HHsearch 1.5 NAME c3h3iA_ FAM FILE c3h3iA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3h3iA_.a3m DATE Sun Aug 29 09:17:15 2010 LENG 138 match states, 138 columns in multiple alignment FILT 8 out of 12 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.7 EVD 0.4183 -0.5130 SEQ >ss_dssp CCGGGCEEEEEEEEEEETTEEESSTTCCCSEEEEEEECTTCCSSEEEEECTTSSSCCEEEEEEETTTTEEECSSSEECSSSSCEEEEEEEEEEEEEEECT TSCEEEEEEEEEEETTCTTCCCEEEEEEECCSCGGGCC >sa_dssp DADBACCDABBCBBADCEECDDECDEEDCDCDBBADCBEEDCEECACABBDDDCCDACADADBEDEDCDADBEDDDEBEDCEBCACACEACBEEEECEBD DEDDBBBACACACBDDBEEECCACACCBCDCDDEEACE >ss_pred CCCCCCCEEEEEEEEEECCEEEECCCCCEEEEECEECCCCCCCHHHHHHHCCCCCCEEEEEEEEECCEEECCCCCCCCCCCCCCEEEECCEEEECCCCCC CCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCC >ss_conf 9644564279999885466111011022045301011345674245766413434404899611100354056656774666515740555884110267 88712338999997147886189996566248863359 >Consensus AvexmaGeWxVxvxxxxdgxxxexvfGxgxxxxnTYNTaxnxxxkmwvxxxxnxwxxkxkvxxnxxaxTFxxtgxxxnxxxxxxvxitxGKvlxxxaTtp xgxxxDsIxxxxxfxxdxxgxtYxvxGxRxTGxxxdex >c3h3iA_ AVEKXAGDWWVTVNAFIDGKEVEDPFGAGHLQXSTYNTASNSETEXWLDDLGNFWEYKLKVNVNYAARTFSTTGFVDNVTYESKVKITDGKVLEKAATTP SGXPADSIVYXVQFDDDEDGLTYKVSGFRRTGFPADDF >UniRef50_D0TES5(28-167:167) Putative uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TES5_9BACE E=9e-47 s/c=1.34 id=52% cov=100% ATEALAGEWYVTVDAVDEGSNVvaEDCFGLGYIHMNTYNTAADTQAEMYVDDLKNFWDFKVRVSSDVNAMTFATNGAMPNESYEgCDVTIDGGKILLEAA TTPHGTPADSIVYYVSFSDDEPGMRYKVSGYRYTGLAVDD- >UniRef50_C9PU87(33-174:174) Putative uncharacterized protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PU87_9BACT E=3e-42 s/c=1.21 id=39% cov=99% AVEQMAGFWDVRVHEVNaDGTLTQNVFGSRTYNLQTYNTVENVDDKMWVNiSVPKKWSMQLVTPINYGARTFSCQNVKamyndPNKDSPTLATITEGKVL EGQGRNLHGLPVDSIVFNVQFSTDSPAKTYRVTGTRHTGFTE--- >UniRef50_B7AEC3(30-167:167) Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7AEC3_9BACE E=1e-36 s/c=1.12 id=53% cov=96% AVEKMAGTWIVTWEAKNEAGKWEDILG-GTVELNTYNTAANVPTEMWVKE-GYLLNSAIKVSTDYNARTFSATGQTIAVAPEiwgdskIVVDVTDGKVLA GAATTPSGMPADSIVFFVNVQGDD---TYKIAGFRRTGFPADE- >UniRef50_C9KVH9(52-177:194) Putative uncharacterized protein n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9KVH9_9BACE E=5e-07 s/c=0.44 id=35% cov=82% -----------------DDDESYNVYGTYLYL---YNTADNDKDKLWIK-LPNTSLFKQgilgKISCNVEELTFNGTAgnmVADGTTPVGEFTVTSGKVT LESVTTPTNGKADGIEVKYTLE----GKTYTIKGFRRTGWDDDE- >UniRef50_A6L9A9(32-166:166) Putative uncharacterized protein n=3 Tax=Bacteroidales RepID=A6L9A9_PARD8 