HHsearch 1.5 NAME c3ij2B_ FAM FILE c3ij2B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3ij2B_.a3m DATE Sat Aug 28 23:56:01 2010 LENG 110 match states, 110 columns in multiple alignment FILT 22 out of 26 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.4500 0.1462 SEQ >ss_dssp CCCCCCSSCEEEEECSCCCEEEBTTSCEEEECCCCCTTSCCCCCCCEEEEESCSCSBTTBSTTSCTTTEEEEEEEEEEEEEEEEEBTTBCCEEEEEEEEE EEEEEEECCC >sa_dssp EEEEEDDBCDEDDECCECDDBDADEEDEBDBCCECEEEECDEDCEBDBBDCEDEDBCEDAADECDDEDDDBDBDCDDDDDEBCACCEEEEDECDADBCDD BDCDDDEDEE >ss_pred CCCCCCEEEEEEEEEECCCEEECCCCCEEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEEEEEEEEECCCEEEEEEEECCC CEEEEEEECC >ss_conf 9754010110335674041486479989999813003883389999999960889988863576401366345665767886995078063479997665 1899876079 >Consensus hxgxxxvCesxsxWvxxxxxaxDxxgxxVevlxxixxxxxxxxQyfxetxCxxxxxxxsgCxGiDxxxwxSxCxxxxsxvrAltxxxxxxxWxxIxIxts CvCxvxrKxx >c3ij2B_ HMGEFSVCDSVSVWVGDKTTATDIKGKEVTVLAEVNINNSVFRQYFFETKCRASNPVESGCRGIDSKHWNSYCTTTHTFVKALTTDEKQAAWRFIRIDTA CVCVLSRKAT >UniRef50_Q19TV5(130-242:372) Prepro-neurotrophin n=2 Tax=Branchiostoma floridae RepID=Q19TV5_BRAFL E=4e-33 s/c=1.26 id=39% cov=99% HAGqEVSVCDEKQEYKHISEPLNDYKNREVEVLQSFITpdlnNGEVINQFFAVTTCNDSRGSEGGCRGIDKAHWTSSCVTKKSNVPAIVRIGGKLEYTFI AINTSCNCALKKK-- >UniRef50_Q19TV4(272-377:391) Prepro-neurotrophin n=2 Tax=Strongylocentrotus purpuratus RepID=Q19TV4_STRPU E=2e-28 s/c=1.19 id=33% cov=90% ------VCESTSGWI-VKKWGTDMYGQNVTILSEImTAGNIQVTQWFYETACARPQGLHGvqRCLGIDNNNYDSVCLTKSAWVYAMIRtARGEEGWTWIA ISSSCNCAV----- >UniRef50_C3ZI40(126-215:217) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZI40_BRAFL E=0.0005 s/c=0.50 id=29% cov=81% ----------------NPRTALNRKNEEVELWVGSDRNGRTKLQLIHEVSCRSATPVHQGC-GTASA--GGFCTEEKTLQRAYVISQDTLQPRpdWIYVK TSCSCHVER--- >UniRef50_Q9J5D5(39-144:144) ORF FPV076 beta-Nerve growth factor n=2 Tax=Fowlpox virus RepID=Q9J5D5_FOWPV E=2e-20 s/c=0.94 id=27% cov=94% -----PACELVTTWV-DIREVSPVNGtgvSKIEFLGRYSEKGDGYTQYIQMISCMGFPNSTSPCKGIDESRWESYCSTVTEIKKIMYLGENNAVMtKHVS VPVNCVCMVKRK-- >UniRef50_D1LX76(154-243:243) Nerve growth factor-like protein n=1 Tax=Saccoglossus kowalevskii RepID=D1LX76_SACKO E=7e-18 s/c=1.02 id=32% cov=79% ------VCRSSNEWIQ-LTHGSNEESDLVEVYQ---------NQWFHVTRC---RNQSSPCTGIAEM-YTSRCKEKQSWTNAYvkTLDSDAYSWQWISIT TCCTCVIS---- >UniRef50_B7QKK5(103-197:200) Putative uncharacterized protein n=1 Tax=Ixodes scapularis RepID=B7QKK5_IXOSC E=5e-17 s/c=0.93 id=26% cov=84% ------ICQTTTQWEQLNRT-QDYDGHEVEIVQ------DEVQQYVFSYRCATAQN---PCTAI-SALYDSECTERKGWMylyyRPLEGEDRTAKWGYVS VNHHCVCKVTPK-- >UniRef50_B7P9R7(10-61:70) Venom nerve growth factor, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7P9R7_IXOSC E=3e-10 s/c=1.27 