HHsearch 1.5 NAME c3d3rA_ FAM FILE c3d3rA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c3d3rA_.a3m DATE Thu Mar 11 04:01:58 2010 LENG 83 match states, 83 columns in multiple alignment FILT 111 out of 160 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.7 EVD 0.4186 0.4822 SEQ >ss_dssp CTTEEETTEECCCEEEEEEETTTTEEEEEETTEEEEEECTTCSSCCCTTCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC >sa_dssp EEEEDDEEDEBDEBDACDCDEEEDCBCBCBEEDEDEDEBEEDEEECDEDDECDCDEDEEEEEEDEEECEECDEEEEEEEEEEE >ss_pred CCCEEECCEEEEEEEEEEEECCCCEEEEEECCEEEEEEEEECCCCCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHCC >ss_conf 96034000465028999995898679999789589989983278888885999981521111599999999999999988509 >Consensus xxxxxxxxCLaIPxkVveixxxxxxAxvdxxGvxrxvxlxLvxexvxvGDyVLVHaGxAixkideeeAxetlxxlxelxxxxe >c3d3rA_ ENLYFQGXCLSIPSQVVAVDNERQSVTVDTLGVRRDVSSHLXTEPLAIGDYVLIHIGFVXNKIDRNDALQSLELYQEIVSKLE >UniRef50_A9F9D4(2-76:81) Hydrogenase expression/formation protein n=3 Tax=Bacteria RepID=A9F9D4_SORC5 E=2e-09 s/c=0.85 id=27% cov=90% --------CLGVPGKILGVmGGDLRLGRVAFGGIVKEICLAYVPE-AEAGDYVIVHAGFAISRIDEASARRTLSYLDELGAARE >UniRef50_C6BUH0(2-76:85) Hydrogenase assembly chaperone hypC/hupF n=4 Tax=Desulfovibrionales RepID=C6BUH0_DESAD E=7e-14 s/c=1.04 id=29% cov=92% --------CLAIPVQIKSIEDQVAKCKVGEGETYLDASLMLLADEVEIGDYLIVHAGFALRKLDPKEAEETLKILRDMVELTE >UniRef50_C7NVH5(2-74:94) Hydrogenase assembly chaperone hypC/hupF n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NVH5_HALUD E=2e-10 s/c=0.92 id=26% cov=89% --------CLGIPGEIIEIDGNE--ARAEFWDVEKTVRIDVVDEAVEVGDHILNHAGFAIRKIPDDEVEETMEIYESFLEGDE >UniRef50_UPI0001C4296B(2-73:73) Ni-Fe hydrogenase maturation protein HypC n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4296B E=6e-10 s/c=0.91 id=29% cov=88% --------CVGVPAKIIELEEER--ALVDVLGSKMYVGIIFVP-NVMIGDFVLLHAGQAMSIIEESFAEESLKEWRDILNAAD >UniRef50_Q2EMV3(6-81:103) Hydrogenase maturation chaperone n=3 Tax=Methanococcales RepID=Q2EMV3_METVO E=1e-15 s/c=1.11 id=32% cov=90% --------CLAIPSKVVEIfeEDGEKYAVAEYKGVKQKAKLAL-LEDVSVGDYVLIHTGYALEKLSEEDAKITLDTWEDLFDALD >UniRef50_Q478N5(2-79:96) Hydrogenase expression/formation protein (HUPF/HYPC) n=1 Tax=Dechloromonas aromatica RCB RepID=Q478N5_DECAR E=1e-09 s/c=0.83 id=21% cov=90% --------CLSIPKRIVEWEGSgenaGEFAWVERDGERERINMMLIGPQP-VGTWVLTSLGLAREVVEDEQRTLIEDALSALAASLE >UniRef50_Q46BF3(2-73:86) Hydrogenase expression/formation protein n=4 Tax=Methanosarcina RepID=Q46BF3_METBF E=6e-09 s/c=0.86 id=30% cov=86% --------CIAIPGKVKSIVNEN-TATIDMGGICRDVNMDLMGgaNESQIGKHFLVHVGYAIAEISEEESEETMHLLRQIA---- >UniRef50_A1VNQ1(2-76:108) Hydrogenase assembly chaperone hypC/hupF n=3 Tax=Proteobacteria RepID=A1VNQ1_POLNA E=2e-11 s/c=0.94 id=26% cov=88% --------CIGIPMQVLSLEPGH--ANCQGRGQARRVRTALVG-SVAAGDWLLVFLDSAQECIDAQRAQEinaTLDLLEAVLQGHE >UniRef50_Q8NKU9(2-74:101) Membrane-bound NiFe hydrogenase n=1 Tax=Acidianus ambivalens RepID=Q8NKU9_ACIAM E=5e-09 s/c=0.85 