HHsearch 1.5 NAME c3dp5A_ FAM FILE c3dp5A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3dp5A_.a3m DATE Wed Jan 9 15:35:21 2013 LENG 99 match states, 99 columns in multiple alignment FILT 118 out of 747 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.0 EVD 0.4513 1.0427 SEQ >ss_dssp CCTTCCCCSCCCGGGCCCCCCHHHHHHHHTTTTSGGGCCSSSTTCCCCHHHHHHTTCCSHHHHHHHTTSCCTTSCCCCTTTSCHHHHHHHHHHHHHHCC >sa_dssp EDEEDEEEEDEDEEEEEEECDBDEBBEEDCCEDBDEBCCEEDEEDCCCDDEBCEEDCEDCEDBBEDBCECDEECEEBDEEEADDECADDAADDBDEDBE >ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC >ss_conf 964327875544456424784999999971764178877454566644012100001347788887752023333332357889999999999985187 >Consensus xxxxxxpxxxxxaxxaaxxaxGxxlyxxxCaxCHgxxGxgxxxxxxlxxxxxxxxxxxxxxxixxxixxgxxxMPxfxxxxlxxxdxxxvaxYvxsxxp >c3dp5A_ AASWSHPQFEKGAETAVPNSGGGELFATHCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRNPGPGMPAFGEAMIPPADALKIGEYVVASFP >UniRef50_Q8L386(28-115:125) Eugenol hydroxylase alpha-subunit n=3 Tax=Proteobacteria RepID=Q8L386_9PSED E=1e-05 s/c=0.58 id=20% cov=89% ---WGQPATPSPGATEPP-----DIYRRTCGYCHEPTySNDRFIAKSLGPT--LRGRFLPPAFTEYMVRHGKGAMPPFTESEVSQKELLDLGKWILES-- >UniRef50_Q3JFB3(371-478:497) Cytochrome c family protein n=65 Tax=Proteobacteria RepID=Q3JFB3_BURP1 E=2e-05 s/c=0.47 id=22% cov=98% -SAWGKPAEDgirlRGVALASTGIDPARLYLGNCASCHQMQGKGTPDGYYPQLFHNSTVGAPNPTNLVQVILNGVArkaggedvGMPAFRHE-LSDAQIA ALANYLTVQF- >UniRef50_A7IIK7(199-296:361) Cytochrome c class I n=3 Tax=Rhizobiales RepID=A7IIK7_XANP2 E=8e-05 s/c=0.49 id=19% cov=42% -------------------------------------------------------GMNRLVTIANFVHDNMPNGVSWVMPVLAPEEAWDVAAYVVS--- >UniRef50_C1CWL4(45-132:160) Putative cytochrome c, n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWL4_DEIDV E=0.0002 s/c=0.53 id=21% cov=76% ---------------------GARVYTQSCQGCHGDKLQG-GRSPALIGEKFLAKWADGKRPVADLHGYIAKNMPRNKPGTLTTAQALNVTAFVLS--- >UniRef50_B8GXV8(26-113:130) Cytochrome c-family protein n=2 Tax=Caulobacter vibrioides RepID=B8GXV8_CAUCN E=0.0005 s/c=0.51 id=21% cov=87% ---------SQAAQDQDPIARGKAIVTRSCSACHAVEVSGDSPNPTAPRFRQLHQRYDVEALAEGLAEGLTVGHGPMPEWTFPPADVSAIVAYL----- >UniRef50_Q2Y5Q4(28-120:220) Cytochrome c, class I n=6 Tax=Betaproteobacteria RepID=Q2Y5Q4_NITMU E=1e-06 s/c=0.58 id=22% cov=89% ------------VKTAGDAAKGQQIASQVCAACHGADGNSMIPANPNLAGQHAEYIIKQLNNFKSQDGKPAERDSAVMSAMvapLSDEDARNLAAYYAQQ KP >UniRef50_A0YHE8(112-209:212) Cytochrome c family protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YHE8_9GAMM E=0.0002 s/c=0.48 