HHsearch 1.5 NAME c3a0bL_ FAM FILE c3a0bL_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3a0bL_.a3m DATE Sat Aug 28 18:27:26 2010 LENG 37 match states, 37 columns in multiple alignment FILT 4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.3 EVD 0.4922 2.7504 SEQ >ss_dssp CCCCTTCCCCCCCTTTHHHHHHHHHHHHHHHHHHHHC >sa_dssp EEEEEEEEEEEEEEDDDEECDEEEEDDDEEECDEEEE >ss_pred CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9988775651110347999999999999998554049 >Consensus mxxnpnxqxvelnrtslyxglllifvxavlfsxyffn >c3a0bL_ MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN >UniRef50_P60129(3-38:38) Photosystem II reaction center protein L n=581 Tax=cellular organisms RepID=PSBL_ARATH E=8e-08 s/c=1.62 id=76% cov=100% -QSNPNEQSVELNRTSLYWGLLLIFVLAVLFSNYFFN >UniRef50_B9NDP4(37-72:81) Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NDP4_POPTR E=9e-06 s/c=1.42 id=65% cov=100% -QSNSNEQNVELNHSSLYWGLLLIFVVAVLFSNYFFN >UniRef50_Q3B0C8(6-39:39) Photosystem II reaction center protein L n=32 Tax=cellular organisms RepID=PSBL_SYNS9 E=1e-05 s/c=1.51 id=71% cov=95% ---NPNNLPVELNRTSLYLGLLFVFVTGVLMSSYFFN # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 E 2 * * * 1488 * * * * * * * * * 636 * * * * * * 2 0 * * * * * * 1256 0 0 P 3 * * * * * * * * * * * * 1488 * * 636 * * * * 3 0 * * * * * * 1256 0 0 N 4 * * * * * * * * * * * 0 * * * * * * * * 4 0 * * * * * * 1353 0 0 P 5 * * * * * * * * * * * * 429 * * 1958 * * * * 5 0 * * * * * * 1353 0 0 N 6 * * * * * * * * * * * 0 * * * * * * * * 6 0 * * * * * * 1353 0 0 R 7 * * * 1058 * * * * * * * 1852 * * 2043 * * * * * 7 0 * * * * * * 1353 0 0 Q 8 * * * * * * * * * 1852 * * * 468 * * * * * * 8 0 * * * * * * 1353 0 0 P 9 * * * * * * * * * * * 1958 945 * * 2165 * * * * 9 0 * * * * * * 1353 0 0 V 10 * * * * * * * * * * * * * * * * * 0 * * 10 0 * * * * * * 1353 0 0 E 11 * * * 0 * * * * * * * * * * * * * * * * 11 0 * * * * * * 1353 0 0 L 12 * * * * * * * * * 0 * * * * * * * * * * 12 0 * * * * * * 1353 0 0 N 13 * * * * * * * * * * * 0 * * * * * * * * 13 0 * * * * * * 1353 0 0 R 14 * * * * * * 1958 * * * * * * * 429 * * * * * 14 0 * * * * * * 1353 0 0 T 15 * * * * * * * * * * * * * * * 1958 429 * * * 15 0 * * * * * * 1353 0 0 S 16 * * * * * * * * * * * * * * * 0 * * * * 16 0 * * * * * * 1353 0 0 L 17 * * * * * * * * * 0 * * * * * * * * * * 17 0 * * * * * * 1353 0 0 Y 18 * * * * * * * * * * * * * * * * * * * 0 18 0 * * * * * * 1353 0 0 L 19 * * * * * * * * * 945 * * * * * * * * 1058 * 19 0 * * * * * * 1353 0 0 G 20 * * * * * 0 * * * * * * * * * * * * * * 20 0 * * * * * * 1353 0 0 L 21 * * * * * * * * * 0 * * * * * * * * * * 21 0 * * * * * * 1353 0 0 L 22 * * * * * * * * * 0 * * * * * * * * * * 22 0 * * * * * * 1353 0 0 L 23 * * * * 1852 * * * * 468 * * * * * * * * * * 23 0 * * * * * * 1353 0 0 I 24 * * * * * * * 468 * * * * * * * * * 1852 * * 24 0 * * * * * * 1353 0 0 L 25 * * * * 401 * * * * 2043 * * * * * * * * * * 25 0 * * * * * * 1353 0 0 V 26 * * * * * * * * * * * * * * * * * 0 * * 26 0 * * * * * * 1353 0 0 L 27 * * * * * * * * * 1103 * * * * * * 1852 1958 * * 27 0 * * * * * * 1353 0 0 A 28 468 * * * * 1852 * * * * * * * * * * * * * * 28 0 * * * * * * 1353 0 0 L 29 * * * * * * * * * 2043 * * * * * * * 401 * * 29 0 * * * * * * 1353 0 0 L 30 * * * * * * * * * 0 * * * * * * * * * * 30 0 * * * * * * 1353 0 0 F 31 * * * * 468 * * * * * 1852 * * * * * * * * * 31 0 * * * * * * 1353 0 0 S 32 * * * * * * * * * * * * * * * 0 * * * * 32 0 * * * * * * 1353 0 0 S 33 * * * * * * * * * * * 1058 * * * 945 * * * * 33 0 * * * * * * 1353 0 0 Y 34 * * * * * * * * * * * * * * * * * * * 0 34 0 * * * * * * 1353 0 0 F 35 * * * * 0 * * * * * * * * * * * * * * * 35 0 * * * * * * 1353 0 0 F 36 * * * * 0 * * * * * * * * * * * * * * * 36 0 * * * * * * 1353 0 0 N 37 * * * * * * * * * * * 0 * * * * * * * * 37 0 * * 0 * * * 1353 0 0 //