HHsearch 1.5 NAME c3dgpB_ FAM FILE c3dgpB_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c3dgpB_.a3m DATE Wed Mar 10 06:24:42 2010 LENG 63 match states, 63 columns in multiple alignment FILT 33 out of 37 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4499 2.0099 SEQ >ss_dssp CCCCCCEEEECCHHHHHHHHHHHHHHCSSEEEEEETTEEEECGGGHHHHHHHHHHHHHSCSCC >sa_dssp EEEEEDCECECDEECBDCACEBCEEDEEACDDEDDEDCABACDECCEDBEECCEEDDDEDEEE >ss_pred CCCCEEEEEEECHHHHHHHHHHCCCCCCEEEEEECCCEEEECHHHHHHHHHHHHHHHHHCCCC >ss_conf 975102668627899999998447667234486178689986889999999999998630569 >Consensus xxAxkGvLixCDpxxkqxilxldexxxxFIIedLDethllvxxxxxxxlkxeixxxlxxNxxs >c3dgpB_ ARARKGALVQCDPSIKALILQIDAKMSDIVLEELDDTHLLVNPSKVEFVKHELNRLLSKNIYN >UniRef50_Q4HYI0(3-61:73) RNA polymerase II transcription factor B subunit 5 n=4 Tax=Sordariomyceta RepID=TFB5_GIBZE E=1e-05 s/c=0.86 id=39% cov=94% -RAIRGVLIECDPSIKSIIVSIDSANHDYIIEDLDDERVVVKENMVSMLKAKLEDVPTK---- >UniRef50_A8NMB1(2-62:65) Predicted protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NMB1_COPC7 E=7e-05 s/c=0.80 id=39% cov=98% -RAIKGVLLTCDPAVKQILLAMNEK-QNFIIEDLDDYHLVIKADDEMRVRRELEAELEKNTYS >UniRef50_Q6ZYL4(5-67:71) General transcription factor IIH subunit 5 n=34 Tax=Metazoa RepID=TF2H5_HUMAN E=7e-12 s/c=1.14 id=28% cov=95% ----KGVLIECDPAMKQFLLYLDESNalgKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAFS >UniRef50_C1E0T4(4-67:75) Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E0T4_9CHLO E=2e-11 s/c=1.10 id=37% cov=98% --AVHGSLIETDIPCKVYILHINEQLPpaeRFVIQDLDETHLLVQPHRLEYVKAEVKAWQQKNQFT >UniRef50_Q84QI3(4-68:78) REX1-S n=1 Tax=Chlamydomonas reinhardtii RepID=Q84QI3_CHLRE E=2e-09 s/c=0.97 id=26% cov=97% --AKKGLLLRCDVPTKVYIVHMNSQyraegKKEFIIADLDETTLLINPAYELEIRAALKKYSDELTF- >UniRef50_Q55CT8(5-66:72) General transcription factor IIH subunit 5 n=1 Tax=Dictyostelium discoideum RepID=TF2H5_DICDI E=3e-05 s/c=0.80 id=27% cov=95% ---YKGLFLECDPPTKQFVEYISKQEHFEVI-VLDETHLFLQggdEKVINSIQRRIDDLQNQNTYS >UniRef50_B3L9Z8(4-58:67) Nucleotide excision repair protein, putative n=4 Tax=Plasmodium RepID=B3L9Z8_PLAKH E=0.0001 s/c=0.86 id=30% cov=89% --AIKGVLVKCDEPTMQIILLMNEGKN-FLIEKISDTVCLCKENVYDFLEKEVIRQLE----- >UniRef50_Q9LNA6(45-108:113) F5O11.12 n=2 Tax=Arabidopsis thaliana RepID=Q9LNA6_ARATH E=4e-14 s/c=1.24 id=26% cov=97% --AIKGVFVSCDIPMTQFIVNMNNSmppSQKFIIHVLDSTHLFVQPHVEQMIRSAISDFRDQNSY- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 890 * * * * * * * * * * * * * * * 1119 * * * 1 0 * * * * * * 2143 0 0 R 2 * * * * * * * * 2282 * * 2641 * * 657 * * * * * 2 0 * * * * * * 2885 0 0 A 3 162 * * * * * * * * * * * * * * 3235 * * * * 3 0 * * * * * * 3764 0 0 R 4 * * * * * * * 1185 4479 4297 4308 * * 4657 3374 * 4309 3238 * 3043 4 0 * * * * * * 3846 0 0 K 5 * * * * * * 3334 * 706 * * * * * 1796 * * * * * 5 0 * * * * * * 4035 0 0 G 6 * * * * * 0 * * * * * * * * * * * * * * 6 46 4998 * 0 * * * 4150 1000 0 A 7 4424 * * 4729 * * * 3536 * 3192 4345 * * * * 3945 4076 968 * 4812 7 0 * * * * * * 4194 0 0 L 8 * * * * 2324 * * 5071 * 448 4742 * * * * * * * * * 8 0 * * * * * * 4194 0 0 V 9 * * * * * * * 1411 * 2411 * * * * * * * 1198 * * 9 0 * * * * * * 4194 0 0 Q 10 * * * 1708 * * 5248 * 2759 * * 5246 * 3230 4027 2759 2491 * * * 10 0 * * * * * * 4189 0 0 C 11 4758 190 * * * * * * * * * * * * * 4361 4729 * * * 11 54 4755 * 0 * * * 4189 1000 0 D 12 * * 47 4958 * * * * * * * * * * * * * * * * 12 0 * * * * * * 4307 0 0 P 13 3165 * * 4450 * * * 3786 * * * * 746 * * 4651 * 2896 * * 13 0 * * * * * * 4307 0 0 S 14 1385 * * * * * * * * * * * 1284 * * 2493 5115 * * * 14 0 * * * * * * 4307 0 0 I 15 4651 4770 * * * * * 1974 * * 1768 * * * * * 2138 2753 * * 15 0 * * * * * * 4307 0 0 K 16 3731 * * * * * * * 554 * 3091 * * * 3465 * 4802 * * * 16 0 * * * * * * 4307 0 0 A 17 3028 * * 2753 * * * * * * * * * 800 * 3520 * 3887 * * 17 0 * * * * * * 4307 0 0 L 18 * * * * 1749 * * 1990 * 2306 5296 * * * * 4408 * 4751 * 2848 18 0 * * * * * * 4307 0 0 I 19 * 4408 * * * * * 869 * 1815 * * * * * * * 3047 * * 19 0 * * * * * * 4307 0 0 L 20 3731 4408 * 4463 * * * 4814 4860 1110 * * * 4897 4751 * * 2131 * * 20 0 * * * * * * 4307 0 0 Q 21 5265 * 5296 * 4814 * 1804 * 4143 3592 4601 3950 * 3682 5205 3444 4408 * * 2867 21 0 * * * * * * 4307 0 0 I 22 * * * * * * * 2057 * 1091 2207 * * * * * * * 4408 5236 22 0 * * * * * * 4307 0 0 D 23 * * 1125 * * * * * * * 4408 1155 * * * 4463 * * * * 23 44 5056 * 0 * * * 4307 1000 0 A 24 3824 * 3851 975 * * * * 4463 * * 3838 * * * 2084 * * * * 24 265 3178 4128 1585 585 * * 4307 1813 0 K 25 3989 * 4318 3818 * 4280 * * 2236 * 4611 * 4319 2762 5007 2701 4046 3873 * * 25 318 2552 5196 1636 560 0 * 4281 2518 1574 M 26 * * 4880 2797 * * 5023 * 3325 4731 3463 2662 * 5759 2712 2346 4733 * * * 26 371 2140 * 1585 585 0 * 4298 2313 1000 S 27 * * * 4601 * * 2079 * 2499 * * 2732 3932 3382 3113 3087 * * * * 27 216 4770 3289 1585 585 * * 4307 1000 0 D 28 * * 2156 3395 3734 4937 * * 1292 * * 5015 * * 2906 * * * * * 28 0 * * * * 0 * 4091 0 1880 I 29 * * * 4463 480 * * 2677 * * * * * * * * * * * 3617 29 0 * * * * * * 4307 0 0 V 30 * * * * * * * 528 * 4450 * * * * * * * 1938 * * 30 0 * * * * * * 4307 0 0 L 31 * * * * * * * 643 * 2615 5337 * * * * * * 2792 * 5205 31 105 * 3835 * * * * 4307 0 0 E 32 4908 * * 1211 * * 4672 * 3708 * 5197 * * 2467 4608 * 3513 4718 * 4504 32 52 4810 * 1000 1000 0 * 4222 1000 1635 E 33 * * 926 2710 * * * * 3647 * * * * 3804 3501 * * 3623 * * 33 0 * * * * * * 4307 0 0 L 34 * * * * * * * 2938 * 269 * * * * * * * 4651 * * 34 0 * * * * * * 4307 0 0 D 35 * * 201 * * 4408 * * * * * 4751 * * * 4450 * * * * 35 70 4408 * 0 * * * 4307 1000 0 D 36 3851 * 1464 1228 * * * * 4408 * * * 5367 * * 4802 4875 * * * 36 0 * * * * * * 4307 0 0 T 37 * * 5236 2771 * * 5498 * * * * 3965 * 4958 3486 4860 839 * * 5265 37 39 5236 * 0 * * * 4307 1000 0 H 38 * * * * * * 760 * * * * * * * 2951 4875 3424 3640 * 3782 38 0 * * * * * * 4307 0 0 L 39 4860 4450 * * * * * 4229 * 886 3731 * * * * * * 2000 * * 39 0 * * * * * * 4307 0 0 L 40 * * * * 1711 * * * * 1053 4651 * * * * * * 2924 * 4601 40 0 * * * * * * 4307 0 0 V 41 * 3091 * * * * * 1625 * 4463 * * * * * * * 963 * * 41 0 * * * * * * 4307 0 0 N 42 * * 3718 4080 * * * 5624 1679 3215 * 3604 * 2197 4751 3523 * * * * 42 67 4463 * 1585 585 * * 4307 1000 0 P 43 2727 * * 1596 * * * * 3886 4897 * * 1397 * * * 4743 * * * 43 0 * * * * * * 4307 0 0 S 44 4267 4751 2769 2292 * 4814 3786 * 3664 * * 3281 * 4601 * 2561 5296 * * 4875 44 0 * * * * * * 4307 0 0 K 45 2790 * 5265 5498 * * * 3386 2987 5624 3262 * * 5236 3180 * * 1980 * 3822 45 0 * * * * * * 4307 0 0 V 46 4601 * * 2747 3804 * * 2904 * 2540 * * * * 4897 4814 * 1653 * 4450 46 0 * * * * * * 4307 0 0 E 47 4601 * 1773 2133 * * * * * 5015 5265 2855 4263 3134 * 5326 * 5056 * 5498 47 0 * * * * * * 4307 0 0 F 48 4806 4408 * 3475 2412 * 5056 5166 4064 4958 2508 5236 * 5115 4377 4463 4743 4446 4480 4770 48 0 * * * * * * 4307 0 0 V 49 * * * * * * * 1714 * 839 * * * * * * * 2877 * * 49 0 * * * * * * 4307 0 0 K 50 * * * 3174 * * 4806 * 1512 * * * * 2520 1765 4860 * * * * 50 0 * * * * * * 4307 0 0 H 51 2061 * 3350 2023 * * 5476 * 3881 * * * * 4058 2301 4802 * * * 5205 51 0 * * * * * * 4307 0 0 E 52 3310 * * 1110 * * * * 2141 5056 * * * * 2480 * * * * * 52 0 * * * * * * 4307 0 0 L 53 * * * * * * * 2038 * 1217 * * * * * * * 1616 * * 53 0 * * * * * * 4307 0 0 N 54 * * 3115 1845 * 3142 * 3647 3887 * * 2669 * 4651 * 4802 3148 * * * 54 0 * * * * * * 4307 0 0 R 55 3345 * 2279 2419 * * * * 2919 4814 * 4651 * 5166 2278 * 5498 4480 * * 55 0 * * * * * * 4307 0 0 L 56 5024 * * 2611 3120 * * * * 1653 5118 * * 4432 2881 * * 4257 3696 4959 56 0 * * * * * * 4270 0 0 L 57 * * * 4675 * * * * * 1198 2272 * 5048 3458 3720 3629 * 4646 * * 57 0 * * * * * * 4210 0 0 S 58 * * 1503 2030 * * * 4305 3150 * * 4379 * 4541 * 3680 3833 * * * 58 0 * * * * * * 4210 0 0 K 59 * * * 1849 * * * * 1761 * * * * 2022 3547 3384 * * * * 59 0 * * * * * * 4018 0 0 N 60 * * * * * * * * 4057 4020 * 187 * * * * * * * * 60 0 * * * * * * 3802 0 0 I 61 3571 * * * * * * 2921 * * * * * 3973 * 2050 1488 3033 * * 61 0 * * * * * * 3648 0 0 Y 62 * * * * 1041 * * * * * * * * * * * * * * 960 62 0 * * * * * * 3581 0 0 N 63 * * * * * * * * * * * 2209 * * * 733 2458 * * * 63 0 * * 0 * * * 3130 0 0 //