id=19% cov=27% ----------------------------------------------------------------------GKQMKMMATSLSAEKDLYDVIAYLHA--- >UniRef50_C6B8I2(54-151:175) Putative uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B8I2_RHILS E=0.0002 s/c=0.48 id=20% cov=77% ---------------------GQQRYMIYCTPCHDPAGYGNGRIPSRGFPHPPSFHTKRLRDASSGyvvdVITHGHGVMYSYADRVEPRDRWAIAAYVKA --- >UniRef50_Q0BRR9(202-296:299) Cytochrome c family protein n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BRR9_GRABC E=0.0003 s/c=0.49 id=22% cov=79% ------PQLALSPDAPARIKQGQKAFIAFCLPCHRLNGAGDGSVGPDLGKPMNPTAYFQRPALHRYIRDpasvrdwPGRQMPGFSAKTLP---------- ------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 937 * * * * * * * * * * * * * * 1065 * * * * 1 0 * * * * * * 2389 0 0 A 2 684 * * 3022 * * * * * * * * * * * 1974 * * * * 2 0 * * * * * * 3647 0 0 S 3 1563 * * * * * * * * 3294 * * * * 2171 1567 * * * * 3 0 * * * * * * 3826 0 0 W 4 * * * * * * * * * 3643 * * * * 2588 3332 * * 612 * 4 0 * * * * * * 4304 0 0 S 5 3544 * * * * 2321 * 3313 * * * * 3362 * * 1210 * 3575 * * 5 0 * * * * * * 4304 0 0 H 6 2624 * * 3634 * * 2506 * 2319 * 3313 * * 3337 * 2465 * * * * 6 0 * * * * * * 4304 0 0 P 7 * * * * * * * * * 3938 * * 327 2860 * * * * * * 7 0 * * * * * * 5015 0 0 Q 8 1654 * * 4152 * * * 4050 * * 3797 * 3521 1570 * * * * * 3842 8 0 * * * * * * 5180 0 0 F 9 * * * 2570 1800 * * 4013 * 2463 * * * * * 4000 3883 3197 * 4013 9 265 * 2573 * * * * 5585 0 0 E 10 3946 * 2593 1640 * 3174 * * 4558 * * * 4158 4083 * 3014 4147 * * * 10 89 4057 * 2000 415 1395 690 5783 1000 2093 K 11 4215 * * 4171 * * * * 2379 4072 * 4367 3562 3763 2620 2604 3251 * * * 11 0 * * * * * 0 5981 0 1547 G 12 2585 * * 4453 * 2205 * * * 4308 * * 3518 * 2869 2536 * 3015 * * 12 50 * 4885 * * 1016 984 6257 0 1547 A 13 1055 4730 * * * 4689 * * * * * 4959 3604 * 4846 2801 4830 3127 * * 13 43 5093 * 2000 415 * 0 6834 1000 1549 E 14 2435 * 2226 2889 5057 * * * 4576 5091 * 3931 4191 2939 * 4974 4189 5174 * * 14 0 * * * * 1100 907 7086 0 1549 T 15 3061 * 2956 4412 * 5340 * * 5510 4244 * 3658 * 5743 4232 3456 1566 5324 * * 15 0 * * * * 0 * 7354 0 1000 A 16 1270 * * 4080 * 3012 * * 4146 4710 5247 * 5346 4857 5190 3311 3776 5573 * * 16 0 * * * * * * 7572 0 0 V 17 1077 * 3504 5693 4931 3278 * * 5734 4571 * * 5533 4853 * 4480 3555 6083 * 5577 17 0 * * * * * * 7606 0 0 P 18 3521 * 2519 * * 5695 * 5433 5823 * * 4309 1965 2806 4542 4620 3273 5616 * 5550 18 68 5294 5586 1585 585 * * 7691 1000 0 N 19 2464 * * 5576 3872 3971 * 3094 * 4093 