HHsearch 1.5 NAME c2yshA_ FAM FILE c2yshA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2yshA_.a3m DATE Thu Mar 11 15:01:13 2010 LENG 40 match states, 40 columns in multiple alignment FILT 105 out of 569 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.0 EVD 0.4733 2.4879 SEQ >ss_dssp CCCCCSSCCTTCEEEECTTSCEEEECSSSCCEESSSCCCC >sa_dssp EEEDCEEDDEDBDEDEBEEDEECBCBDEDEDECEBEBDEE >ss_pred CCCCCCCCCCCCEEEECCCCCEEEEECCCCCEEECCCCCC >ss_conf 9878778889734999799999999778973321177789 >Consensus xsxxxxxLPxgWexxxxxxGxxYYinhxtxxTxwxxPrxs >c2yshA_ GSSGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSSS >UniRef50_A9V612(601-638:744) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V612_MONBE E=9e-07 s/c=1.43 id=26% cov=95% --NGMPPLPDEWEELIDQETKhRFFANHKTRQTSWTDPRD- >UniRef50_UPI000194DAC3(415-453:845) PREDICTED: itchy homolog E3 ubiquitin protein ligase (mouse) n=2 Tax=Euteleostomi RepID=UPI000194DAC3 E=1e-09 s/c=1.65 id=28% cov=100% GQLNEKPLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRT- >UniRef50_UPI0000E4A4F7(322-357:1040) PREDICTED: similar to MAGI-1 n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A4F7 E=3e-06 s/c=1.47 id=32% cov=92% ----DSELPDGWEKIDDPQYGTYYIDHVNRKTQFNSPSKN >UniRef50_UPI00017B3307(6-41:1245) UPI00017B3307 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B3307 E=3e-05 s/c=1.38 id=32% cov=92% ---GRDSLPGRWSYGVCRDGRVFFIDDDTQTTTWLHPRS- >UniRef50_Q13474(351-386:957) Dystrophin-related protein 2 n=22 Tax=Tetrapoda RepID=DRP2_HUMAN E=3e-05 s/c=1.38 id=32% cov=70% -----------WERAISPNKVPYYINHQAQTTCWDHPK-- >UniRef50_C3XWQ0(473-508:1091) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XWQ0_BRAFL E=2e-06 s/c=1.48 id=32% cov=92% -NQASPKLPPGWEKVTETEGISFYWHIPTGTTQWDPP--- >UniRef50_O22014(293-326:397) Nuclear protein EMA1 n=1 Tax=Crypthecodinium cohnii RepID=O22014_CRYCO E=0.0008 s/c=1.32 id=31% cov=88% --NDNNDLPPGWHVANDEDGDPYYY-HDDGRNQWVRP--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 723 * * * * * * * * * 1343 * * * * 1 0 * * * * * * 3828 0 0 S 2 2555 * 4976 4855 * 5227 * * * * 4856 3324 4978 4146 * 1229 3514 * * * 2 0 * * * * * * 4478 0 0 S 3 3071 * 4873 4333 * 3518 * * * 5520 * 2896 3770 4516 * 1386 5444 5005 * * 3 0 * * * * * * 4732 0 0 G 4 4528 * 3195 * * 1212 6192 5194 6154 * * 3797 * 5872 4931 2228 6346 6237 * * 4 0 * * * * * * 4903 0 0 S 5 3655 6879 3871 3722 5215 5362 5118 * 4464 4014 5926 4393 4832 4926 4562 1949 4188 4166 * 4764 5 0 * * * * * * 5076 0 0 S 6 2841 * 3503 3172 * 3631 5095 * 4325 6182 6761 5186 3385 4546 4964 2650 3198 * * 6367 6 0 * * * * * * 5176 0 0 G 7 3793 * 2902 3095 * 2736 * 6536 4179 5766 * 4384 2218 5390 * 2978 6107 6103 * * 7 0 * * * * * * 5052 0 0 L 8 5554 * * * 6152 * * 6173 * 209 4925 * 6292 * * * * 4651 * * 8 0 * * * * * * 5153 0 0 P 9 * * * 6245 * * * * 6113 6271 * * 87 5789 * * * * * * 9 26 5792 * 0 * * * 5053 1422 0 P 10 4267 * 3118 3389 5489 6340 4878 6029 6167 4646 * 6774 1472 4927 6062 4226 5952 4918 * 3653 10 0 * * * * * * 4956 0 0 G 11 5665 6463 5174 6434 * 523 5093 5490 * 6686 7334 4466 4611 5735 5235 5213 * 6971 * * 11 0 * * * * * * 4955 0 0 W 12 * * * * * * * * * * * * * * * * * * 45 5035 12 0 * * * * * * 4948 0 0 Q 13 5972 7034 4227 888 * * 5663 5441 4277 6682 * 6638 * 3991 3899 3880 4361 5517 * * 13 0 * * * * * * 4948 0 0 S 14 3213 5223 * 1799 6194 * * 4625 2753 6864 4006 * 4658 5368 3853 5437 4688 3895 5697 5419 14 21 * 6082 * * * * 4948 0 0 Y 15 1952 4976 6102 5678 4929 4550 3652 4917 3525 4826 * 6793 * 5100 2595 5568 4106 4226 * 5101 15 0 * * * * 0 * 4939 0 1122 L 16 5793 * 6498 4159 3680 * * 3356 3642 4922 5844 4488 * 3619 3922 4632 2943 2715 6069 3658 16 30 5623 * 539 1681 * * 5123 1583 0 S 17 3552 5381 1240 6032 * * 5441 * * 5701 * 4522 6705 * * 3326 1960 * * * 17 53 5263 6639 0 * * * 5123 1816 0 P 18 3314 * 3625 3246 5924 3938 6687 5359 5070 * * 5350 2130 3345 3534 3794 4892 6083 * 6768 18 128 3558 * 0 * 0 * 5122 2987 1000 Q 19 5689 * 2134 2850 6781 * 4898 6035 4553 * * 2990 5581 3196 6736 3248 3056 * * 5449 19 111 3915 6989 178 3107 * * 5123 2628 0 G 20 * * 6520 * 6009 363 * 6031 4190 * * 4015 * * 6542 * 5579 * * 4942 20 0 * * * * 0 * 5120 0 1000 R 21 5312 * 3921 3870 * 3280 5478 5410 2992 6840 5417 5647 * 3439 1615 5449 5817 4415 * 7076 21 31 5574 * 0 * * * 5123 1641 0 R 22 6434 5647 5793 5556 5750 * * 3514 5226 4976 * * 2819 6165 4155 4185 2641 1876 5889 4374 22 0 * * * * * * 5123 0 0 Y 23 * * * * 2198 * 5581 5427 * * * * * * * * * 5860 * 473 23 0 * * * * * * 5123 0 0 Y 24 * * * * 1933 * * * * * * * * * * * * * * 438 24 0 * * * * * * 5123 0 0 V 25 5691 6434 * * 3512 * 5303 1451 * 4248 * * * * * * * 2490 4102 2311 25 29 6740 6534 0 * * * 5123 1000 0 N 26 * * 1701 * * * 2946 * * * * 890 * * * 5446 * * * * 26 0 * * * * 0 * 5119 0 1000 T 27 4538 * 4988 4748 5537 * 1052 4900 5309 4381 5655 * 4709 6549 5592 4442 3541 5848 * 4690 27 0 * * * * * * 5123 0 0 T 28 3348 6035 5001 3340 6781 * 6697 3938 3589 4099 5793 2641 5077 3951 4541 4976 4693 2891 * 6610 28 0 * * * * * * 5123 0 0 T 29 * * 6534 3759 * * 6165 6980 * 3196 4982 2845 5581 6920 5935 3741 1020 * * * 29 0 * * * * * * 5123 0 0 N 30 * * 6069 4045 * 2445 5133 * 2084 * * 3645 * 2812 1976 * * * * * 30 0 * * * * * * 5123 0 0 E 31 3585 * * 2909 * * 5641 3340 3158 * * * * 4011 3245 4077 2167 3275 * * 31 0 * * * * * * 5123 0 0 T 32 6418 * * * * * * 5155 * * 5647 4589 * 6155 * 2238 608 5925 * * 32 0 * * * * * * 5123 0 0 T 33 6648 * * * * * 3731 6530 * 6545 * * 5793 1347 5710 2909 1642 6737 * * 33 0 * * * * * * 5123 0 0 W 34 * 5099 * * 3480 * * * * 5647 * * * * 5291 5449 * * 571 2840 34 0 * * * * * * 5123 0 0 E 35 6520 * 2463 1575 4695 * 4121 4211 5066 5043 6165 6498 * 5034 5615 5001 3061 5303 * 6728 35 0 * * * * * * 5123 0 0 R 36 * * 1855 * 4326 * 2450 * 3533 5569 * * 3415 5653 2289 4399 7081 * * 6621 36 0 * * * * * * 5123 0 0 P 37 * * * * * * * * * * * * 0 * * * * * * * 37 0 * * * * * * 5123 0 0 S 38 4980 * * 5234 * * * * 3563 4965 * * * 3849 1093 4173 2110 * * * 38 0 * * * * * * 4906 0 0 S 39 2914 * 3103 * * 3546 * * 3308 4102 * 3045 * 4457 * 2024 3964 5092 * * 39 0 * * * * * * 4304 0 0 S 40 3075 * * * * * * * * * * 4119 * * * 505 3072 * * * 40 0 * * 0 * * * 3961 0 0 //