id=26% cov=89% --------CWAVPAKVVAIDTDV-IAEVDLGGGTIK-RVAIGVDNVKPGDYVMVHAGVIIEKLSKEGVIENLKFIAEEIQRTE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 0 * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 N 2 * * * * * * * * * * * 0 * * * * * * * * 2 0 * * * * * * 1000 0 0 L 3 * * * * * * * * * 0 * * * * * * * * * * 3 0 * * * * * * 1000 0 0 Y 4 * * * * * * * * * * * * * * * * * * * 0 4 0 * * * * * * 1000 0 0 F 5 * * * * 0 * * * * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 Q 6 * * * * * * * * 1580 * * * * 588 * * * * * * 6 0 * * * * * * 1873 0 0 G 7 * * * * * 1613 * * * * * * * * * 1580 1563 * * * 7 0 * * * * * * 1873 0 0 X 8 * * * * * * * * * * 0 * * * * * * * * * 8 0 * * * * * * 1490 0 0 C 9 * 0 * * * * * * * * * * * * * * * * * * 9 0 * * * * * * 5104 0 0 L 10 * * * * 5779 * * 2332 * 692 5272 * * * * * * 3480 4365 * 10 0 * * * * * * 5110 0 0 S 11 982 * * * * 1253 * * * * * * * * * 4305 5401 * * * 11 0 * * * * * * 5110 0 0 I 12 4638 * * * 4530 * * 985 * 3835 5415 * * * * * 5480 1873 * 5472 12 0 * * * * * * 5110 0 0 P 13 5790 * * * * * * * * 6454 * * 93 * * 6483 * 5537 * * 13 0 * * * * * * 5110 0 0 S 14 1895 4729 * * * 1581 6766 7157 5960 4425 2841 * * * * 3488 * 4273 * * 14 0 * * * * * * 5112 0 0 Q 15 * * * 3112 6194 * * * 1655 4652 * * * 2215 2079 * 5512 4666 * * 15 0 * * * * * * 5112 0 0 V 16 * * * * * * * 1331 * 4317 * * * * * * * 856 * * 16 39 6748 5869 1585 585 * * 5112 1000 0 V 17 * * 6713 3891 * * * 2733 3772 2369 * * * 6098 5216 * 3599 1389 * * 17 13 * 6764 * * * 0 5109 0 1458 A 18 2991 * 4990 1199 5396 5523 * * 3353 * * * * 5264 3751 2777 5824 * * * 18 58 5261 6244 0 * 625 1509 5104 1533 1899 V 19 5291 5404 * * 6111 * * 1133 * 3146 4700 * 6327 * 6141 * 4603 2033 5892 * 19 129 3720 6659 961 1040 1000 1000 5086 2948 1523 D 20 4932 6754 2035 1943 5252 5951 5738 * 3583 4445 * 3528 * 5099 4537 4044 * 5344 * 5712 20 164 4974 3722 1585 585 0 * 5092 1503 1617 N 21 5196 * 2169 2972 * 1300 * * 6000 * * 4771 3206 5661 6645 * 5252 * * * 21 267 5294 2799 790 1245 1249 788 5127 1492 2823 E 22 5639 7044 1959 2284 5706 3420 * 5266 6806 4959 * 3476 4660 6392 4214 3505 6277 4881 * * 22 332 4161 2738 1568 593 1969 426 5040 2468 3780 R 23 4119 * 3905 3897 4679 3018 4456 6334 4118 3231 4916 2855 * * 3054 4263 5043 5140 6228 6938 23 311 5048 2613 754 1296 638 1485 4920 1949 4198 Q 24 3653 * 6388 5764 3791 2260 4854 6822 3958 6037 4208 3706 3140 3695 4781 4154 5271 6212 * 4926 24 201 4057 3842 1840 472 682 1409 4885 2196 4251 S 25 4911 6888 5457 * 4056 * 5729 2573 5500 3121 2468 6657 6551 5719 5906 3922 2670 4206 6229 5390 25 36 6888 5956 0 * 181 3084 5041 1000 3653 V 26 424 4690 * * * 3298 * * * 5738 * * * * 5340 6986 * 3989 * * 26 0 * * * * 453 1891 5121 0 2037 T 27 5092 * * 3828 5148 * * 3337 3114 2793 * 5879 * 5052 3044 5440 2835 3035 4067 * 27 25 * 5837 * * 0 * 5113 0 1000 V 28 3126 3190 * 6405 * 6841 * 2753 * 5778 * * * * * * 5361 825 * * 28 9 * 7264 * * 1000 1000 5105 0 1581 D 29 4747 7384 1122 2090 * 4326 * * 6586 * * 4149 * 4359 5415 4546 5019 * * * 29 57 6380 