5824 2969 4603 * * 4304 2975 3181 6008 * 19 0 * * * * * 0 7753 0 1000 S 20 1423 6266 4619 5825 * 4575 * 5613 4470 5718 * 6016 4647 5265 4416 2368 3958 4547 * * 20 21 6095 * 1585 585 * 0 8131 1000 1000 G 21 3024 * 3129 2833 * 4583 4418 * 3560 6088 5588 4081 * 3752 3008 3766 4120 5323 * * 21 19 * 6243 * * * 0 8185 0 1000 G 22 5332 * * * * 76 * * * * * * 5239 * * * * * * * 22 16 6500 * 1000 1000 * 0 8457 1000 1644 G 23 2570 * * 3509 * 4472 4480 * 1647 5834 * * * 2279 3645 5005 * * * * 23 0 * * * * 1016 984 8457 0 1644 E 24 2672 * 4662 2894 * * 6443 5632 2796 * * 6125 * 2987 2596 4527 4292 3622 6395 * 24 18 6344 * 0 * 0 * 8486 1000 1000 L 25 5586 * * 5692 4809 * * 2400 5296 1095 * * * 6541 4737 * 5419 2561 * * 25 0 * * * * * * 8525 0 0 F 26 4680 * * * 1174 * * * * 6086 * * * * * * * 5070 * 1079 26 0 * * * * * * 8529 0 0 A 27 2221 * 4189 2928 * 4388 6454 5634 3992 5134 4615 3405 * 3494 4275 3696 4193 5563 * * 27 0 * * * * * * 8529 0 0 T 28 3171 * 5330 3966 * 4121 5015 5214 3514 4418 6696 5567 * 2674 3448 3647 2656 5420 6713 * 28 46 5794 6215 1585 585 * * 8529 1574 0 H 29 3699 * 5522 * 4371 * 2869 6175 4124 4624 6552 1987 * 4647 5222 4449 3799 4272 5361 3626 29 42 5107 * 0 * 0 * 8517 2165 1000 C 30 * 0 * * * * * * * * * * * * * * * * * * 30 0 * * * * * * 8559 0 0 A 31 883 * 6637 * 6812 4218 6571 4409 * 4370 * 5756 * 4812 6921 2886 5281 4538 6303 * 31 0 * * * * * * 8559 0 0 G 32 1850 * * 6261 6625 2700 6874 5725 5685 4675 5001 6709 4001 4801 5483 2355 5119 4434 * 5187 32 0 * * * * * * 8559 0 0 C 33 * 0 * * * * * * * * * * * * * * * * * * 33 0 * * * * * * 8559 0 0 H 34 * * * * * * 0 * * * * * * * * * * * * * 34 79 4560 6482 1389 694 * * 8559 2767 0 P 35 2757 * 6036 4875 * 904 6296 * * 5876 4612 6588 5818 4435 5205 5327 5792 4493 * 6792 35 43 5077 * 2502 280 * 0 8547 2280 1000 Q 36 2368 * 4195 3655 * 3427 5562 4773 4665 4725 6242 5904 3247 4419 5572 3956 3975 3257 6833 * 36 0 * * * * 0 * 8547 0 1000 G 37 3929 * 2198 3898 6535 2070 5658 6303 3321 * * 3448 * 3800 6881 6737 3907 5648 * * 37 106 4582 5104 1347 720 * * 8559 2697 0 G 38 3907 * 6923 6585 * 616 * * 4829 4619 * * 4904 4622 5404 5268 4790 5930 * 6597 38 43 5738 6565 596 1563 * 0 8349 1665 2603 N 39 3363 * 3673 2754 * 3483 6595 6726 3784 6443 5873 2774 6895 2798 4208 4169 4968 6634 * 6001 39 59 4636 * 3007 192 2060 396 8546 2948 3010 T 40 3396 * 5312 * 6917 793 6608 4369 6700 4772 6628 * 4488 * * 3977 7160 4834 6603 5713 40 107 6313 4078 3000 193 1676 542 8332 1000 2581 V 41 2846 * 3155 4826 6001 4725 * 3757 5508 3731 5243 4750 4536 4217 4446 4839 3995 2525 * 6505 41 55 5358 6248 0 * 1427 671 8303 1649 4068 H 42 3843 * * 5347 5370 1778 4523 5371 5145 4089 6899 3894 4654 3494 4559 3515 4959 4056 * 6784 42 129 4274 4882 2120 377 2403 302 8298 3115 3517 P 43 3312 * 5051 6094 5465 3162 5650 5558 4956 4299 6802 * 1496 5434 4000 4207 4478 5895 * 5013 43 164 3974 4516 1537 610 298 2423 8314 3587 4054 E 44 2021 * 4423 4761 4340 2029 6145 5326 5678 5687 6850 4685 4366 4331 6602 4430 4924 4979 * 5032 44 65 4817 6819 2803 223 2353 314 8517 2394 3143 K 45 3298 * 4891 5098 6014 3274 * 5180 3149 4542 * 4184 1850 6195 5485 4103 6335 4342 * 4475 45 46 5643 6451 1271 772 2350 315 8523 1700 3022 T 46 2796 * 5856 * 3921 3007 * * 4996 5661 5675 3378 2386 5658 * 3275 3015 5607 * 5455 46 55 * 4731 * * * 0 8521 0 3184 L 47 3530 * 4968 * 5691 4264 * 3825 5489 1317 * 5297 2669 * 5928 5500 * 4235 * 4591 47 40 * 5180 * * 1647 555 8506 0 4353 A 48 3053 * 3655 5655 4549 3332 * * 4192 3394 4745 3990 5260 4206 3827 3978 3713 4519 6544 4526 48 14 6689 * 2000 415 1266 775 8497 1000 4064 R 49 3127 * 3613 * 3318 3261 6643 3980 3750 3264 5612 6567 3804 5697 3202 5036 5913 4761 5530 6467 49 14 6662 * 0 * 958 1043 8507 1000 3121 A 50 2719 * 4517 4925 3951 3397 * 6645 4522 6743 * 5141 2566 5470 5113 3305 3695 3671 4964 6452 50 44 * 5042 * * * 0 8539 0 2053 R 51 2897 * 3244 3911 4616 3973 4568 6458 5146 4121 6648 3957 3884 4755 3359 3675 4417 5770 * 5061 51 43 * 5086 * * 2300 327 8499 0 2952 R 52 4431 6146 5016 5915 4574 4188 6013 4841 4424 2576 5520 3850 3839 3900 3544 3970 6831 4068 3926 5736 52 33 5447 * 2465 288 2565 267 8453 1805 3397 E 53 3333 * 6160 2966 6455 6776 4789 4467 4175 3168 6650 3880 3744 4029 3869 3533 4570 5188 5967 4786 53 59 5119 6468 2533 274 * 0 8485 2212 3277 A 54 3169 * 4999 4723 4359 4325 4521 4826 4232 4859 6560 3324 3572 4873 3457 3765 4125 4647 5087 4849 54 27 * 5776 * * 903 1104 8472 0 3392 N 55 4021 * 3914 4792 4953 3031 6040 6780 4071 4579 * 3207 5732 4883 4080 3488 3181 4089 6793 3871 55 72 6748 4678 2322 322 1604 576 8501 1000 3044 G 56 3060 * 4699 5153 * 2592 4409 5165 3632 3911 6120 4359 3672 4393 3115 6337 4405 * 6059 4429 56 32 6460 6601 2322 322 2960 198 8876 1000 3699 I 57 3550 * 3049 3753 5430 4921 4712 3172 3711 4429 3821 4572 4241 4965 5127 4131 4312 6770 * 4363 57 27 * 5732 * * 1960 428 8646 0 3703 R 58 4059 * 3270 4508 4178 3945 4830 4933 2969 3267 6309 4012 4589 6557 3111 4583 5210 * 5375 4744 58 31 