E=5e-06 s/c=0.39 id=26% cov=93% AIYPLCGEWVVNVTGEDGGVLAEGV------TCNTYNTTDDATDKMWIKMsvATNDWGVRGKIHCDVTSKSFDGDGIANLLHADDGINSTvtfniSGKVI VDGYTTQANTKVDAI----EFTLTQNGKSMTVKGFRKTGWEGEDY >UniRef50_B5D0B0(79-175:175) Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5D0B0_9BACE E=1e-05 s/c=0.53 id=41% cov=37% -------------------------------------------------------------------------------------TLTDGKLELNGATAP SGTVCDKISFTYTTTVD-PGVTYTVEGYRYTGWTED-- >UniRef50_C6W3F3(2-159:160) Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W3F3_DYAFD E=2e-22 s/c=0.50 id=43% cov=93% KLQAMCGEWW--INVLVDGEDI----GAGFNLVTTANTAANNETDLILDDHG-LWPAKIVTKVNLAGMTFNATPDLSN-EYDSDIKVSliEGKILKGAAT TPGGNKTDSLYVKFEFSDDA-GTQYEYAGYRRTGFREDE- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 274 * * * * * * * 2531 * * * * * * * * * * * 1 0 * * * * * * 2667 0 0 V 2 * * * * * * * 2325 * 2531 * * * * * * 2670 1088 * * 2 0 * * * * * * 2667 0 0 E 3 * * * 673 * * * * * * * * * 2531 * * * * * 2325 3 0 * * * * * * 2667 0 0 K 4 1599 * * * * * * * 1820 * * * 2325 2417 * * * * * * 4 0 * * * * * * 2667 0 0 X 5 * * * * * * * * * 1305 748 * * * * * * * * * 5 0 * * * * * * 2617 0 0 A 6 673 1424 * * * * * * * * * * * * * * * * * * 6 0 * * * * * * 2667 0 0 G 7 * * * * * 0 * * * * * * * * * * * * * * 7 0 * * * * * * 2667 0 0 D 8 * * 2951 917 2417 * * * * * * * * * * * 2701 * * * 8 0 * * * * * * 2667 0 0 W 9 * * * * * * * * * * * * * * * * * * 0 * 9 0 * * * * * * 2667 0 0 W 10 * * 2417 * * * * 2701 * * * * * * * * * 2325 1726 2670 10 274 * 2531 * * * * 2667 0 0 V 11 * * * * * * * * * * * * * * * * * 0 * * 11 0 * * * * * 0 2419 0 1000 T 12 * * * * * * * * * * * 2112 * * 2181 * 867 * * * 12 0 * * * * 0 * 2419 0 1000 V 13 * * * * * * * 2531 * * * * * * * * * 571 2701 * 13 0 * * * * * * 2667 0 0 N 14 * * 2670 2701 * * 2417 * * * * 1726 * * * * 2325 * * * 14 0 * * * * * * 2667 0 0 A 15 1184 * * 2417 * 2325 * * * * * * * * * * * 2531 * * 15 0 * * * * * * 2667 0 0 F 16 * * * 2325 2951 * * * 2701 2531 * * * * * * * 1538 * * 16 0 * * * * * * 2667 0 0 I 17 * * 1487 * * * * 2951 * * * 1552 * * * * * 2531 * * 17 299 2417 * 0 * * * 2667 1000 0 D 18 * * 822 1892 * 2602 * * * * * * * * * * * * * * 18 0 * * * * * * 2884 0 0 G 19 2949 * 2786 * * 463 * * * * * * * * * * * * * * 19 0 * * * * * * 2884 0 0 K 20 * * 2786 2777 * 2949 * * 3176 * * * * * * 2837 2606 2602 * * 20 0 * * * * * * 2884 0 0 E 21 * * 2777 1968 * * * * 2949 1604 * 2837 * * * * * * * * 21 0 * * * * * * 2884 0 0 V 22 