5212 1000 1000 1000 1000 5122 1000 1435 T 30 3445 5659 6273 6538 2423 4378 * 3070 * 3968 4196 * 6418 * 4325 5120 4677 2562 * 3413 30 20 6186 * 0 * 2067 393 5107 1000 2233 L 31 4324 4819 3488 5271 4409 1587 6743 * 4841 4290 4310 4286 6437 5794 3429 3615 * 6853 6621 * 31 60 4616 * 0 * 0 * 5103 1749 2058 G 32 5791 * 4483 5968 * 274 * * * * * 4335 5356 * 6342 6925 * * * * 32 0 * * * * * * 5116 0 0 V 33 4235 6675 * 3508 * 4626 * 2841 * 3960 * 3987 * 4583 4675 4534 4766 1392 * * 33 0 * * * * * * 5116 0 0 R 34 4676 6071 * 3697 * * 5851 4236 2573 4650 * * 4718 4135 2316 3755 2800 3900 * 6611 34 17 6381 * 1000 1000 * * 5116 1000 0 R 35 6605 5746 * 4636 * 4824 * 4892 2749 4749 5065 7408 * 4046 925 5261 6734 5837 * * 35 16 * 6535 * * * * 5116 0 0 D 36 5552 * 3596 1394 * * * 4807 4078 4817 5269 4668 4370 4893 2985 5764 4287 5773 6254 6577 36 13 * 6856 * * 0 * 5108 0 1000 V 37 2773 5325 6774 6032 * * * 2077 * 6351 * * 5910 * 5402 * 6248 995 * * 37 36 * 5361 * * 0 * 5111 0 1000 S 38 * 4088 3560 6299 5578 5404 6729 6720 5175 * 6473 2147 * * 3069 1539 * 4256 * * 38 0 * * * * 1021 979 5090 0 1379 S 39 4665 * * * * * * 2000 * 1258 3353 * * * * 5798 3825 3450 * 6106 39 51 4844 * 0 * 0 * 5111 2029 1000 H 40 2342 * 2526 3928 5227 4135 5546 3538 7206 4025 2684 * * 7001 5093 4391 4648 5387 * * 40 10 7236 * 0 * * * 5116 1000 0 L 41 5403 4332 * * 4738 * * 3627 * 674 5098 5950 * * * 5383 * 5302 5974 3815 41 295 6088 2554 2175 361 * * 5116 1457 0 X 42 5033 * 6627 6224 * 4518 * 3481 6695 2008 4399 * 5568 5112 5553 5176 4627 1443 * * 42 55 * 4741 * * 67 4470 5129 0 3596 T 43 4557 6669 3052 5094 5919 2878 6751 3779 * 2716 * 7253 1855 4953 7122 6417 4610 4800 * * 43 191 4319 3760 1041 960 1306 747 5119 2504 2278 E 44 5383 * 2154 1039 * 5136 6715 * 5231 * * 5156 3697 * 5724 4597 5325 6687 * * 44 451 5049 2070 1581 587 309 2373 5067 2104 3371 P 45 3378 * 2639 2384 * 4385 6526 6448 4965 * * 3400 3171 2959 4782 4360 5668 * 6582 * 45 30 6439 6734 0 * 0 * 5089 1000 3768 L 46 2588 6663 * 6696 5845 * * 3695 * 3354 * * 2726 6355 * 5483 * 1198 * * 46 146 6850 3511 1585 585 0 * 5119 1000 1000 A 47 2956 5947 * 2812 * 5232 4575 * 1764 5208 6480 6242 6591 3802 3772 3255 5847 5596 * * 47 36 6591 6117 1585 585 0 * 5010 1000 3009 I 48 4285 * * 4331 * * * 2457 5555 4641 * * 1973 7036 6236 * 6083 1453 * * 48 19 6267 * 2322 322 0 * 5107 1000 1000 G 49 * * 5018 * * 72 * * * * * 5829 * * * * * * * * 49 0 * * * * * * 5116 0 0 D 50 5388 * 429 4322 * * 6855 * 6071 * * * * 3610 * 5087 4366 * * * 50 0 * * * * * * 5116 0 0 Y 51 * * * * 3268 * 3779 6244 6605 4911 6198 * * 6730 * * * * 1806 1128 51 0 * * * * * * 5116 0 0 V 52 5881 * * * 6071 * * 3798 * 3274 * * * * * * 6734 352 * * 52 0 * * * * * * 5116 0 0 L 53 * * * * * * * 2474 6746 596 3489 * * * * * * 4393 * 6354 53 0 * * * * * * 5116 0 0 I 54 4993 6581 * * * * * 2323 * 3991 * 5568 * * * * 4356 732 * 5403 54 0 * * * * * * 5116 0 0 H 55 5403 * * * 3758 6251 393 * * * * * * 4280 * 4958 6354 * * 4966 55 0 * * * * * * 