6421 6714 2322 322 690 1395 8663 1000 3947 T 59 3757 * 3924 * * 4979 5493 5057 * 4977 4980 4006 3183 4296 4413 2457 2280 4196 * * 59 21 6127 * 0 * 436 1940 8840 1000 2575 V 60 3128 * 4711 3520 * 5007 * 3943 4358 2862 5671 5007 3328 4937 4277 5540 5811 2521 6477 5759 60 27 6569 6927 0 * 0 * 8849 1000 1000 R 61 2563 * 2917 2551 4608 4599 * 5326 3748 4603 8096 4755 4310 4638 3811 5553 4618 7151 * 4908 61 15 6560 * 1000 1000 0 * 8858 1000 1000 D 62 2870 * 3068 3326 4938 4370 4487 6473 5114 3952 * 3056 5484 4627 4967 3703 4021 * * 4045 62 14 6719 * 1000 1000 * * 8958 1000 0 V 63 4177 * * * 3741 4706 * 1915 * 1919 5938 * * * 6199 * 6374 2090 * 5315 63 0 * * * * * * 8958 0 0 A 64 2271 * 6661 4311 3633 5553 5275 4780 3110 4476 5322 5436 6289 5538 3865 4575 4386 3234 * 4045 64 17 6409 * 1000 1000 * * 8958 1000 0 A 65 2848 * 3741 3731 5783 3848 6703 4663 3567 4807 6580 4196 * 4500 3975 2853 3887 4413 * 5130 65 12 6973 * 0 * * * 8958 1000 0 Y 66 3915 * * 4914 4033 3913 * 3347 5248 3912 5056 6745 * 4501 4217 4201 4385 2731 4397 2793 66 38 6026 6550 2000 415 * * 8958 1000 0 I 67 3634 * 6100 6048 * * 6207 1696 6198 2440 4427 5249 * 6362 * 7891 3858 2305 6761 * 67 50 6207 5614 0 * * 0 8904 1000 1000 R 68 7042 * 5602 3784 * 4565 7043 3547 3112 3603 * 3992 * * 1808 4654 3318 4906 6528 4913 68 15 6588 * 3322 152 1537 610 8895 1000 2229 N 69 5609 * 3263 4334 4864 3626 3721 5432 4445 6294 6438 2096 * 3571 * 4378 3384 4736 * 4586 69 57 5660 5738 2807 222 * 0 8889 1428 1731 P 70 6005 * 6105 6620 * 868 5075 4758 * 5993 * 3541 2594 * 6416 4276 * 6091 * * 70 55 4752 * 2137 372 952 1050 8863 2155 2570 G 71 4433 * 4825 6168 4432 2246 4326 3404 2928 4275 4531 6806 5461 5751 3196 5324 4664 4583 * 6467 71 83 4487 6460 2017 409 * 0 8924 2824 1564 P 72 4424 * * 4252 * 2439 4366 * 4819 6697 5367 3710 1883 4005 4452 4675 3725 6019 * 6261 72 129 3545 * 2550 270 674 1422 8904 3912 2155 G 73 2513 * 4961 4995 * 1541 * 6312 4648 5436 4494 3621 5190 4394 4610 4743 5039 4923 * * 73 56 4724 * 2493 282 0 * 8911 2269 1000 M 74 * * 5855 * 5149 3708 5605 6747 6538 4609 762 * * 5640 5184 5153 4050 4772 * 4872 74 14 6735 * 2000 415 * * 10816 1000 0 P 75 5765 * * * * 3983 * 6635 5271 5920 3098 4777 804 * 5795 4214 4640 5804 * 6632 75 6 * 7964 * * * * 10763 0 0 A 76 1973 * * 5016 5594 3189 * * 4735 4859 3557 5606 2716 5364 4521 3108 6053 5613 * 4842 76 29 * 5651 * * * 0 10835 0 1000 F 77 3579 * 5376 5953 1340 5011 6201 7200 5709 5832 3961 5587 4892 5455 * 4682 4941 4662 4029 