HHsearch 1.5 NAME c2ytmA_ FAM FILE c2ytmA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2ytmA_.a3m DATE Fri Mar 12 16:40:44 2010 LENG 46 match states, 46 columns in multiple alignment FILT 104 out of 12866 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.7 EVD 0.5391 2.8493 SEQ >ss_dssp CCSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC >sa_dssp EEEEEEEEDEDEEDBEEDDEECEEEEDBDEBEEECEDEEEEEEEEE >ss_pred CCCCCCCCCCCCEEECCCCCEECCHHHCCEEEEHHCCCCCCEECCC >ss_conf 9761033788462742487500211421201210178825212586 >Consensus gxHxxxHtxekpyxCxxCxkxFxxxxxLxxHxxxHxgxkpyxCxcG >c2ytmA_ GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG >UniRef50_B0W530(918-962:1039) Zinc finger protein n=1 Tax=Culex quinquefasciatus RepID=B0W530_CULQU E=0.0007 s/c=1.00 id=22% cov=100% -AHLAAHENKRLWKCEQCPLSFNYKAIFDRHQLIHTGEKQYQCRYG >UniRef50_A8QA18(184-229:367) Zinc finger, C2H2 type family protein n=1 Tax=Brugia malayi RepID=A8QA18_BRUMA E=6e-07 s/c=1.21 id=28% cov=100% -AHEKTHTTGRPYQCPICTKCFARQVNFSIHMKLHASGRRYFCSlCG >UniRef50_UPI00006A19D0(228-273:345) UPI00006A19D0 related cluster n=2 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A19D0 E=3e-07 s/c=1.22 id=26% cov=100% -SHQILHAEDRPFQCNQCGRKFSLRSSLSNHERNQSCEQPFRCkECG >UniRef50_Q9VGK1(861-906:936) CG18476 n=14 Tax=Drosophila RepID=Q9VGK1_DROME E=6e-09 s/c=1.35 id=28% cov=100% -RHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPFVCgTCG >UniRef50_B0XFC6(340-387:644) Zinc finger protein 181 n=2 Tax=Culex quinquefasciatus RepID=B0XFC6_CULQU E=1e-05 s/c=1.06 id=23% cov=102% GTHiRRIHLSEKNFECKTCGLKFTSNYMLKTHSETHNVDKSYACqTCG >UniRef50_B0W328(295-336:345) Lethal neo38 n=1 Tax=Culex quinquefasciatus RepID=B0W328_CULQU E=0.0001 s/c=1.13 id=28% cov=87% -----SHAVERRFVCDICHAALKRKDHLTRHKLSHIPDRPHICS-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 4409 0 0 S 2 2100 * 5583 5664 * * * * * 6056 * * * 5989 1691 2311 2611 5605 * * 2 0 * * * * * * 6293 0 0 S 3 * * 6007 * * * 140 * * * * 6015 6234 6546 * 5207 6628 * * * 3 14 6669 * 0 * * * 6523 1000 0 G 4 4935 6244 * 3889 6725 5226 5885 4289 4019 2902 2700 5501 * 2098 4351 * 5467 3757 * 4982 4 0 * * * * * * 6556 0 0 S 5 5380 * 5716 5044 * 6600 6986 4940 2203 4296 6602 3762 6233 4601 1739 3728 4663 4187 * * 5 0 * * * * * * 6564 0 0 S 6 4464 5764 * 5785 6232 5664 6487 2711 5164 4088 5081 5203 * 4598 4608 3027 2012 3000 * * 6 0 * * * * * * 6557 0 0 G 7 * 6077 * * * 6427 214 * * * * * 5229 5555 5440 * * 6470 * 5097 7 12 6954 * 0 * * * 6821 1000 0 T 8 4495 * 5762 5240 5506 5658 5560 4699 4506 4212 6409 4013 5291 6700 5320 2300 1558 4857 * * 8 0 * * * * * * 6820 0 0 G 9 4290 * 4056 3827 5032 1378 * 6119 3141 6315 * 4754 * 4455 3339 4188 5250 * * * 9 0 * * * * * * 6820 0 0 E 10 4658 * 3817 1070 * 5273 6544 6647 3101 5334 6645 5043 6700 5008 4931 4747 6067 4074 * * 10 8 * 7438 * * * * 6820 0 0 K 11 6626 6325 5760 4943 * 5878 * 6571 1121 * 6580 4709 4847 4797 2218 5540 4104 5945 * 6816 11 15 * 6636 * * 0 * 6825 0 1000 P 12 4752 * * 4623 * * 5922 4807 4680 3797 5503 4890 1060 4820 4749 3850 4307 4998 * * 12 37 6875 5877 0 * 0 * 6804 1000 1000 Y 13 * * * * 1621 * 2954 6554 6531 6785 * * 6323 * 6123 5337 * 6675 5557 1209 13 0 * * * * * 0 6808 0 1000 K 14 4643 6142 6144 3043 * * 5529 5573 1865 4452 4190 4990 4434 3431 5010 4889 3312 4140 * * 14 16 6472 * 1585 585 0 * 6808 1000 1000 C 15 * 243 * * 4675 6398 * * * * * 5677 * * * 4628 * * * 4499 15 0 * * * * * * 6829 0 0 M 16 5179 * 3100 3333 5523 4561 5075 6687 3288 6934 5643 3579 3234 4064 5722 2810 