HHsearch 1.5 NAME c2zkrq_ FAM FILE c2zkrq_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2zkrq_.a3m DATE Tue Mar 9 13:09:32 2010 LENG 96 match states, 96 columns in multiple alignment FILT 53 out of 57 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4259 0.1948 SEQ >ss_dssp CCSSSTTCHHHHSCCTTTCSCCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECCSSCCSCEEEEECGGGEEEC >sa_dssp EEEDEDEBEEDDECDEEDECEBEEDCDEDEBEDDCDADADBBCCCEECCBDBECCEDDBDADEDDEEBBADAACBECEECEEDCEBDACBBAADEE >ss_pred CCCCCCCCHHHHCCCHHCCCCCCHHHEEEEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEEECC >ss_conf 987555642632464010488761002335412888999956520148506521353278983118779999960578842337998787545049 >Consensus SxGxRxxTRxxfxkxxRxxGxxxxsxxlxxykxGDxVdIxidxsvxkGmPhxxyhGkTGxVxxvxxrAxxVxvxkxvxxrxxxKxixvrxEHikxS >c2zkrq_ TKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHS >UniRef50_B3T3V3(4-94:96) Putative ribosomal protein L21e n=2 Tax=prokaryotic environmental samples RepID=B3T3V3_9ZZZZ E=4e-15 s/c=0.90 id=34% cov=96% SHGTRQGTRSILRRSKTQRGRINIARVMHQYEIGDRVAVVLDGAQQKGMPHRRFQGATGII-QAQQGRAWVI---DLHDKNMAKTVVARAEHLRP- >UniRef50_Q9AW28(4-98:156) 60S ribosomal protein L21 n=1 Tax=Guillardia theta RepID=Q9AW28_GUITH E=3e-18 s/c=0.98 id=34% cov=100% SKGKKSNTRYILTKSKKLTGIKS-NIIINNVSIGDLVDIVIDPSFQSTMPFKFYHGKTGEVFSLNSNSLGIKIQKIVGNRKVCKKINIGLEHLRIS >UniRef50_A8MBN7(5-97:119) Ribosomal protein L21e n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBN7_CALMQ E=9e-17 s/c=0.94 id=29% cov=96% THGYRFKSRKLLSKTPREKGRPGLFKWLlaRYYRVGDKLAIDIDPVYVSTAPHKRYQGRVGTLIGWRGRALVLEVNFMGERRI----IITTPEHVKP- >UniRef50_A4YCT6(5-94:99) 50S ribosomal protein L21e n=12 Tax=Archaea RepID=RL21_METS5 E=2e-13 s/c=0.86 id=34% cov=94% SRGNRTRSRKLLKKSPRERGAVPsLGRLMLDLKEGERVVIKINSSTHSGMPHRRYQGKVGTILGKRGKSYEVKVKLGDKEKIL----IVRPEHL--- >UniRef50_Q0W2E9(4-94:99) 50S ribosomal protein L21e n=20 Tax=Archaea RepID=RL21_UNCMA E=2e-18 s/c=1.03 id=27% cov=96% SHGERLKTRHKFNKDLRARGLSPVSKAVQEFEVGQKVHIDIDPSVHKGMPYRRFQGLTGEILGQAGRAWFVGISDGGK----KKTVIARSQHLKP- >UniRef50_B0R509(4-93:99) 50S ribosomal protein L21e n=7 Tax=Euryarchaeota RepID=RL21_HALS3 E=3e-15 s/c=0.92 id=23% cov=95% SNGPLSNSGGKLQNDPRDRGTSPPQRAIADYDDGESVHLTLDPSVQDGRFHPRFSGLTGTVVGTQGDAFKVEVNDGG----MDKTLIVGAAHLR-- >UniRef50_D2EFU5(6-95:97) Ribosomal protein L21e n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFU5_9EURY E=4e-11 s/c=0.77 id=25% cov=95% -NGLHRRSRKRLKLDIKERGKVNIKKALQSFEVGDKVIIDPDSRIQRNLPQRSFFGSVGKIIEKKGKAYTVEVKQQGK---SLKRIDLLPVHIK-- >UniRef50_A9A3L8(10-96:99) Ribosomal