id=43% cov=46% ------VCSSHSDWVT-RREARDIHGHVVEVLDVIPFNGTFVRQYFYETFCSPPNSA------------------------------------------- ---------- >UniRef50_Q6VZ68(56-154:169) CNPV279 beta-NGF-like protein n=1 Tax=Canarypox virus RepID=Q6VZ68_CNPV E=1e-16 s/c=0.88 id=23% cov=89% -------CKTVTSwkWIMNSDAIKDLNSSI--LLGTIDHKGVSYKQYVKEITCTGYNSTK--CLGTDESRWLSYCEQIVTSVNVSTYKDNSKGLLSLNVH SGCRCMVKEK-- >UniRef50_UPI0000E49DE3(142-240:249) PREDICTED: hypothetical protein, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E49DE3 E=7e-14 s/c=0.79 id=22% cov=79% -------CEEISRWEKLSQ-GINFHSAEVDVYEG---------QWFWVTRCvrqvDPTQNGYTECYGVARSNeiADGSCVETIGWILAYSRLKsdpfGEY EWDYIAVPNCCSC------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * H 1 * * * * * * 190 * * * * 3019 * * * * * * * * 1 0 * * * * * * 2367 0 0 M 2 2599 * * * * * * * * * 3798 * * * 390 * * * * * 2 0 * * * * * * 2475 0 0 G 3 * * * * * 0 * * * * * * * * * * * * * * 3 226 2783 * 0 * * * 2656 1000 0 E 4 * * * 420 * * * * * 2998 * * * * * * * 2970 * * 4 0 * * * * * * 2656 0 0 F 5 * * * * 4019 * * * 3751 2323 * * * * * * * 2783 * 946 5 0 * * * * * * 2656 0 0 S 6 4088 * * * * * * * * 3350 * * 2152 * * 694 * * * * 6 0 * * * * * * 3037 0 0 V 7 2147 * * * * * * 3570 * * * * * * * * * 535 * * 7 0 * * * * * * 3795 0 0 C 8 * 0 * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 4059 0 0 D 9 * * 1450 1353 * * * * 3651 * * * * 3679 4054 5348 * * * * 9 0 * * * * * * 4059 0 0 S 10 4825 * * 2754 * * * * * 3479 * * * * * 813 2665 * * * 10 0 * * * * * * 4059 0 0 V 11 * * * 2625 * * 5348 2758 3787 * * * * * * 4054 2344 1574 * * 11 0 * * * * * * 4059 0 0 S 12 * * * 4595 * * * * * * * 3381 * 3787 * 882 2015 * * * 12 0 * * * * * * 4059 0 0 V 13 * * 5348 2545 * 3355 3742 * * 4912 * * * 3679 3012 3651 2775 2551 * * 13 120 3651 * 1000 1000 * * 4059 1000 0 W 14 * * * * * * * * * * * * * * * * * * 109 3787 14 0 * * * * * * 4059 0 0 V 15 * * * 2417 * * * 2305 3787 * * * * * * * * 894 * * 15 238 * 2716 * * * * 4059 0 0 G 16 3826 * * * * 2630 3565 * 3549 * 3738 * * 2766 * 3213 1899 * * * 16 243 4407 3213 1000 1000 0 * 3824 1000 1749 D 17 * * 1657 * * * * 3786 * 2693 * 1358 * * * * * 3927 * * 17 0 * * * * 0 * 4113 0 1431 K 18 * * * * * * * 3588 1413 3429 * 3836 3940 * 3290 2245 * * * * 18 0 * * * * * * 4217 0 0 T 19 * * 3048 3893 * * * * 3357 * * * * 3873 1694 3848 1902 * * * 19 102 * 3873 * * * * 4217 0 0 T 20 3735 * * 3230 * * 2732 * 3934 * * * 3829 * * 4942 1197 * 3983 * 20 112 * 3742 * * 0 * 4129 0 1000 A 21 945 * * * * 2384 * 3655 * 3871 * * * * * * * 2826 * * 21 0 * * * * 0 * 4146 0 1000 T 22 * * * * 4495 * * 3385 3788 4172 4999 3940 * 3880 5437 2927 2469 2456 * 4314 22 0 * * * * * * 4282 0 0 D 23 * * 510 * * * * * * * * 2537 3648 * * * 4447 * * * 23 0 * * * * * * 4282 0 0 I 24 4775 * 4946 4273 3941 * * 2407 * 