HHsearch 1.5 NAME c2ytbA_ FAM FILE c2ytbA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2ytbA_.a3m DATE Fri Mar 12 05:53:48 2010 LENG 42 match states, 42 columns in multiple alignment FILT 135 out of 12119 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.1 EVD 0.5114 2.8207 SEQ >ss_dssp CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC >sa_dssp EEEEEEEEEDEDEAEDDDEECEEDDDCEECCEECEEBEEEEE >ss_pred CCCEECCCCCCEECCCCCCEEECHHHCCEEEEEECCCCCCCC >ss_conf 973054588736716248888013334313210065998898 >Consensus gHxxxHtxekpyxCxxCgkxFxxxsxLxxHxxxHtgekPysx >c2ytbA_ GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG >UniRef50_A7SEP2(333-372:447) Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7SEP2_NEMVE E=3e-05 s/c=1.24 id=29% cov=98% -HMRIHTGEKPFKCTTCDKWFRTASQLRTHSLIHEEEKRFS- >UniRef50_B4JSI7(406-445:513) GH22488 n=1 Tax=Drosophila grimshawi RepID=B4JSI7_DROGR E=6e-05 s/c=1.22 id=27% cov=98% -HKVVHTNERRFECTICGTAIKNSTALKIHLLSHTGLRPYT- >UniRef50_C3XZH5(87-126:210) Putative uncharacterized protein n=2 Tax=Branchiostoma floridae RepID=C3XZH5_BRAFL E=0.0006 s/c=1.13 id=27% cov=98% -HMRNHSGDRPLTCPKCYYRAARKISITRHMRNHSGERPFT- >UniRef50_UPI0000E49646(504-542:969) PREDICTED: similar to mKIAA1703 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E49646 E=0.0004 s/c=1.17 id=30% cov=71% -----------YKCDICEYSCVQWADMKKHKYRHMGFKPF-- >UniRef50_B0WUU9(422-465:568) Zinc finger protein 546 n=1 Tax=Culex quinquefasciatus RepID=B0WUU9_CULQU E=2e-05 s/c=1.14 id=24% cov=100% GHLAVHSSQKRFACEVCNRRFTRLRHMVLHAKTHsaaTSEKPYS- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 4077 0 0 S 2 * * * * * * 108 * * * * * * 6192 6357 4945 * * * 6199 2 0 * * * * * * 6169 0 0 S 3 5793 * * 3395 6499 5984 5580 4587 3139 3772 2451 * 6602 2208 3511 4874 5468 4693 * 5789 3 0 * * * * * * 6184 0 0 G 4 3817 * * 5860 5924 4270 5385 6219 2324 3933 5596 4211 * 4446 1827 4715 4631 4511 * 5930 4 0 * * * * * * 6184 0 0 S 5 5042 5383 * 6107 * 5354 6719 2685 5284 4135 5009 4965 6851 5463 6142 2770 2014 2766 * 6748 5 0 * * * * * * 6222 0 0 S 6 6127 6626 6959 * 7156 * 230 * * * * 6816 6420 6187 5531 6020 6860 * * 5152 6 13 6815 * 3170 170 * * 6410 1000 0 G 7 3286 6816 5992 5941 5500 5082 6736 5672 4542 4135 5807 4318 5744 5014 4869 2617 1537 5896 * * 7 0 * * * * * * 6410 0 0 G 8 5471 * 3762 3596 * 1205 * 6905 4942 5260 * 3683 5797 4093 4080 3906 6170 5892 6756 * 8 0 * * * * * * 6412 0 0 E 9 5553 * 2615 1401 5674 6208 6502 4787 3392 6455 6380 5532 6260 3796 6552 5359 5681 3707 * * 9 0 * * * * * * 6412 0 0 K 10 5530 6617 * 6526 5006 5873 5947 * 1127 6188 5935 4539 * 7175 1740 6084 5737 * 7220 6002 10 9 7296 * 0 * * * 6412 1000 0 P 11 4931 5975 6126 7218 * 7386 5675 5437 3903 4746 6067 4362 1050 5510 4054 3659 4030 6886 * * 11 22 6066 * 0 * * * 6412 1453 0 Y 12 * 6074 * * 1839 6153 2524 * * 5921 * 5838 * * 6492 6348 * * 6179 1163 12 0 * * * * * * 6332 0 0 R 13 4206 7102 * 2679 7270 6659 5265 5133 2076 4993 6142 6544 4404 3448 3596 4187 3832 3807 * * 13 0 * * * * * * 6332 0 0 C 14 * 127 * * 5625 * * * * * * * * * * 5122 * * * 4831 14 0 * * * * * * 6332 0 0 D 15 4629 * 2827 2797 * 5209 4768 