2602 * * * * * * 2777 * * * * * * * 2786 2606 1997 2949 * 22 486 2837 2777 1000 1000 * * 2884 1000 0 E 23 * * * 640 * * * * * * * * * 2412 * * * * * 2552 23 0 * * * * * 0 2687 0 1000 D 24 * * 1129 * * 2441 * * * * * 1480 * * * * * * * * 24 0 * * * * * 0 2687 0 1000 P 25 * 2578 * * * * * 2717 * * * * 2860 * * * * 882 * * 25 294 * 2441 * * * 0 2687 0 1000 F 26 * * * * 742 * * * * 2452 * * * * * * * * * 2187 26 0 * * * * 989 1011 2364 0 1615 G 27 * * * * * 0 * * * * * * * * * * * * * * 27 240 * 2709 * * * 0 2577 0 1000 A 28 1475 * * * * * * * * 2320 * * * * * 2138 2232 * * * 28 0 * * * * 948 1054 2434 0 1606 G 29 * * * * * 688 * * * * * * * * 2359 * * * * 2441 29 0 * * * * * 0 2577 0 1000 H 30 * * * * 2566 * 2927 * * 2441 * * * * * * 1523 * * 2577 30 0 * * * * * 0 2577 0 1000 L 31 * * * * * * * 2577 * 2927 * 2566 * * * * * 2709 * 1399 31 0 * * * * 0 * 2577 0 1000 Q 32 * * * 2949 * * 2837 * * 1781 * 2606 * 3176 * * 2602 * * * 32 226 * 2786 * * * * 2884 0 0 X 33 * 2211 * * * * * * * 1340 2406 * * * * * * 2320 * * 33 0 * * * * * 0 2617 0 1000 S 34 * * * * * * * * * * * 970 * 2417 * 2951 2531 * * * 34 0 * * * * * 0 2667 0 1000 T 35 * * * * * * * * * * * * * * * * 0 * * * 35 0 * * * * 0 * 2667 0 1000 Y 36 2777 * * * * * * * * * * * * * * * * * * 227 36 0 * * * * * * 2884 0 0 N 37 * * * * * * * * * * * 0 * * * * * * * * 37 0 * * * * * * 2884 0 0 T 38 * * * * * * * * * * * * * * * * 0 * * * 38 0 * * * * * * 2884 0 0 A 39 576 * * * * * * * * * * * * * * * 2602 2606 * * 39 0 * * * * * * 2884 0 0 S 40 1268 * 1691 2606 * * * * * * * * * * * 3176 * * * * 40 0 * * * * * * 2884 0 0 N 41 * * 1715 * * * * * * * * 524 * * * * * * * * 41 0 * * * * * * 2884 0 0 S 42 2602 * 2786 * * * * * * * * 2777 * * * 3176 2837 1767 * * 42 0 * * * * * * 2884 0 0 E 43 * * 2606 1963 * * * * 2786 * * * 2949 2837 * * 2602 * * * 43 0 * * * * * * 2884 0 0 T 44 2837 * 1077 * * * * * * * * * * * * * 1373 * * * 44 0 * * * * * * 2884 0 0 E 45 * * 2777 1396 * * * * 1077 * * * * * * * * * * * 45 0 * * * * * * 2884 0 0 X 46 * * * * * * * * * 1620 568 * * * * * * * * * 46 0 * * * * * * 2848 0 0 W 47 * * * * * * * 2777 * * * * * * * * * * 486 2837 47 0 * * * * * * 2884 0 0 L 48 * * * * * * * 1691 * 1963 * * * * * * * 1205 * * 48 0 * * * * * * 2884 0 0 D 49 * * 1335 * * * * * 1187 * * 2606 * * * * * * * * 49 534 2606 2786 0 * * * 2884 1000 0 D 50 * * 1122 2701 * * * * * * 2325 * * * * 2417 * * * * 50 629 2325 2701 1000 1000 0 * 2667 1000 1000 L 51 2465 * * * * * 