protein L21e n=4 Tax=Thaumarchaeota RepID=A9A3L8_NITMS E=4e-10 s/c=0.76 id=31% cov=92% SHGFKHKSRSVM----KKDAPRGVSFLLREYKEGQQALVIIDPRQHKGLPHRRYHGKVGMITNVGRRAVTLDVKLGNKS----KTLITRLDHIKP- >UniRef50_A0D906(4-99:158) Chromosome undetermined scaffold_41, whole genome shotgun sequence n=9 Tax=Oligohymenophorea RepID=A0D906_PARTE E=4e-21 s/c=1.06 id=38% cov=101% SYGLKKGTRSKFAKPFRGHGNISIRKTLQTFKRGDFVDILVDGAQHKGVPFQYYHGRTARVFNVNPRGIGVSLQRRVRGRYVEKRSHVRADHLRPS # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * 292 2450 * * * 1 0 * * * * * * 4000 0 0 K 2 * * * 5325 3735 5575 1484 * 2605 * * 2634 * 5399 3173 * * * * 4026 2 0 * * * * * * 4089 0 0 G 3 * * * 4531 * 99 * * * * * * * * * 5427 * * * * 3 0 * * * * * * 4091 0 0 K 4 * * * 3855 3302 * * * 2565 2880 * 5540 3276 * 5636 * 3990 4602 * 1859 4 0 * * * * * * 4091 0 0 R 5 * * * * * * 4759 * 3235 4827 * 5636 * * 399 * 4531 * * * 5 0 * * * * * * 4091 0 0 R 6 2942 5413 * * 4376 * 3442 * 4378 5527 * * * 3595 2181 1876 4752 * * 5399 6 0 * * * * * * 4091 0 0 G 7 5344 5392 * * * 1416 * * 2042 * * 3289 * * 2110 * * * * * 7 0 * * * * * * 4091 0 0 T 8 * * * * * * * * * * * * * * * 1624 566 * * * 8 0 * * * * * * 4091 0 0 R 9 * * * * * 4262 * * * * * * * * 77 * * * * * 9 0 * * * * * * 4091 0 0 Y 10 5894 * 4295 * * 4096 3633 * 2905 * * 4899 * 5813 3154 2523 5686 * * 1724 10 0 * * * * * * 4091 0 0 M 11 5413 5429 * * * * * 3719 1612 1689 2940 * * * 4768 * 4664 4890 * * 11 0 * * * * * * 4095 0 0 F 12 * * * * 893 * * * * 1320 4038 * * * * * * * * * 12 49 * 4890 * * * * 4095 0 0 S 13 2231 * * * * * * * 2856 * * 5533 * 3920 3635 1638 2649 * * * 13 0 * * * * * 0 4100 0 1000 R 14 * * * * * * * * 1062 4735 * 3942 * 3596 1575 * * * * * 14 0 * * * * * 0 4154 0 1000 P 15 3370 * 2860 5036 * 4323 5503 * 2657 * * * 2170 5938 * 2694 3602 5101 * * 15 0 * * * * * 0 4218 0 1000 F 16 4904 * * * 1114 * 5887 3949 3826 4597 * * 2533 5693 * * * 4287 * 3882 16 0 * * * * 0 * 4218 0 1000 R 17 * * * 4969 * 5908 * * 2685 * * * * * 470 * 3755 * * * 17 41 5169 * 0 * * * 4283 1000 0 K 18 4743 * 4371 2006 * 4702 6454 * 1409 5324 * 4407 * 3903 4612 5161 5010 * * * 18 46 * 5003 * * * * 4271 0 0 H 19 * * 3782 * * 5313 1513 * 3029 * * 6050 * * 1425 5920 5301 * * * 19 0 * * * * * 0 4243 0 1000 G 20 4954 * * * * 135 * * 4960 * * * * * 5313 * * * * * 20 22 * 6017 * * * 0 4243 0 1000 V 21 3865 * * 5742 5538 * * 4523 4824 3294 4312 4117 3099 5939 3205 4171 3575 2433 * 4782 21 0 * * * * 832 1190 