7148 4342 6275 * 3949 3202 3836 5242 2684 3427 5958 7082 * 15 0 * * * * * * 6332 0 0 Q 16 6582 * 3942 2277 4413 6521 3827 2773 3420 4917 6088 * * 3155 * * 5437 3386 * 3809 16 24 5909 * 1000 1000 * * 6332 2028 0 C 17 * 143 * * 5934 5200 * * * * * * * * * 4673 * * * 6443 17 0 * * * * * * 6332 0 0 G 18 6097 * 3449 3075 * 1110 5617 * 5748 7092 7089 4521 4644 4866 5405 3940 6246 * 5520 5921 18 0 * * * * * * 6332 0 0 K 19 4729 * 6889 4037 5511 * * * 837 5631 5864 5845 * 5563 3161 5212 6727 5782 * 3860 19 0 * * * * * * 6332 0 0 A 20 2642 4956 7276 5720 * 4840 6216 7100 4022 4784 5538 5853 6320 5158 2944 2041 3051 4338 7335 * 20 0 * * * * * * 6332 0 0 F 21 5921 4892 * * 518 * * 6727 * 3760 * * * * * 6783 4768 * * 3027 21 0 * * * * * * 6332 0 0 S 22 3249 6889 7115 * 5293 6146 4763 5887 3159 4747 4959 3697 4387 5744 2823 2852 3339 4376 * 4873 22 8 7559 * 0 * * * 6332 1000 0 Q 23 5260 5144 4342 4602 5397 6091 4913 6136 6054 4236 * 4682 * 2608 2522 3299 3703 5929 5824 3162 23 0 * * * * * * 6332 0 0 K 24 3412 * 5779 4952 7092 6062 6370 5363 2425 4607 5932 3781 3760 4728 2887 2387 6492 5426 * 6932 24 0 * * * * * * 6332 0 0 G 25 3278 6070 3926 4947 6148 4494 4532 5921 4928 5875 * 4143 * 5219 4297 1438 4309 6385 6659 4641 25 0 * * * * * * 6332 0 0 S 26 4315 4396 4247 4498 5943 4404 2477 6064 6095 5311 6011 3258 * 4753 4736 2239 3680 * * 5443 26 0 * * * * * * 6332 0 0 L 27 * 6307 * * 3283 * 7180 5921 6966 456 5594 * 6348 * 5847 * * 5299 6544 4720 27 0 * * * * * * 6332 0 0 I 28 4367 5815 4671 4783 7515 * 6438 3932 2399 5166 5910 4056 6837 3660 2809 3984 3259 3734 * 6932 28 0 * * * * * * 6332 0 0 V 29 4418 7447 7124 3716 * 5447 4703 3832 3429 4723 5752 3611 * 4011 2161 4218 4414 3595 * 4938 29 0 * * * * * * 6332 0 0 H 30 * 5702 * * * * 83 * * * * 5937 * * * * * * * 5625 30 16 6518 * 0 * * * 6332 1607 0 I 31 6335 * 5773 3375 * 6338 6449 4445 3363 2791 2544 * * 2916 3232 5462 7193 3805 6133 4803 31 0 * * * * * * 6264 0 0 R 32 4585 6338 * * * * 6829 5089 2652 3037 4715 5218 7120 3996 1430 5427 4753 4633 * 5621 32 29 5648 * 0 * * * 6264 2101 0 V 33 5967 6832 * 7243 5594 6144 6398 2341 4174 3804 4312 4171 * 6000 4726 3186 2141 3297 * * 33 30 5611 * 0 * * * 6349 2070 0 H 34 * * * * * * 85 * * * * 6346 * 6384 6054 * * * * 5806 34 16 6540 * 1365 709 * * 6319 1558 0 T 35 3931 * 7307 4753 6973 5276 6277 6828 5874 4706 5623 4881 * 5795 4745 2289 1163 5685 * * 35 0 * * * * * * 6197 0 0 G 36 4226 6434 5154 3689 6692 997 7224 * 3350 6900 * 3857 6047 7195 3874 5061 5932 * * * 36 26 5785 * 0 * * * 6061 1460 0 S 37 5959 * 3461 763 6919 5795 * 5134 4728 5470 * * * 5261 6067 5711 6620 3527 * 4973 37 0 * * * * * * 6037 0 0 G 38 * * * 4457 5602 5808 6660 * 1191 5443 6825 5748 * 4530 1687 6126 5424 * * 5249 38 0 * * * * * * 6036 0 0 P 39 5570 6745 * * * 6410 6970 * 5682 5628 * 4641 451 5851 4465 4178 7025 6255 * * 39 0 * * * * * * 6044 0 0 S 40 * * * 6642 1669 * 3208 * * * * 6974 * * 6375 6443 * * * 900 40 0 * * * * * * 6038 0 0 S 41 * * * 3935 * * * * 5408 * * * * * * 911 1398 * * * 41 0 * * * * * * 5079 0 0 G 42 2551 * * * * 270 * * * * * * * * * * * * * * 42 0 * * 0 * * * 2792 0 0 //