HHsearch 1.5 NAME c3h01A_ FAM FILE c3h01A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3h01A_.a3m DATE Sat Aug 28 16:57:44 2010 LENG 54 match states, 54 columns in multiple alignment FILT 44 out of 48 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.8 EVD 0.5064 2.6980 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC >sa_dssp EEEECEEEEDDEDDDEDDDDDEEEDEEDEDEEEEEDDDDDEEEDEDDDEDEEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >ss_conf 966898887699999999999999999999997550332353884999999649 >Consensus eWxrxixnxtxxIxxlLexAqxqqekNxxeLxxLxxWxxlwnWFdisxWlxyik >c3h01A_ EWDREINNYTSLIHSLIEESQNQQEKLEQELLELDKWASLWNWFNITNWLWYIK >UniRef50_Q64FP6(81-131:144) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64FP6_9HIV1 E=4e-05 s/c=0.97 id=43% cov=94% -WDKEISNFHTDIYSLIEDRRTSRKRMNRTYWHLDKWQILGNWVSISNWLW--- >UniRef50_Q699W2(632-685:870) Env protein n=5 Tax=Primate lentivirus group RepID=Q699W2_SIVCZ E=0.0004 s/c=0.85 id=38% cov=102% EWEMKVANYTDEWEGALQRAQEQQERNVHALQSLQDWDSLWNWFDLSRWFWWIR >UniRef50_P27977(657-710:877) Transmembrane protein gp41 n=1300 Tax=Primate lentivirus group RepID=ENV_SIVVG E=1e-07 s/c=1.07 id=33% cov=102% EWERQISYLEGNITTQLEEARAQEEKNLDAYQKLSSWSDFWSWFDFSKWLNILK >UniRef50_B2LT44(589-642:713) Envelope glycoprotein gp160 n=1528 Tax=Primate lentivirus group RepID=B2LT44_9HIV2 E=9e-07 s/c=1.01 id=35% cov=102% EWEQKVRYWEANISQSLEQAQIQQEKNLYELQKLNSWGVFTNWLDFTSWVRYIQ >UniRef50_B7UES4(645-698:843) Env protein n=1 Tax=Simian immunodeficiency virus - olc RepID=B7UES4_SIVCZ E=8e-05 s/c=0.90 id=27% cov=102% KWQRKVDNLTQEIDDRLTIAYQEQQRNQYELQRFQELSDWTKWFNLANWMTYVK >UniRef50_Q3Y657(80-115:137) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y657_9HIV1 E=0.0006 s/c=1.26 id=46% cov=69% ----KLSNYTDTIYKLLEDSQIQQENNEKELLALAVGQSV-------------- >UniRef50_Q9WPP0(667-719:919) Envelope glycoprotein n=50 Tax=Lentivirus RepID=Q9WPP0_SIVCZ E=1e-10 s/c=1.28 id=28% cov=100% EWDRQVKMYDDNITALLQEAYVTELENQNKFKQLQEF-NFWSWLDLSQWFLYIK >UniRef50_P22380(683-736:821) Transmembrane protein gp41 n=133 Tax=Simian immunodeficiency virus RepID=ENV_SIVGB E=1e-08 s/c=1.12 id=24% cov=102% EWETRTDYLQQNITEMLKQAYDREQRNTYELQKLGDLTSWASWFDFTWWVQYLK >UniRef50_Q99FH6(626-678:837) Envelope glycoprotein n=1 Tax=Simian immunodeficiency virus RepID=Q99FH6_SIVCZ E=0.0001 s/c=0.91 id=30% cov=100% QWHERVRNYTDIIEADLVEAYDLQEENEKKLAELGDWTNWFSGFGLFNIFKYV- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 