4240 0 1476 V 22 4723 5752 * 5920 * * * 2519 5301 4414 * 4706 2277 5754 4954 2498 * 2266 * * 22 0 * * * * * 0 4243 0 1000 P 23 5497 * * * * 3109 3372 * 5167 7112 6354 2924 1435 5966 * 2941 4715 4960 * * 23 88 4875 5301 0 * 0 * 4243 1141 1000 L 24 4966 * * * * * * 2144 * 1408 6329 5110 3561 * * 5075 3492 3058 * * 24 0 * * * * 0 * 4229 0 1000 A 25 3392 * * * 5131 4310 * * 4274 * * 4180 5161 4022 5627 1207 2855 4722 * * 25 0 * * * * * * 4271 0 0 T 26 * * * * 4319 * * 4484 2263 * * 5316 * 5900 1681 6457 1711 5247 * * 26 0 * * * * * * 4393 0 0 Y 27 2619 * 4894 * 3512 5051 * 4146 5316 3404 5982 * * * * * 4086 4507 5098 1467 27 0 * * * * * * 4393 0 0 M 28 * * * * 5900 * * 2706 * 945 1985 5735 * * * * * 4674 * * 28 43 5098 * 1000 1000 * * 4393 1000 0 R 29 4097 * * 4809 * * 4071 7025 4244 4892 * 5299 * 1820 1657 5051 4416 5126 * 5582 29 0 * * * * * * 4393 0 0 I 30 * * 3955 2420 * * * 3936 3854 * * 3007 5110 3974 * 4304 2984 2389 * 5098 30 0 * * * * * * 4393 0 0 Y 31 * * * * 1347 * * 4435 * 4306 * * * * * * * 3790 * 1192 31 0 * * * * * * 4393 0 0 K 32 5051 * 5205 1921 * * 5856 * 1391 * * 4840 * * 2322 5299 5659 * * * 32 0 * * * * * * 4393 0 0 K 33 * * 5205 2570 * * * 1996 3343 3836 * * 4207 * 4386 5856 * 2017 * 5722 33 0 * * * * * * 4393 0 0 G 34 * * * * * 101 * * * * * * * * * * 4894 4868 * * 34 0 * * * * * * 4393 0 0 D 35 * * 523 2819 * 4894 * * * * * * * 2958 * * * * * * 35 0 * * * * * * 4393 0 0 I 36 * * * * 4733 * 6802 2961 2441 3514 4750 * * 4944 3240 5205 3466 4868 * 2147 36 0 * * * * * * 4393 0 0 V 37 4944 * * * * * * * * 5098 * * * * * * * 92 * * 37 49 * 4894 * * * * 4393 0 0 D 38 3089 * 1015 * * * 2414 4860 * 4955 * 5228 * * * * 4276 4184 * * 38 0 * * * * 0 * 4238 0 1000 I 39 * * * * 4894 * * 464 * 4119 * * * * * * * 2444 * * 39 0 * * * * * * 4393 0 0 K 40 4894 5929 2407 * 5900 * 5985 4944 1375 4259 * 6069 * * * * 4259 2384 * * 40 0 * * * * * * 4393 0 0 G 41 3684 4859 * * * 2416 * 1488 * 3814 * * 4883 * * * * 2066 * * 41 0 * * * * * * 4393 0 0 M 42 * * 1067 4001 * * * 3660 * * 3746 1748 * * * * 6848 * * * 42 0 * * * * * * 4393 0 0 G 43 6196 * 3660 * * 1851 * * * * * * 1208 * * 2342 * * * * 43 0 * * * * * * 4393 0 0 T 44 1722 * * * 5844 5122 * 4458 * * * 5826 * * 3913 1383 3202 5098 * * 44 0 * * * * * * 4393 0 0 V 45 * * * 4841 3645 * * 2340 5982 5697 5902 * * 2974 * * 5884 1231 * 3926 45 0 * * * * * * 4393 0 0 Q 46 * * * * * * 1276 * * * 4943 * 5038 1188 6005 * * 3842 * * 46 0 * * * * * * 4393 0 0 K 47 4910 * 5205 6005 * * 