HHsearch 1.5 NAME c3enoC_ FAM FILE c3enoC_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c3enoC_.a3m DATE Tue Mar 9 07:49:48 2010 LENG 77 match states, 77 columns in multiple alignment FILT 34 out of 38 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4461 1.0300 SEQ >ss_dssp CEEEEEEEECSSHHHHHHHHHHHHHHHHHCSCCSSEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHC >sa_dssp ECECECECEBEDEECAEDACEDBCEDCEECEEDDBEBDBDCEDCCAABCBDAEDEDCCECBCDCBDECBEDBCDEDE >ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHC >ss_conf 92479999967977899999998656411668832899998499899999973378989878899999999998609 >Consensus xxxxxlxxefxxxxxAxxIyxsixpExxxxxxxRSxxxlxxxxxxlxixIxAxDlxaLRAxlNtwLRlIxvaxeixe >c3enoC_ RVQAKIEMEFPSEDVAKVVYEAVLYEHLSVPYRRSEIDFKLEGKKIILDIKATDSSALRGTVNSYLRWIKAAIDVIE >UniRef50_Q2NEX1(9-85:86) Putative uncharacterized protein n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NEX1_METST E=3e-15 s/c=1.08 id=31% cov=101% NIETIFEVEFNSENHAQIIYNSIKPELSFSRNDRSTTTIQLKNKSIIIEINSKDVVSLRASINSYVRWINLSMEILK >UniRef50_C9RDR4(5-76:80) Putative uncharacterized protein n=2 Tax=Methanocaldococcus RepID=C9RDR4_METVM E=7e-12 s/c=0.99 id=36% cov=95% ----ELKISFDSEEEAEIIYKAILLEHKSSQI-RSSATMEIHKNIITINVKAEDLSILKASIYSYLRWIGVAKNTYE >UniRef50_Q5V1M3(6-79:83) Putative uncharacterized protein n=1 Tax=Haloarcula marismortui RepID=Q5V1M3_HALMA E=4e-06 s/c=0.71 id=23% cov=97% --QTRLTAEYSSADRARAIEQSIRPEINDIEGDRTTARLSRDGQRVELTVAASDLVALRAGINTWLTLRGVAENAL- >UniRef50_D1Z1X3(6-74:80) Putative uncharacterized protein n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1X3_METPS E=7e-16 s/c=1.23 id=36% cov=91% -------VEFAFGPVAGKVHEALKPELQAAPSERSRIELRQDGGLLTLFIEAEDIISLRAALNTWLRLIKIAGEML- >UniRef50_Q05E10(14-75:93) Putative uncharacterized protein n=1 Tax=Aeropyrum pernix RepID=Q05E10_AERPE E=0.0008 s/c=0.72 id=22% cov=77% ---------------SEAIYRSLEAEARQRGPSKGVVKLGMDDGCVVLHIRARDLAGLRAITNSFLLLIHASL---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * * * * 1585 * * 585 * * * * * 1 0 * * * * * * 1964 0 0 V 2 * * * * * * * 583 * * 2451 * * * * * * 2741 * * 2 0 * * * * * * 2623 0 0 Q 3 * * * 978 * * * * 3068 * * * * 1800 3539 * * * * * 3 0 * * * * * * 3293 0 0 A 4 1007 * * * * 2611 * * * * * * * * * 3344 2058 * * * 4 0 * * * * * * 3442 0 0 K 5 * * 2779 1975 * * * 4043 2617 * * * * * 3092 * 4365 2248 * * 5 0 * * * * * * 3907 0 0 I 6 * * * * 4212 * * 2019 * 784 4061 * * * * * * 4094 * * 6 0 * * * * * * 3994 0 0 E 7 4128 * 3475 1163 * * * * 4535 * * * * * * 3039 2928 3183 * * 7 0 * * * * * * 4119 0 0 M 8 2118 * * * 2421 * * 2115 * 3218 4721 * * * * * * 2669 4338 * 8 0 * * * * * * 4146 0 0 E 9 4497 * 3560 781 * * * 4236 * * * * * * 3548 3555 * 3941 * * 9 61 * 4601 * * * * 4146 0 0 F 10 * * * * 838 4674 * * * 4128 * * * * * * 4505 * * 1737 10 0 * * * * * 0 4125 0 1000 P 11 4773 4674 2268 1637 * * * * 4128 * * 4487 3114 * * 4720 3501 4279 * * 11 65 * 4505 * * * 0 4125 0 1000 S 12 * * 3038 * 2516 * * * * 3465 * 3030 * * * 1399 3167 * * * 12 0 * * * * 0 * 4141 0 1591 E 13 4867 * 3722 1568 * 3248 * * * * * * 2203 3627 * 3893 4697 4523 * * 13 