3657 77 125 6463 3807 0 * 1675 542 10875 1000 2009 G 78 2832 * 4114 4952 4350 2194 5096 * 5223 * 4551 4341 4026 5306 4723 3769 4421 4486 5070 4840 78 81 * 4189 * * 448 1904 10860 0 4257 E 79 3674 * 3348 2584 5137 3837 3244 * 3567 6305 5678 7136 3300 4290 4723 3990 4626 * 5715 5947 79 67 6654 4818 3170 170 409 2018 9871 1000 3884 A 80 2351 6848 4185 4866 7072 2567 * * 4034 5964 * 3917 3859 4875 4436 2866 4786 5958 5773 5080 80 106 6020 4180 1000 1000 0 * 8190 1000 3042 M 81 * 6708 4893 3663 5961 5006 5202 5321 4536 3560 3524 4799 * 2324 3277 4716 3502 3538 * 6326 81 57 5070 6819 1137 875 0 * 7939 1689 3551 I 82 5174 * * * 4995 5274 * 2778 * 763 5427 * 5687 * * 6491 6724 3326 * 5852 82 20 6177 * 2000 415 0 * 8055 1000 1000 P 83 3108 * 4006 4700 * 3958 * * 3959 * * 4428 2518 6467 6054 1655 3477 * * * 83 0 * * * * * * 7972 0 0 P 84 4116 * 1437 3198 * 4825 6447 * 4541 * * 6530 2006 4096 6007 5390 5903 * * * 84 17 6406 * 2585 263 * * 7882 1000 0 A 85 2106 * 3463 2098 * 2879 6125 * 3499 6273 * * 6358 3114 4721 6395 6125 * * * 85 0 * * * * * * 7882 0 0 D 86 * * 844 2578 * 6358 * * 4674 * * 5923 * 2547 * 6465 5311 * * * 86 0 * * * * * * 7882 0 0 A 87 2614 * * * * * * 2368 5231 2403 4711 * * 5078 3246 5920 6342 2492 * 4398 87 0 * * * * * * 7882 0 0 L 88 2265 * 4245 3412 * * 6258 6814 3312 3435 * 5639 5948 5540 4190 3942 4991 4846 2636 5288 88 0 * * * * * * 7882 0 0 K 89 1646 * 1712 3666 * 6387 6127 6258 2948 5923 6836 4808 * 6284 4995 7008 * 6102 * * 89 0 * * * * * * 7882 0 0 I 90 4526 * * * * * * 1746 * 2154 5418 * * * * * * 1285 * * 90 0 * * * * * * 7882 0 0 G 91 1133 * * * 5903 4022 6475 4367 * 4156 4677 * * * * 3541 4153 2723 * 5866 91 0 * * * * * * 7882 0 0 E 92 1482 * 3167 3442 5630 7061 5954 6265 4089 5637 4918 3387 * 3629 4631 * 5302 5996 * 6370 92 0 * * * * * * 7854 0 0 Y 93 * * * * 3292 * * * * * * * * * * * * * 3863 270 93 0 * * * * * * 7854 0 0 V 94 * * * * 5900 * * 2131 * 1733 5007 * * * * * * 1331 * 5295 94 34 * 5431 * * * * 7851 0 0 V 95 3519 * * * * * 5821 4140 3653 1838 3649 * * * 3622 3359 4674 2701 * 5171 95 0 * * * * 0 * 7528 0 1000 A 96 1507 * 5157 4848 * 4046 * * 5240 * * 5614 * 4242 * 1476 4267 6204 * * 96 0 * * * * * * 7512 0 0 S 97 2480 * * 4741 4366 4937 4858 4827 * 3923 * 3996 5014 3703 3941 2287 3303 5338 * * 97 65 4512 * 1000 1000 * * 6914 1000 0 F 98 4499 * * 4521 862 * * * 3111 * * * * 4551 * 3898 3649 * 4140 * 98 0 * * * * * * 6155 0 0 P 99 * * * * * * * * * * * * 0 * * * * * * * 99 0 * * 0 * * * 4617 0 0 //