869 * * * * 3826 * * * * 1389 * * * * * * 1 0 * * * * * * 3414 0 0 W 2 * * * * * * * * * * * * * * * * * * 0 * 2 0 * * * * * * 3597 0 0 D 3 * * 1378 1335 * * 3354 * * * * * * 4092 * 5118 * * * 4902 3 0 * * * * * * 3619 0 0 R 4 * * * 4044 * * * * 1860 4760 5088 * * 4307 1080 * 3756 * * * 4 0 * * * * * * 3671 0 0 E 5 * * 4636 1943 * * 5437 * 2539 3194 * 4819 * 2648 2691 4458 * * * * 5 0 * * * * * * 3772 0 0 I 6 * * * * * * * 1190 * 4463 * * * * * * 3229 1287 * * 6 0 * * * * * * 3774 0 0 N 7 2990 * 1899 5849 * 6448 * * 4287 * * 3242 * 5328 3135 1828 * * * * 7 0 * * * * * * 3774 0 0 N 8 4643 * * 4922 5685 * * * * * 4287 663 * * 4826 4460 4706 * * 3239 8 0 * * * * * * 3774 0 0 Y 9 5970 * 4991 * 3768 * * 5444 * 1448 * * * * * 4565 * 5452 5234 1329 9 0 * * * * * * 3774 0 0 T 10 * * 4287 2551 4643 * 3768 * * * 4706 * * 3871 * 3556 1080 * * * 10 0 * * * * * * 3774 0 0 S 11 3426 * 2157 * * 1855 * * * * * 5908 * 2646 * 3128 3113 * * * 11 0 * * * * * * 3895 0 0 L 12 * * 3728 3386 * * 5625 3280 5757 3377 * 1430 * 5352 * * 2880 4070 * * 12 0 * * * * * * 3894 0 0 I 13 * * * * * * * 106 * * * * * * * * * 4621 5060 * 13 0 * * * * * * 3894 0 0 H 14 * * 3781 3702 4588 * 5727 * * * * * * 4617 * 2061 2767 * * 1463 14 0 * * * * * * 3894 0 0 S 15 3335 * 2334 3201 * 4367 * 6295 3169 * * 3861 * 3772 6495 2713 4795 3647 * * 15 0 * * * * * * 3894 0 0 L 16 3237 * 4416 4447 * * * 5352 * 970 3829 * * 5339 4253 4035 4113 * * * 16 0 * * * * * * 3894 0 0 I 17 * * * * * * * 2196 * 355 * * * * * * * * * * 17 0 * * * * * * 3859 0 0 E 18 4722 * * 1156 * 6247 * * 2993 * * * * 2347 5611 * 4239 3256 * * 18 0 * * * * * * 3859 0 0 E 19 5707 * 3046 1479 * * * 3700 3344 5131 * 3870 * 2477 5202 * * 5513 * * 19 0 * * * * * * 3859 0 0 S 20 534 * * * * * * * * * * * * * 3231 2302 * * * * 20 0 * * * * * * 3859 0 0 Q 21 * * * * * * 2824 * 4938 * * * * 875 3358 * * * * 2448 21 0 * * * * * * 3859 0 0 N 22 3438 * 2905 2639 * * * 2743 * * * 2596 * 4239 5131 5812 3030 3697 * * 22 0 * * * * * * 3859 0 0 Q 23 * * * 4239 * * 4722 * * 4499 * * * 636 4951 3231 3599 * * * 23 0 * * * * * * 3859 0 0 Q 24 * * * 2139 * * 4880 * * * * * * 661 3231 * * * * * 24 0 * * * * * * 3859 0 0 E 25 * * * 698 * * * * 3759 4217 * 4225 * 2303 * * * * * * 25 0 * * * * * * 3859 0 0 K 26 * * * 2982 * * * * 1399 * * 3780 * 4033 1755 4534 5584 * * * 26 0 * * * * * * 3859 0 0 L 27 * * * * * * * * * 4361 3759 252 * * * * 4722 * * * 27 