128 3556 * 0 * * * 4188 1514 0 D 14 4744 * 1753 2122 * * * * 3237 * * 4705 3680 3838 3599 4025 * * * * 14 70 * 4393 * * * * 4231 0 0 V 15 * * 2913 3051 * * 3178 * 4068 * 5013 * * 3708 3120 3791 3268 2490 * * 15 0 * * * * 0 * 4159 0 1000 A 16 346 * * * * * * * * * * * * * * 3171 * 3289 * * 16 51 4856 * 1585 585 * * 4350 1000 0 K 17 3928 * 5139 1637 * 5420 * * 3005 * * * 5226 4049 2264 3053 5605 * * * 17 37 * 5310 * * * * 4350 0 0 V 18 2209 * * * * * 5607 1998 4139 2888 * * * 5153 4309 5385 * 2195 * * 18 0 * * * * * 0 4353 0 1000 V 19 * * * * * * * 975 * 2939 * * * * * * * 1470 * * 19 0 * * * * * 0 4368 0 1000 Y 20 3457 * * 4174 4434 5388 5451 * * 4056 * * * * 5113 * * 5163 * 636 20 0 * * * * * 0 4368 0 1000 E 21 5648 * 5388 2248 * 5016 * * 3115 3907 * 2820 * 3724 1796 5186 * * * * 21 0 * * * * 0 * 4368 0 1000 A 22 1301 4760 * * * * * * * * * * * * * 993 5475 4941 * * 22 0 * * * * * * 4374 0 0 V 23 * * * * * * * 1966 * 1403 * * * * * * * 1450 * * 23 0 * * * * * * 4374 0 0 L 24 2869 4749 * 3337 4458 * * 4797 1926 2041 * * * 5414 3510 5143 * * * * 24 41 * 5143 * * * * 4374 0 0 Y 25 4369 * * 4895 * * * * * 3126 * * 964 3344 4307 * * 3547 * 4157 25 0 * * * * * 0 4359 0 1000 E 26 * * 4613 103 * * * * * * * * * * * 5171 * * * * 26 0 * * * * 0 * 4359 0 1000 H 27 3003 * * 4954 4797 * 2931 3053 * 2186 4749 * * * 4949 * 3839 2349 * * 27 0 * * * * * * 4374 0 0 L 28 3992 * 4093 3013 * 2065 * 5275 2655 4222 5173 4292 * 4488 4415 3744 * 4941 * * 28 0 * * * * * * 4374 0 0 S 29 4488 * 1627 2398 5101 * 4954 * 5143 4636 * * * 4415 5413 3080 3017 * * * 29 0 * * * * * * 4374 0 0 V 30 4107 * 3473 3615 * * * 2020 * * 3697 * 5138 5275 4415 2442 * 2631 * * 30 80 * 4217 * * * * 4374 0 0 P 31 * * 3264 3136 5153 2806 * 5315 * 4873 * * 1657 3322 5026 * 4726 3916 * * 31 88 * 4077 * * 0 * 4338 0 1537 Y 32 3817 * 2396 4966 * 2397 * 3240 * 4954 * 4095 4334 * 4672 2528 * * * 4098 32 178 4799 3644 0 * * 0 4334 1000 1580 R 33 4085 * 3044 2115 * 3818 4859 * 4712 * 5109 * 4121 4915 2428 4242 * * * 3519 33 0 * * * * 1017 983 4207 0 2334 R 34 * * * * * * * * 2932 * * * * * 269 4685 * * * * 34 44 * 5056 * * 0 * 4334 0 1580 S 35 * * * * * 3574 * * * * * * * * * 395 2687 * * * 35 0 * * * * 0 * 4359 0 1000 E 36 5412 5129 * 4122 4949 * * 4760 2431 * * 4941 * 5584 2118 3401 3056 3186 5200 * 36 0 * * * * * * 4374 0 0 I 37 1819 4458 * * * 5200 * 3266 * * 3973 * * * 4749 * 3604 1487 * * 37 0 * * * * * * 4374 0 0 D 38 * * 2665 3353 * 5202 * * 3342 * * 4162 * 4039 3116 2806 2276 4749 * * 38 0 * * * * * * 4374 0 0 F 39 * 5277 * * 4193 * * 1731 * 1436 3263 * * * 4749 * * 3217 * * 39 75 5200 5413 0 * * * 4374 1000 0 K 40 5253 * 2976 2522 * 4396 * * 3982 3886 * * * 5063 3711 2468 3362 * 5199 3597 40 38 5253 * 0 * 0 * 4361 1000 1000 L 41 3889 4941 * * * * * 5012 * 1675 3732 5129 * 3878 2269 * 5200 2744 * * 41 0 * * * * * * 4374 0 0 E 42 4217 * 1292 2786 * 4941 5012 4954 4023 * * 3932 * * 4636 3301 5138 * * * 42 40 5202 * 0 * * * 4374 1000 0 G 43 * * 2155 3491 * 1290 * * 5012 * * 2369 * 5275 * 5202 * * * * 43 38 5277 * 0 * * * 4374 1000 0 K 44 3866 4458 3138 4413 * 2362 4760 * 4203 * * 2451 * 5389 * 3183 3527 * * 4797 44 0 * * * * * * 4374 0 0 K 45 5412 4415 * * * 5044 * 5012 2782 5501 4749 3973 * * 2408 2616 2457 3914 * * 45 42 * 5138 * * * * 4374 0 0 I 46 * * * * 5174 * * 1784 * 1159 * * * * * * * 2094 * * 46 0 * * * * * 0 4359 0 1000 I 47 * * * 3705 * 4133 * 3064 3863 3831 * * * 4612 4430 5009 2117 1949 * * 47 0 * * * * 0 * 4359 0 1000 L 48 * * * * * * * 1204 * 1386 3995 * * * * * * 3051 * * 48 0 * * * * * * 4374 0 0 D 49 * * 4483 2315 4488 * 3201 5413 * * * 3374 * 4941 2789 * 2298 3317 * * 49 0 * * * * * * 4374 0 0 I 50 * 4458 * * 5082 * * 640 * * * * * * * * * 1819 * * 50 0 * * * * * * 4374 0 0 K 51 3232 4949 3218 2081 * * * * 3113 5082 * 5101 * * 3129 5173 3381 3248 * * 51 0 * * * * * * 4374 0 0 A 52 277 * * * * 3996 * * * * * * * * * 3159 * * * * 52 0 * * * * * * 4374 0 0 T 53 3297 * 2241 1520 * 5173 * * 4122 * * * * 5277 3710 3346 4257 * * * 53 0 * * * * * * 4374 0 0 D 54 * * 125 4458 * * * * 4745 * * * * * * * * * * * 54 0 * * * * * * 4374 0 0 S 55 4941 * * * * * * 3378 * 1199 * 5082 5037 * * 3154 5202 2082 * * 55 0 * * * * * * 4374 0 0 S 56 2388 * * * * * 5413 3205 * * * * 4749 * 5138 1941 3469 1939 * * 56 0 * * * * * * 4374 0 0 A 57 1038 * 5414 4954 * 4415 * 3709 * * * * * * 4949 1729 * * * * 57 0 * * * * * * 4374 0 0 L 58 * * * * 3973 * * * * 153 4760 * * * * * * * * * 58 0 * * * * * * 4374 0 0 R 59 * * * * * * * * 3709 * * * * * 115 * * * * * 59 0 * * * * * * 4374 0 0 G 60 182 * * * * 4193 * * * * * * * * * 3964 * * * * 60 0 * * * * * * 4374 0 0 T 61 1531 * * * * 2515 * 4415 * * 5143 * * * * 1816 3059 * * * 61 0 * * * * * * 4374 0 0 V 62 3862 5516 * * * * * 2330 * 1058 5037 * * 5203 * * 4415 2991 * * 62 0 * * * * * * 4374 0 0 N 63 * * * * * * * * * * * 230 * * * 4636 5037 * * 3709 63 0 * * * * * * 4374 0 0 S 64 4954 * * * * 4636 * * * * 3152 * * * * 1436 1167 * * * 64 0 * * * * * * 4374 0 0 Y 65 4797 * * * 3306 * * * * * * * * * * 5173 * 4636 874 2004 65 0 * * * * * * 4374 0 0 L 66 5416 * * * 3482 * * 4778 * 519 * * * * * 4009 4039 5070 * * 66 0 * * * * * * 4373 0 0 R 67 * * * * * * * * 4778 4407 * * * * 400 * 2946 * * 5120 67 0 * * * * * * 4373 0 0 W 68 * * * * 5090 * * 4730 * 854 4746 * * 5120 * * 4935 * 1831 * 68 0 * * * * * * 4373 0 0 I 69 * * * * * * * 1125 * 3677 * * * * 5317 * * 1191 * * 69 0 * * * * * * 4373 0 0 K 70 3422 * 5553 3208 * 4140 4407 * 1813 4730 * 2886 * 3437 5029 5248 4735 * * 5120 70 0 * * * * * * 4373 0 0 A 71 2535 * * * * * * 1914 * 2653 5395 * * * * * * 1399 * * 71 0 * * * * * * 4373 0 0 A 72 742 3086 * * * * * * * 4708 * * * * * 2024 * * * * 72 0 * * * * * * 4362 0 0 I 73 * 4862 4946 1840 * 5157 3624 5003 4645 2552 3324 * * 4936 * * 4827 3248 * 5059 73 0 * * * * * * 4246 0 0 D 74 * * 2004 864 * 4169 * * * * * 3493 * * 4135 * * * * * 74 0 * * * * * * 4139 0 0 V 75 4362 * * * * * * 1798 * * 2158 * * * * 3668 4571 1648 * * 75 0 * * * * * * 4126 0 0 I 76 * * * 4736 4731 * * 2316 * 1254 4596 * * * 4129 * 4418 4472 * 3127 76 0 * * * * * * 3981 0 0 E 77 * * * 363 * * * * 2715 * * * * 3832 * * * * * * 77 0 * * 0 * * * 3671 0 0 //