2823 3430 * * * 3241 5208 * 2992 * 2910 24 0 * * * * * * 4282 0 0 K 25 * * 3880 3293 * 4765 3003 * 2747 * * 2716 * * 3032 3153 3733 * * 4120 25 0 * * * * * * 4282 0 0 G 26 * * * * * 535 * * * * * 3051 * * * 2402 * * * * 26 120 3648 * 1585 585 * * 4282 1000 0 K 27 3941 * 4273 3303 * 4825 2661 * 4040 * 4495 2744 * 4120 3361 2716 5208 * * * 27 0 * * * * * * 4282 0 0 E 28 * * * 1275 * * * 3254 2942 4273 * 3411 * 4117 4495 * 3623 5437 * * 28 108 * 3788 * * * * 4282 0 0 V 29 * * * * * * * 3474 * * * * * * 4168 * * 227 * * 29 0 * * * * * 0 4109 0 1000 T 30 * * 3855 1124 * * * * * * 4673 * * * 4386 * 1377 * * * 30 0 * * * * 0 * 4109 0 1000 V 31 * * * * 3648 * * 2626 * 2158 * * * * * * * 905 * * 31 0 * * * * * * 4282 0 0 L 32 * * * * * * * * * 695 3381 * * * * * * 3880 3303 3097 32 0 * * * * * * 4282 0 0 A 33 3752 * 5437 3316 * 1948 * * 3526 5208 * * 3337 2436 * 3474 * 4172 * * 33 184 * 3063 * * * * 4282 0 0 E 34 * * 3979 1514 * 2333 4613 * 4705 * * 4843 * * 3443 3773 3585 5286 * * 34 122 * 3624 * * * 0 4055 0 1533 V 35 4376 * * * 3104 * * 1456 * 4118 * * * * * 3617 4163 2438 * 3450 35 214 2856 * 3056 185 * 0 4076 1584 1921 N 36 * * 2800 * * * * 3239 4682 * * 3658 3123 2294 4465 3450 2499 * * * 36 56 4712 * 0 * * 0 4076 1000 1921 I 37 3075 * * 3450 4899 * 3045 2751 * 4376 * * 4118 * 2864 * 2318 4536 * * 37 106 3816 * 2000 415 * 0 4076 1000 1921 N 38 * * * * * 2228 * * 2703 4601 * 1179 * 4341 * 3312 * * * * 38 0 * * * * * 0 4076 0 1921 N 39 4163 * 4376 * * 1405 * * 4536 * * 1900 * * * 3099 3465 * * * 39 0 * * * * 1485 637 4076 0 1921 S 40 * * 2564 3729 * 3105 * 3851 4183 4252 * 5137 * * 3827 2894 3776 2680 * * 40 0 * * * * * 0 4020 0 1482 V 41 * * * 3613 5362 3517 * 5137 4866 * * 4853 2773 2635 * 2952 3827 2306 * * 41 78 * 4252 * * * 0 4020 0 1482 F 42 * * * * 5035 * * 3613 2350 2570 * * * * * * * 1864 * 2009 42 0 * * * * 542 1675 3980 0 1836 R 43 * * * * * * * * 1336 4018 * 2911 * 3011 3529 * 2770 * * 4262 43 0 * * * * 0 * 4129 0 1000 Q 44 * * * * * * * * * * * * * 0 * * * * * * 44 0 * * * * * * 4282 0 0 Y 45 * * * * 3298 * * * 4447 3438 * * * * * * * * 2520 771 45 0 * * * * * * 4282 0 0 F 46 * * * * 569 * * 2886 * * 4314 * * * * * * 2833 * * 46 0 * * * * * * 4282 0 0 F 47 3940 * * * 2000 * 3222 * 3788 4314 * * * 3648 4447 * * * 3941 1921 47 0 * * * * * * 4282 0 0 E 48 * * * 577 * * * * * * 3648 * * * * 3880 * 2458 * * 48 0 * * * * * * 4282 0 0 T 49 * * * * * * * 2716 * * * * * * * * 559 3303 * 3880 49 0 * * * * * * 4282 0 0 K 50 4120 * * * 5437 * * * 2189 * * * * * 1607 2886 2080 * * * 50 0 * * * * * * 4282 0 0 C 51 * 0 * * * * * * * * * * * * * * * * * * 51 264 3941 3293 2000 415 * * 4282 1000 0 R 52 2836 * 3736 * * * 4808 5092 3101 * 3447 2777 * * 2508 4087 2931 * * * 52 