0 * * * * * * 3859 0 0 E 28 * * * 1587 * * * * 3781 3245 3719 3759 * 2886 * * 4292 2710 * * 28 0 * * * * * * 3859 0 0 Q 29 * * 3634 * 4048 * 2511 * 1992 * * 4217 * 2905 3314 * * * * 2791 29 0 * * * * * * 3859 0 0 E 30 3461 * 2079 1351 * * * * 2738 * * * * 4136 * * 3759 * * * 30 0 * * * * * * 3859 0 0 L 31 * * * * 4217 * * * * 361 * * * * * * * 4758 * 2936 31 0 * * * * * * 3859 0 0 L 32 4499 * * 4880 * * * * 4217 1395 * * * 1346 * * 5611 * 4319 5384 32 0 * * * * * * 3859 0 0 E 33 2457 * * 2108 * * 4358 * 1562 * * * * 3944 4197 3663 * * * * 33 0 * * * * * * 3802 0 0 L 34 * * * * 4197 * * * * 81 * * * * * * * * * * 34 0 * * * * * * 3802 0 0 D 35 4649 * 1414 * * 3457 * * * 5260 * 2962 * 2450 * 4957 5006 4125 * 4801 35 0 * * * * * * 3732 0 0 K 36 * * 2094 2357 * * * * 2141 * * * * 4778 * 1820 * 5363 * * 36 0 * * * * * * 3732 0 0 W 37 * * * * 4320 4649 * * * 3083 * * * * * * * * 336 * 37 74 * 4320 * * * * 3732 0 0 A 38 2384 * 2476 * * 3810 * * 5349 * * 5780 * 3494 * 2357 2116 * * * 38 48 4939 * 1585 585 0 * 3629 1000 1000 S 39 * * 2416 * * 4459 * 3574 * * * 2232 * * * 1269 5114 5234 * * 39 0 * * * * * * 3732 0 0 L 40 * * * * 2406 * * 5490 * 955 4571 * * * * * * 5363 2273 * 40 0 * * * * * * 3732 0 0 W 41 4834 * * * 4062 2807 * * * 3698 * * * * * * 3552 * 737 * 41 0 * * * * * * 3731 0 0 N 42 * * 4885 5112 * * * * 4118 * * 1126 * * * 1338 5270 * * * 42 47 4964 * 1585 585 * * 3731 1000 0 W 43 * * * * * 4062 * * * * * * * * * * * * 89 * 43 0 * * * * * * 3731 0 0 F 44 * * * * 381 * * * * 2637 * * * * * * * 3814 * * 44 0 * * * * * * 3731 0 0 N 45 * * 672 * * 3971 * * * * * 2267 * * * 3618 5679 * * * 45 0 * * * * * * 3600 0 0 I 46 * * * * 3386 * * 1055 * 1396 4534 * * * * * * * * * 46 0 * * * * * * 3600 0 0 T 47 3982 * 4534 * 3971 * * * * * * * * * * 1230 1515 * 4221 * 47 0 * * * * * * 3600 0 0 N 48 5575 * * * * * * * 1526 * * 1567 * 3477 4461 3625 * * 3683 * 48 0 * * * * * * 3707 0 0 W 49 * * * * * * * 4042 * * * * * * * * * * 90 * 49 0 * * * * * * 3707 0 0 L 50 * * * * 1823 * * 5465 * 852 4086 * * * * * * 3614 * * 50 0 * * * * * * 3707 0 0 W 51 * * * * * 4010 * * 2237 4314 * 4905 * 4112 3832 * 4086 * 1135 * 51 0 * * * * * * 3707 0 0 Y 52 * * * * * * * 4845 * * * * * * * * * * 2158 432 52 0 * * * * * * 3609 0 0 I 53 * * * * * * * 666 * 2558 5244 * * * * * * 2525 * * 53 0 * * * * * * 3501 0 0 K 54 * * * * * * * * 447 * * * * 3374 2556 * * * * * 54 0 * * 0 * * * 3312 0 0 //