6010 * 620 5982 * 5038 * 5703 4274 3006 * 5929 * * 47 11 * 7025 * * * * 4393 0 0 G 48 * * * 4739 * 228 * * * * * 4874 * * * * 3744 * * * 48 0 * * * * * 0 4277 0 1000 M 49 4317 4866 * * * * * 3968 * 3616 730 * * 5315 4115 3956 * 5645 * * 49 0 * * * * * 0 4389 0 1000 P 50 * * * * 3452 * * * * * * * 244 * * 4459 * * * 5719 50 0 * * * * * 0 4389 0 1000 H 51 3956 * 5810 * 2860 * 925 * 4866 * * 4649 * 4895 * * * * * 2781 51 131 5719 3880 0 * * 0 4389 1000 1000 K 52 5482 * * * * 4432 4107 * 1407 6228 * 5732 2938 5530 1765 5833 * * * * 52 0 * * * * * 0 4154 0 1724 C 53 4945 5568 * * 2899 * 4391 5848 5482 * * 6307 * * 1417 4352 * 3198 * 2474 53 0 * * * * * 0 4154 0 1724 Y 54 * * * * 1425 * * * * * * * * * * * 4432 * * 783 54 0 * * * * * 0 4154 0 1724 H 55 4432 5949 4990 * 4756 * 966 * * * * 5597 * 1722 * 4902 * * * * 55 0 * * * * * 0 4154 0 1724 G 56 4432 * * * * 68 * * * * * * * * * * * * * * 56 0 * * * * 1251 786 4154 0 1724 K 57 3946 * * * * * * * 1231 4395 * * * 5008 1473 4789 * * * 4878 57 13 * 6757 * * * 0 4320 0 1534 T 58 4771 * * * * * * * * 4401 * * * * * * 396 2677 * * 58 0 * * * * * 0 4324 0 1605 G 59 5595 5629 * * * 167 * * * * * * * 4985 4771 * * * * * 59 70 * 4401 * * * 0 4324 0 1605 R 60 * * * 3631 * * * 2744 2438 * 4824 * * * 1928 * 2836 2764 * * 60 0 * * * * 1448 658 4225 0 1712 V 61 * 5672 * * * * * 1791 * 5017 * * * * * 4985 * 669 * * 61 39 * 5229 * * * 0 4324 0 1605 Y 62 * * 4346 4759 1982 * * 3050 * 3133 * * * 5397 * * 3664 3621 2768 3392 62 0 * * * * 1293 756 4292 0 1862 N 63 4788 * 4074 4798 * 1852 5640 * * * * 1381 * 3683 4359 4465 6002 * * * 63 0 * * * * * 0 4331 0 1605 V 64 5233 4941 * * * * * 3389 2602 4514 * * 4815 4254 5741 * 3779 1231 4990 * 64 0 * * * * * 0 4331 0 1605 T 65 4919 * 5741 * 4812 3868 * * 3674 4359 * 3082 * 2825 2632 4758 2401 4728 * 4941 65 0 * * * * * 0 4331 0 1605 Q 66 * * * * * 1486 * * 2888 * * 3720 2318 3053 3569 5226 * * * * 66 0 * * * * * 0 4331 0 1605 H 67 * * 3124 * * 5233 3669 * 3409 * * 4504 * 4941 1054 3765 5913 * * 4728 67 27 5741 * 0 * * 0 4331 1000 1605 A 68 449 4815 * * * 4109 * * * * * * * * 5233 2765 * * * * 68 0 * * * * * 0 4331 0 1605 V 69 5233 * * * 3670 * * 3504 * 2618 * * * * * * * 1403 4663 2145 69 0 * * * * 1476 643 4331 0 1605 G 70 4439 4843 4872 5854 5671 1106 * 4500 3435 3905 * 5878 * * * * 3899 3842 5259 * 70 68 * 4439 * * * 0 4386 0 1310 I 71 * * * * * * * 2426 * 2998 * * * * * * * 538 * * 71 101 * 3882 * * * 0 4294 0 1531 I 72 4142 * 4142 1734 * 5395 * 2119 3896 