * 3680 * * 5195 * 587 2638 * * * * * * 3869 * * 74 0 * * * * * * 3985 0 0 G 75 3031 * * * * 917 * * * * * * * * * 1523 * * * * 75 0 * * * * * * 3985 0 0 I 76 * * * * 2994 * * 1159 * 2741 4556 * * * * * 2856 3373 * * 76 0 * * * * * * 3985 0 0 E 77 * * 3879 1954 * * * * 1737 * * * * 4650 2535 2631 * * * * 77 0 * * * * * * 3881 0 0 L 78 * * * * * * * * * 903 3100 * * * * * * 1521 * * 78 0 * * * * * * 2901 0 0 H 79 * * * 1556 * * 1690 * * * * * * 1515 * * * * * * 79 0 * * 0 * * * 1715 0 0 //