HHsearch 1.5
NAME  c3i8iI_
FAM   
FILE  c3i8iI_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c3i8iI_.a3m 
DATE  Wed Jan  9 15:46:12 2013
LENG  30 match states, 30 columns in multiple alignment
FILT  1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.4567  2.3682 
SEQ
>ss_dssp
CTTTTTTTGGGGGTTTHHHHHHTSTTTCCC
>sa_dssp
EEEEDEDDEDEEDDDDDDEDDEECECEEEE
>ss_pred
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>ss_conf
952199999998666899999999997419
>Consensus
maldierikeelsqatvlelkqlidalkea
>c3i8iI_
MALDIERIKEELSQATVLELKQLIDALKEA
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
M 1    *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

A 2    0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

L 3    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

D 4    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

I 5    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

E 6    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1000	0	0	

R 7    *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

I 8    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

K 9    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

E 10   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1000	0	0	

E 11   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

L 12   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1000	0	0	

S 13   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

Q 14   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

A 15   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

T 16   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	16
       0	*	*	*	*	*	*	1000	0	0	

V 17   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	17
       0	*	*	*	*	*	*	1000	0	0	

L 18   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1000	0	0	

E 19   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1000	0	0	

L 20   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1000	0	0	

K 21   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1000	0	0	

Q 22   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1000	0	0	

L 23   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1000	0	0	

I 24   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1000	0	0	

D 25   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1000	0	0	

A 26   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1000	0	0	

L 27   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1000	0	0	

K 28   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	28
       0	*	*	*	*	*	*	1000	0	0	

E 29   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	29
       0	*	*	*	*	*	*	1000	0	0	

A 30   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	30
       0	*	*	0	*	*	*	1000	0	0	

//