4514 5845 * * 5526 5775 3916 4774 4036 * * 72 100 * 3903 * * 2856 214 4244 0 2441 V 73 * * * * 5710 4804 * 1945 * 2776 5159 * * * * * 3984 1158 * * 73 0 * * * * 2358 313 4131 0 2746 N 74 4736 * * * 5694 * 3992 * 2843 * * 1224 * 3830 * 4612 3635 * * 3046 74 79 * 4227 * * * 0 4217 0 2449 K 75 * * 2969 * 4759 * * 5270 1026 3750 * * * 3686 2586 * * * * * 75 53 * 4790 * * 1019 981 4155 0 2504 Q 76 * 5460 4881 * * 2346 * 4428 4601 5715 4442 * 4195 2149 1933 * 5715 4926 * * 76 89 6677 4326 4322 74 2151 368 4248 1000 2406 V 77 * * 4128 4764 * 2787 * 3944 * 4914 * 3961 * * * * * 786 5737 * 77 45 * 5027 * * * 0 4225 0 2493 K 78 * * * 3840 * 2057 4844 * 1739 * * 3058 * * 2574 4585 5287 * * * 78 201 * 2942 * * 306 2389 4184 0 2740 G 79 * * 2618 5514 * 1870 3562 4567 5299 * * 2042 * * 4864 3705 4814 * * * 79 55 * 4737 * * * 0 4218 0 2411 K 80 * * 4484 * * 3790 5507 * 2310 * * * * 4332 969 * 3338 * * * 80 0 * * * * * 0 4149 0 2599 I 81 * * 4332 * 5450 3794 * 1428 3825 5818 4596 2832 * 4873 * 4484 5846 4926 * 3566 81 57 * 4691 * * 1591 582 4149 0 2599 L 82 4836 * * * * * * 1867 4805 1887 3233 * * * * 2403 * 3484 * * 82 35 * 5372 * * 691 1394 4249 0 2324 A 83 3193 3659 5066 2893 * 6717 * 5760 4086 3693 * 4804 3472 4184 3354 * 4708 2713 * 6224 83 0 * * * * 1593 581 4287 0 1848 K 84 * * * * * * * * 208 * * * * * 3796 4769 5286 * * * 84 55 * 4734 * * * 0 4347 0 1504 R 85 * * * 2999 * * 5512 * 2925 * 4682 * * * 1393 * 2009 5966 * 4754 85 38 * 5251 * * 1536 610 4303 0 1971 I 86 * * * * 4189 * * 1175 * 2442 4842 4194 * * * 5525 * 2271 * * 86 0 * * * * 1562 596 4331 0 1861 N 87 * 4771 4858 * 4370 * 2402 1699 * * * 2426 * * * 4118 * 4404 * 3434 87 0 * * * * * 0 4340 0 1609 V 88 2755 * * * * * * 3022 * 4208 * * * * * 5533 3934 767 * * 88 0 * * * * 1216 812 4340 0 1609 R 89 * * * * * 4162 5726 * 5835 3511 * 5855 * * 624 4272 3941 * 4752 * 89 0 * * * * 0 * 4392 0 1000 I 90 2995 * * * 4939 * * 1661 * 3747 4337 * 2047 * * 4607 5654 3336 * * 90 0 * * * * * * 4399 0 0 E 91 3695 * 3490 544 * * * * * * * * * 4027 * * * 3527 * * 91 0 * * * * * * 4399 0 0 H 92 * * * * * * 0 * * * * * * * * * * * * * 92 0 * * * * * * 4399 0 0 I 93 * * * * * * * 2296 * 1417 4977 * * * * * 4337 1554 * * 93 0 * * * * * * 4399 0 0 K 94 * * * 4310 5599 * 5755 * 1194 * * * * 4407 1391 * 5584 5375 * * 94 0 * * * * * * 4393 0 0 H 95 * * * * * * 2264 4970 1943 4716 * * 1330 5630 * 4510 * * * * 95 0 * * * * * * 4142 0 0 S 96 * * * * * * * * * * * * * * * 0 * * * * 96 0 * * 0 * * * 3311 0 0 //