3492 6659 6339 * 16 0 * * * * * * 6829 0 0 E 17 5677 6467 3742 1951 5920 * 3386 3158 3777 4849 6251 6681 * 3617 6135 6792 5250 3414 6687 4426 17 14 6680 * 1000 1000 * * 6829 1000 0 C 18 * 174 * * 5545 6335 * * * * * * * * 5882 4580 * * 5564 * 18 0 * * * * * * 6829 0 0 G 19 7168 * 3465 4254 7569 1203 5678 * 6778 6521 * 4385 3702 5412 6019 2959 5316 6507 6220 5093 19 0 * * * * * * 6829 0 0 K 20 5683 * 5564 5177 5978 * 4371 * 1154 5074 5667 6541 * 3951 2547 6778 5873 6258 6419 3806 20 0 * * * * * * 6829 0 0 A 21 2460 4223 6576 6912 * 4030 * 4410 3446 6620 * 6518 * 4458 3216 2225 3080 5202 * 6339 21 0 * * * * * * 6829 0 0 F 22 5669 4201 * * 502 * * * * 4519 * * * * * 4658 4573 * * 3404 22 0 * * * * * * 6829 0 0 G 23 3283 6687 6634 * 4779 4525 5664 4914 3809 4369 4521 3657 4166 6121 4061 2502 2916 6770 * 4212 23 0 * * * * * * 6829 0 0 D 24 * 5971 3613 6603 5723 7019 4211 * 3845 4758 * 5340 * 2483 2959 3035 3031 * 4801 3436 24 0 * * * * * * 6829 0 0 N 25 4298 * 6797 3836 6634 * 5175 5650 2094 3976 4550 4446 3896 5113 2591 2797 6258 7129 * * 25 0 * * * * * * 6829 0 0 S 26 3854 4909 4057 4654 5258 4602 5360 5702 4488 7263 5219 4641 4611 6859 4861 1408 4226 5162 * 5232 26 0 * * * * * * 6829 0 0 S 27 3964 6716 4028 4179 6594 4759 3010 5746 4616 5949 5310 2726 6778 3748 3982 2862 3625 5564 * * 27 0 * * * * * * 6829 0 0 C 28 6687 4977 * * 3492 * 5556 4934 * 604 4111 * * * 5115 6112 * 4627 * 5957 28 0 * * * * * * 6829 0 0 T 29 5776 * 4830 4326 6778 * 5541 4196 3584 4993 5740 3269 5041 3166 2503 3699 3549 3416 * * 29 0 * * * * * * 6829 0 0 Q 30 4241 6379 4918 4092 * 5669 5105 3629 2383 4752 5885 3997 * 3876 2501 4213 4801 4142 * 6135 30 0 * * * * * * 6829 0 0 H 31 * 6440 * * * * 124 * * 6552 * 5564 * * * * * * * 4682 31 10 7159 * 0 * * * 6829 1000 0 Q 32 5270 6339 * 3409 5220 5497 * 4849 4381 2947 2400 6587 4574 2340 4061 5323 6716 3969 * 6842 32 0 * * * * * * 6829 0 0 R 33 6107 6335 5750 5710 5761 5076 6594 4097 2259 3827 5020 5063 6576 4836 1511 5122 5390 5082 * * 33 0 * * * * * * 6829 0 0 L 34 4832 6379 * 6564 6220 6251 5550 2066 4278 3464 4682 6603 * 5115 3617 3889 2674 3068 6593 * 34 11 7051 * 0 * * * 6829 1000 0 H 35 * * * * * * 166 * * 6189 * 6001 5677 5551 5881 * * * * 5517 35 12 6861 * 1000 1000 * * 6832 1000 0 T 36 3595 5407 4622 6196 5947 5099 5369 6482 5120 7116 4400 3641 6363 4428 5827 2697 1577 6638 5679 * 36 28 6679 6746 1000 1000 * * 6832 1000 0 G 37 4102 6592 4567 3822 * 1165 5770 * 3750 5772 * 4161 * * 3978 4108 4299 4904 * * 37 0 * * * * 0 * 6829 0 1000 Q 38 6679 * 3213 1377 * 4013 * 5087 3668 4215 5392 4899 * 4339 4350 5180 4611 4718 * 6466 38 0 * * * * * * 6832 0 0 R 39 5533 7122 6861 5547 6658 5386 6881 * 1170 4464 6770 3815 5290 4839 2157 * 5795 * * 5254 39 0 * * * * * * 6832 0 0 P 40 4364 4600 * * * 6029 4584 5550 5621 5571 6900 5149 801 4303 4637 4590 5068 6746 * 6877 40 23 6003 * 606 1544 * * 6820 1647 0 S 41 6226 6472 * * 1927 * 2698 5208 * 5256 * * 6456 6754 * 5016 * 6402 * 1179 41 55 4752 * 0 * * * 6811 2215 0 G 42 4725 4138 6055 3211 6873 6420 6739 6511 2093 5227 5529 4534 4398 4524 3440 3487 5509 3038 * * 42 0 * * * * * * 6804 0 0 P 43 * 231 6203 * * * * * * * * * 3893 6405 * 6519 5432 * * 5554 43 156 3289 * 0 * * * 6794 2836 0 S 44 4097 * * 1456 * 5796 * 6156 6263 6445 * 3386 5089 4412 5455 2047 3578 * * * 44 509 1749 * 0 * * * 6390 4064 0 S 45 * 695 * * * * * * * * * 2930 * * * 2974 3760 * 5548 5129 45 0 * * * * * * 5760 0 0 G 46 4480 * * * * 66 * * * * * * * * * * * * * * 46 0 * * 0 * * * 5270 0 0 //