2599 * * 1103 * * * * * * * 2410 * * 51 0 * * * * 0 * 2750 0 1000 G 52 * * * * * 1373 * * 2837 * * * 1693 * * * 2602 * * * 52 227 * 2777 * * * * 2884 0 0 N 53 * * * * * * * * 2412 * * 600 * * * * * * * 2717 53 0 * * * * 0 * 2687 0 1000 F 54 * * 2602 * 1997 * * * 2606 1860 * * * * * * 2786 * * * 54 0 * * * * * * 2884 0 0 W 55 * * * * * * * * * 2949 * * * * * 2786 * * 463 * 55 0 * * * * * * 2884 0 0 E 56 * * 2837 3176 * 2602 * * * 2786 * 2949 2777 * * 2606 * * * * 56 0 * * * * * * 2884 0 0 Y 57 2777 * * * 1811 * * * * * 2606 * * * * 2949 * 2602 * 3176 57 0 * * * * * * 2884 0 0 K 58 2949 * * * * * * * 885 * * * * 2606 2602 * * * * * 58 0 * * * * * * 2884 0 0 L 59 * * * * * 2602 * 1860 * 1863 * * * 2786 * * * 2837 * * 59 226 2786 * 2000 415 * * 2884 1000 0 K 60 * * * * * * * * 863 * * * * * 2837 * * 1689 * * 60 0 * * * * * * 2884 0 0 V 61 * * * * * * * 1691 * * * * * * * * 1689 1396 * * 61 0 * * * * * * 2884 0 0 N 62 * * * * * * 2602 * 2777 * * 3176 2606 * * 1271 * * * * 62 0 * * * * * * 2884 0 0 V 63 * 1691 * * * * * 2606 * * * * * * * 2837 2949 1963 * * 63 0 * * * * * * 2884 0 0 N 64 * * 1204 * * * * * * * * 822 * * * * * * * * 64 0 * * * * * * 2884 0 0 Y 65 * * * * * * * * * 2777 * * * * * * * 1153 * 1306 65 0 * * * * * * 2884 0 0 A 66 1963 * * 2786 * 2606 * * * * * 1892 * * * * 2602 * * * 66 0 * * * * * * 2884 0 0 A 67 877 * * 2786 * 2777 * * * * * * * * * 2602 * * * * 67 0 * * * * * * 2884 0 0 R 68 * * * * * * * * 2602 2786 1807 * * * 1306 * * * * * 68 0 * * * * * * 2884 0 0 T 69 * * * * * * * * * * * * * * * 2602 260 * * * 69 0 * * * * * * 2884 0 0 F 70 * * * * 0 * * * * * * * * * * * * * * * 70 0 * * * * * * 2884 0 0 S 71 2837 * 2602 * * * * * * * * 1781 * * * 1306 * * * * 71 0 * * * * * * 2884 0 0 T 72 1860 2606 * * * 1691 * * * * * * * * * * 1997 * * * 72 0 * * * * * * 2884 0 0 T 73 * * 2602 * * * * * * * * 2837 * 2606 * * 913 * * * 73 0 * * * * * * 2884 0 0 G 74 2786 * * * * 876 * * * * * 2606 2777 * * * * * * * 74 226 2786 * 1585 585 * * 2884 1000 0 F 75 2837 * 2777 * 3176 * * 2602 * * * * * 2949 * * * 1693 * * 75 0 * * * * * * 2884 0 0 V 76 1691 * * * * * * * 2606 2777 2837 * * * * * 2949 3176 * * 76 259 2606 * 2322 322 * * 2884 1000 0 D 77 * * 1968 * * * * 2949 * * * 2602 1717 * * 2777 * * * * 77 0 * * * * * * 2884 0 0 N 78 2949 * * * * 2786 * * * 2602 * 835 * * * * * * * * 78 227 * 2777 * * * * 2884 0 0 V 79 * * * 2578 * * * * 2412 2441 * * * * * * 2552 1786 * * 79 0 * * * * 0 * 2687 0 1000 T 80 2949 * 2606 