59 4640 * 4248 78 822 1203 4164 1000 1557 A 53 3997 * 3859 4978 * 2349 * * * * * 5173 2224 * 4029 2530 3779 3452 * * 53 0 * * * * * 0 4207 0 1000 S 54 2038 * 4907 4247 3596 4970 * * 4692 * 3748 * 3145 * * 2466 3777 * * 3723 54 0 * * * * 0 * 4207 0 1000 N 55 4495 * * * * 3262 4999 * 3969 * * 2681 3648 2392 2487 * 3303 * * 4314 55 65 4495 * 4322 74 * * 4282 1000 0 P 56 4960 * * * * 2582 * * * * * 1918 1866 * * 2651 5017 4775 * 4825 56 160 4765 3880 3907 100 * * 4282 1000 0 V 57 3091 * * 4882 * 2503 * * * 4013 * 4347 * 4109 * 2686 2347 2725 * * 57 0 * * * * * 0 4146 0 1000 E 58 * * * 2880 * 3030 2518 * 2703 * * * 5118 * * 3385 2616 4188 * 3814 58 179 4809 3627 2807 222 * 0 4104 1000 1000 S 59 4505 * * 4597 * 2552 * * * * * 4803 * 2917 4712 1120 3685 * * * 59 104 3847 * 1000 1000 1105 902 4055 1000 1611 G 60 4338 * * 3868 * 970 * * * * * * 2123 * 4001 3654 * * * * 60 0 * * * * 0 * 4074 0 1000 C 61 * 0 * * * * * * * * * * * * * * * * * * 61 84 * 4146 * * * * 4244 0 0 R 62 * * * 4137 * * * * 3535 1756 * * * * 1486 * 2907 * * 3826 62 0 * * * * 0 * 4159 0 1000 G 63 3839 * * * * 105 * * * * * * * * * * * * * * 63 69 * 4420 * * * * 4244 0 0 I 64 4409 * * * * * * 786 * * * * * * * * 2344 2506 * * 64 108 * 3794 * * * 0 4180 0 1000 D 65 2246 * 341 * * * * * * * * * * * * * * * * * 65 0 * * * * 1034 966 4052 0 1515 S 66 4022 * 4924 1908 * * * * 2825 * * 4024 * * 2824 2261 3529 * * * 66 0 * * * * * 0 4180 0 1000 K 67 2273 * * * * * * * 2506 4409 4106 4024 * * 2174 2127 * * * * 67 193 * 2999 * * * 0 4180 0 1000 H 68 * * * * 4058 * 1517 * * 3576 * 2647 * 3136 2100 * * * * * 68 137 3460 * 1000 1000 1556 600 3968 1000 1859 W 69 3691 * * * * * * * * * * * * * * * * * 474 2302 69 0 * * * * 900 1107 4058 0 1378 N 70 * * 2313 3564 * 3900 * 4846 * 3705 * 1789 * * 4409 * 2990 3764 * * 70 0 * * * * * 0 4180 0 1000 S 71 * * * * * 2893 * * * * * * * * * 209 * * * * 71 0 * * * * 0 * 4180 0 1000 Y 72 * * * 2476 4116 * * * 4384 * * 4903 * 3067 4160 2923 * 4055 * 1671 72 0 * * * * * * 4211 0 0 C 73 * 0 * * * * * * * * * * * * * * * * * * 73 0 * * * * * * 4211 0 0 T 74 * * * 3746 * * * * 2020 4055 * * * * 4722 3600 1650 2476 * * 74 0 * * * * * * 4211 0 0 T 75 3196 * * 1750 * * * * * * * 3227 * 3746 * * 1279 * * * 75 0 * * * * * * 4211 0 0 T 76 * * * 3244 * * * 3746 1777 * * * * * 3824 2700 2178 3600 * * 76 0 * * * * * * 4211 0 0 H 77 * * * * * * 2393 3938 2360 * * * * 1814 * 3210 3600 3746 * * 77 0 * * * * * * 4211 0 0 T 78 4055 * * 3600 * 2880 * * * * * * * * * 1435 1508 * * * 78 0 * * * * * * 4211 0 0 F 79 * * * * 2068 * * 3600 * 4116 * 3908 * * * 3746 * * 1738 2471 79 0 * * * * * * 4211 0 0 V 80 * * * * * * 4384 3938 3600 * 3824 * * 4116 * * 4160 689 * * 80 106 3824 * 2000 415 * * 4211 1000 0 