5116 0 0 I 56 1193 * * * 6884 6320 * 4456 * 3031 5851 4909 6251 * * 4620 4373 2353 * 5294 56 12 6917 * 0 * * * 5116 1000 0 G 57 * * 3862 * * 131 * * 5791 * * * * * * * * * * * 57 19 6251 * 1000 1000 * * 5116 1000 0 F 58 4107 4320 * * 1319 * 5497 4090 * 5203 4872 * * 6582 * 5007 3880 3257 * 2889 58 0 * * * * * * 5116 0 0 V 59 285 * * * * 6914 * 3631 * * * * * * * 6782 * 3620 * * 59 0 * * * * * * 5116 0 0 X 60 6247 * * * 6906 * * 961 * 3027 2722 * * 6519 3134 * 6641 4171 * * 60 0 * * * * * * 5114 0 0 N 61 3383 * * 1472 * 6496 5699 * 5512 * * 4993 * 3097 4365 1904 5184 * * * 61 0 * * * * * * 5116 0 0 K 62 6342 6521 * 6071 * * * 3165 1278 3555 * * * 6487 2875 6828 6129 2454 * * 62 0 * * * * * * 5116 0 0 I 63 * * * * * * * 1207 * 1712 4445 * * * * * 5851 2332 * * 63 0 * * * * * * 5116 0 0 D 64 * * 755 3817 * * * * 5616 * * 4537 6650 6730 * 2436 3863 * * * 64 0 * * * * * * 5116 0 0 R 65 3453 * 4259 1141 6112 6535 * * 3941 5003 * 5919 2938 5511 3988 6012 6948 5902 * 6766 65 0 * * * * * * 5116 0 0 N 66 2680 * 3051 1323 * 6035 * * 3149 * * 5447 * 3584 4224 5200 * 6884 * * 66 0 * * * * * * 5120 0 0 D 67 3675 * 3193 987 6567 4629 6383 * 6314 6596 5224 * * 4589 3707 5187 5610 * * 5091 67 13 * 6755 * * * * 5120 0 0 A 68 376 * * 6481 5351 5402 * 5208 7062 4340 7188 * * * 5959 6068 6853 5709 6568 6660 68 0 * * * * * 0 5111 0 1000 L 69 2662 * 5762 2180 * * 7160 6070 3427 3381 6443 6554 * 2842 2300 6481 5959 * * * 69 0 * * * * * 0 5111 0 1000 Q 70 4106 * 4572 903 * * * 5579 3873 4298 * * * 3928 3044 6371 5955 6651 * * 70 16 6505 * 1585 585 * 0 5111 1000 1000 S 71 4649 5793 * 6209 6116 * * 2327 * 4921 4828 4753 * 5137 5108 2927 1331 6961 7273 6853 71 19 6239 * 0 * 0 * 5111 1000 1000 L 72 6248 * 5101 4047 5079 6298 * 3418 5253 954 4127 * * 5096 5280 6284 5945 5381 4845 5721 72 0 * * * * * * 5081 0 0 E 73 2373 * 2292 2141 * 5513 5401 7239 2819 * * 6570 * 4678 4475 3513 * * * * 73 0 * * * * * * 5081 0 0 L 74 2473 6763 5442 5305 5077 5732 6823 3688 * 1405 4813 6063 * 5924 * 7154 4276 4125 * 3904 74 0 * * * * * * 5052 0 0 Y 75 6689 * * 5810 3080 * * 3745 * 975 4487 * * * 7050 * * 6739 2833 3853 75 0 * * * * * * 5052 0 0 Q 76 2705 * 3595 2187 * 5836 * 7217 2266 * * 4559 * 3737 3011 5849 5147 5315 * * 76 0 * * * * * * 5000 0 0 E 77 3322 * 3789 983 * 4102 6399 * 4647 5709 7112 6840 * 3399 5890 3945 * * * * 77 0 * * * * * * 4943 0 0 I 78 5462 * * 6424 5316 * * 2231 * 1171 2634 * * * * * 6398 3177 * * 78 0 * * * * * * 4933 0 0 V 79 2278 * * 4866 2954 3271 * 3668 5689 1907 4777 * * 5964 * 6264 5999 3860 * 6365 79 0 * * * * * * 4812 0 0 S 80 2322 * 3130 2055 * * 5679 * 3262 5219 5892 4851 5809 3439 3486 5614 5419 * * * 80 0 * * * * * * 4777 0 0 K 81 1675 * 3016 2442 * 3691 * 5913 5575 5484 6225 * * 6282 4673 3108 5716 4590 * * 81 0 * * * * * * 4757 0 0 L 82 5067 * 5022 4213 * * 4014 * * 1282 2790 * * 5030 5078 * 3560 4167 * 3898 82 0 * * * * * * 4632 0 0 E 83 * * 1439 826 * * * * * * * * * 3901 * * * * * * 83 0 * * 0 * * * 4435 0 0 //