2777 * * 2602 * * * * * * * * 2837 1968 * * * 80 0 * * * * * * 2884 0 0 Y 81 2602 * * * * * * * * * * * 1865 * * 2606 * * * 1335 81 0 * * * * * * 2884 0 0 E 82 * * 1687 1396 * * * * * * * * 2606 * * * * 2786 * * 82 453 1892 * 1805 486 * * 2884 1461 0 S 83 * 2837 2602 * * 2786 * 2949 * * * * * * * 1963 2606 * * * 83 0 * * * * * * 2884 0 0 K 84 * * 1807 2786 * 2602 * * 3176 2606 * * * * * * * 2949 * * 84 0 * * * * * * 2884 0 0 V 85 2606 * * * 2786 * * 1687 * * * * * * * * * 1396 * * 85 0 * * * * * * 2884 0 0 K 86 * * 3289 * * * * * 2111 * * 2713 * * * * 961 * * * 86 0 * * * * * * 2624 0 0 I 87 * * * * * * * 1506 * 2887 * * * * * 2713 * 1473 * * 87 0 * * * * * * 2624 0 0 T 88 * * 3113 * * * * * * * * * * * * 2855 422 * * * 88 496 1782 * 1851 468 * * 2624 1612 0 D 89 * * 1596 1830 * 3113 * * * * * * * * * 1877 * * * * 89 0 * * * * * * 2624 0 0 G 90 * * * * * 0 * * * * * * * * * * * * * * 90 0 * * * * * * 2624 0 0 K 91 * * * * * * * * 0 * * * * * * * * * * * 91 0 * * * * * * 2624 0 0 V 92 * * * * * * * 1978 * 2887 * * * * * * * 711 * * 92 0 * * * * * * 2624 0 0 L 93 * * * 2887 * * * 2713 * 755 * * * * * * 3061 * * * 93 0 * * * * * * 2624 0 0 E 94 3289 * * 2081 * * * * 2855 1432 * * * * * * * 2713 * * 94 0 * * * * * * 2624 0 0 K 95 * * 2713 2087 * 1382 * * 3422 * * 2887 * * * * * * * * 95 0 * * * * * * 2624 0 0 A 96 1154 * * * * 1798 * * * * * * * 2805 * 3061 * * * * 96 0 * * * * * * 2624 0 0 A 97 775 * * * * 2805 * * * * * * * * * * * 3061 * 2713 97 0 * * * * * * 2624 0 0 T 98 * * * * * * * * * * * * * * 2805 * 223 * * * 98 0 * * * * * * 2624 0 0 T 99 2887 * * * * * * * * * * 2805 * * * * 470 * * * 99 0 * * * * * * 2624 0 0 P 100 * * * * * * * * * 2805 * * 506 2713 * * * * * * 100 0 * * * * * * 2624 0 0 S 101 2713 * * * * 2855 1951 * * * * * * * * 1596 3061 * * * 101 0 * * * * * * 2624 0 0 G 102 * * * * * 459 * * * * * 1877 * * * * * * * * 102 0 * * * * * * 2624 0 0 X 103 * * * * * 2968 * * * 2665 3066 2739 * * * * 1167 * * * 103 0 * * * * * * 2618 0 0 P 104 * * * * * * * * 1284 * * * 1138 * * * * 2887 * * 104 0 * * * * * * 2624 0 0 A 105 1214 2887 * * * * * * * * * * * * * * 2855 1758 * * 105 0 * * * * * * 2624 0 0 D 106 * * 0 * * * * * * * * * * * * * * * * * 106 0 * * * * * * 2624 0 0 S 107 2713 * * * * 3061 * * 2887 * * * * * * 755 * * * * 107 0 * * * * * * 2624 0 0 I 108 * * * * * * * 215 * 2855 * * * * * * * * * * 108 239 * 2713 * * * * 2624 0 0 V 109 * * * 2738 * * * * * * * * * * * 2634 * 912 * 2665 109 0 * * * * * 0 2384 0 1000 Y 110 * * * * 1162 * * * * * * * * * * * * 1701 * 2026 110 0 * * * * * 0 2384 0 1000 X 111 * * * * 2834 * * * 1582 * * 2416 * * * * 2493 * * 2639 111 0 * * * * * 0 2371 0 1000 V 112 * * * * 2665 * * * * * * * * * * * * 912 * 1685 112 0 * * * * 0 * 2384 0 1000 Q 113 * * * 1782 * * * * * * * 3289 * 2081 * 3113 1972 * * * 113 0 * * * * * * 2624 0 0 F 114 * * * * 638 * * * * 3061 * * * * * * 2887 3289 * * 114 0 * * * * * * 2624 0 0 D 115 * * 3422 3061 * * * * * * * * * 3289 * 1333 1798 * * * 115 184 * 3061 * * * * 2624 0 0 D 116 * * 1365 * * 3071 * * * 2473 * * * * * * 2688 2667 * * 116 0 * * * * * 0 2516 0 1000 D 117 * * 286 * * * * * * * * * * * * * 2473 * * * 117 247 * 2667 * * * 0 2516 0 1000 E 118 2531 * 2701 1804 * * * * * * * * * 2325 * 2417 * * * * 118 571 * 1613 * * 916 1089 2667 0 1433 D 119 * * 2592 * * * * * * * * 2150 716 * * * * * * * 119 0 * * * * 585 1585 2208 0 1949 G 120 2662 * * * * 248 * * * * * * * * * * * * * * 120 0 * * * * * 0 2565 0 1000 L 121 * * * * * * * * 1132 3145 2960 * * * * * 2701 2753 * * 121 0 * * * * 0 * 2565 0 1000 T 122 * * * * * * * * * * * * * 2855 3113 2713 752 * * * 122 0 * * * * * * 2624 0 0 Y 123 * * * * * * * * * * 2713 * * * * * * * * 239 123 0 * * * * * * 2624 0 0 K 124 * * * 2855 * * * * 1684 * * * * * 2805 * 1295 * * * 124 0 * * * * * * 2624 0 0 V 125 * * * * * * * 2170 * * * * * * * * * 645 * 2855 125 0 * * * * * * 2624 0 0 S 126 2056 * * 2887 * * * * 1877 * * * * * * 2259 2805 * * * 126 0 * * * * * * 2624 0 0 G 127 * * * * * 0 * * * * * * * * * * * * * * 127 0 * * * * * * 2624 0 0 F 128 * * * * 1096 * * * * * * * * * * * 2805 * * 1362 128 0 * * * * * * 2624 0 0 R 129 * * * * * * * * * * * * * * 0 * * * * * 129 0 * * * * * * 2624 0 0 R 130 * * * * * * 2805 * 2713 * * * * * 1140 * * * * 1996 130 0 * * * * * * 2624 0 0 T 131 * * * * * * * * * * * * * * * * 0 * * * 131 0 * * * * * * 2624 0 0 G 132 * * * * * 0 * * * * * * * * * * * * * * 132 0 * * * * * * 2624 0 0 F 133 * * * * 1068 * * * * 3113 * * * * * * * * 1295 * 133 0 * * * * * * 2624 0 0 P 134 3113 * 3061 2713 * * * * * * * * 2354 * 2855 * 1846 * * * 134 0 * * * * * * 2624 0 0 A 135 2354 * 3061 1264 * 2713 * * * * * * * * * * * 3113 * * 135 0 * * * * * * 2624 0 0 D 136 * * 289 2463 * * * * * * * * * * * * * * * * 136 0 * * * * * * 2460 0 0 D 137 * * 1004 996 * * * * * * * * * * * * * * * * 137 0 * * * * * * 2618 0 0 F 138 * * * * 948 * * * * * * * * * * * * * * 1054 138 0 * * 0 * * * 1576 0 0 //