K 81 * * * * * * * * 3137 3938 * 2451 3908 * 967 * * * * 4055 81 0 * * * * * * 4211 0 0 A 82 474 * * * * * * 3600 * * * * 3824 * * 4253 * 3746 * * 82 0 * * * * * * 4211 0 0 L 83 * * * * * * * 3070 * 1194 2810 * * * * 3746 * 4384 * 2483 83 83 4160 * 1000 1000 * * 4211 1000 0 T 84 * * * 3824 * * * 4055 * * * * * * * 3938 1009 2155 * 3600 84 0 * * * * * * 4211 0 0 T 85 4846 * * 4386 * 3824 * 2828 4677 2389 4722 * * * 2381 2832 5003 * * 3746 85 172 3151 * 0 * * * 4211 1565 0 D 86 4055 * 1580 3263 3880 3600 * 3908 3030 3938 * * * * * 4116 * * * 4684 86 185 3053 * 0 * * * 4211 1554 0 E 87 4825 * 2785 2711 * 3908 * * 2252 * * 3539 * 3436 3211 3268 * * * * 87 159 3261 * 1570 592 * * 4211 1546 0 K 88 * * 3138 * * 1415 * * 3856 * * 1427 * * 3824 * * * * * 88 71 4384 * 1585 585 * * 4211 1000 0 Q 89 4160 * * 2995 * * * * 2447 3880 * 2890 * 3835 2648 3746 2963 * * * 89 103 3860 * 0 * * * 4211 1305 0 A 90 2079 * * 4055 * * * 3703 3746 2539 * * * * * * * 1952 * 3045 90 0 * * * * * * 4211 0 0 A 91 2428 * * 2923 * 1625 * * 3824 * * * * 4116 4677 4160 * 2890 * * 91 0 * * * * * * 4211 0 0 W 92 * * * * * * * * * 3746 3600 * 4116 * * * * * 476 3908 92 124 3600 * 0 * * * 4211 1000 0 R 93 * * 2594 * * 3824 * * 3600 3746 * * * 4160 1238 * 2980 * * * 93 86 4116 * 1000 1000 * * 4211 1000 0 F 94 * * * * 2518 * 3600 * * 3880 4384 * * * * 3746 * * 1457 2409 94 0 * * * * * * 4211 0 0 I 95 * * * * * * * 474 * 3746 * * * * * * * 2283 * * 95 0 * * * * * * 4211 0 0 R 96 2381 * * * * * * * * * * 3746 * * 1255 2258 * 4384 * 4116 96 0 * * * * * * 4211 0 0 I 97 * * * * * * * 853 * 4386 * * * * * * * 1328 * * 97 0 * * * * * * 4211 0 0 D 98 * * 1680 * * * 3746 * 3244 * * 2035 2759 * * 4055 4160 * * * 98 0 * * * * * * 4211 0 0 T 99 2845 * * * * * 3824 * * * * 3938 * * * 2524 1319 2733 * * 99 0 * * * * * * 4211 0 0 A 100 1967 3045 * * * 3746 3824 * * * * 3600 * * * 1339 * * * * 100 0 * * * * * * 4211 0 0 C 101 * 0 * * * * * * * * * * * * * * * * * * 101 0 * * * * * * 4211 0 0 V 102 * * * * * * * 4253 * * * 2980 * * 3746 2550 4160 945 * * 102 0 * * * * * * 4211 0 0 C 103 * 0 * * * * * * * * * * * * * * * * * * 103 0 * * * * * * 4211 0 0 V 104 2592 * * * * * 2984 * 3732 * 2594 * * * * * 2615 1720 * * 104 0 * * * * * * 4165 0 0 L 105 * * * * * * * 4006 * 1164 * * * * * * * 1025 * * 105 0 * * * * * * 4165 0 0 S 106 * * * 2667 * * * * 1781 * * * * * * 1623 2139 * * * 106 0 * * * * * * 3822 0 0 R 107 * * * 3289 * * * 3888 3276 * 3717 * 3230 * 877 * * * * * 107 0 * * * * * * 3658 0 0 K 108 * * * * * * * * 231 * * 3902 * * 3625 * * * * * 108 0 * * * * * * 3449 0 0 A 109 1853 * * * * * * * * * * * * * * 467 * * * * 109 0 * * * * * * 1466 0 0 T 110 * * * * * * * * * * * * * * * * 0 * * * 110 0 * * 0 * * * 1000 0 0 //