HHsearch 1.5 NAME c2ysaA_ FAM FILE c2ysaA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2ysaA_.a3m DATE Mon Mar 8 16:10:53 2010 LENG 55 match states, 55 columns in multiple alignment FILT 74 out of 78 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.4554 2.3353 SEQ >ss_dssp CCCSSSSCCCTTTCCTTSCGGGCSGGGCSSCCCSSCSCCCSSCSCSSSCCCCCCC >sa_dssp EEEEEEEEDAEEBDEEEBDDEEBEBDEEEEDEEDEEEEEDEEEEDDEEDEEEEEE >ss_pred CCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCEECCCCCCCHHHHHCCCCCC >ss_conf 9684786332117748833201588898631024200267767786831246799 >Consensus gxxpPxxYiCxrCxxxGHxIxxCPtnxdxxxxxxxxikxxTGIPxsfLxxvxxpx >c2ysaA_ GSSGSSGYTCFRCGKPGHYIKNCPTNGDKNFESGPRIKKSTGIPRSFMMEVKDPN >UniRef50_C4Q7X9(154-203:982) Retinoblastoma binding protein, putative n=4 Tax=Schistosoma RepID=C4Q7X9_SCHMA E=1e-14 s/c=1.61 id=43% cov=89% ---PPAAYVCHKCNQPGHWIHNCPGVRDKTgkVMDAKSIKRPTGIPQDFLLEV---- >UniRef50_UPI0000E469F4(141-197:649) PREDICTED: similar to retinoblastoma binding protein 6 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E469F4 E=1e-07 s/c=1.01 id=40% cov=95% ---PPRNYICHKCNKAGHFKHRCPNiNNDDDNKSGYTsrpmmMKSSAGIPRSRMTTLDIP- >UniRef50_D2UYX3(189-238:500) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2UYX3_NAEGR E=2e-15 s/c=1.68 id=43% cov=93% ---PPPNYICHRCKKTGHYIQHCPTNGDARYNI-KTIRIPVGIPKSFLQPIEAP- >UniRef50_C4QXH8(156-207:386) Essential conserved subunit of CPF (Cleavage and polyadenylation factor) n=1 Tax=Pichia pastoris GS115 RepID=C4QXH8_PICPG E=9e-18 s/c=1.75 id=45% cov=96% -DAPPPGYICYRCGAKDHWIKNCPTNNDPNWE-GKRVTRTTGIPKTYLKTVDKE- >UniRef50_C1E7Z5(195-244:252) Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1E7Z5_9CHLO E=2e-14 s/c=1.61 id=46% cov=91% ---PPPGYVCFRCSVPGHWIHQCPTNGDQNLDVV-RMKTAYGIPQNRLEHTED-- >UniRef50_B7XHA5(97-148:234) Putative uncharacterized protein n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XHA5_ENTBH E=4e-09 s/c=1.20 id=37% cov=84% --TPPDSYTCFKCGQKGHYIQHCPNTEDKLHETIIQ-RVPSGVPKEYI------- >UniRef50_B4KLU3(148-187:1291) GI20676 n=2 Tax=Drosophila RepID=B4KLU3_DROMO E=1e-07 s/c=1.44 id=41% cov=75% ----PASYRCNKCKRGGHWIKNC---SFASGKEQFEVKRNTGIPRSF-------- >UniRef50_Q4DHQ8(404-436:608) Putative uncharacterized protein n=2 Tax=Trypanosoma cruzi RepID=Q4DHQ8_TRYCR E=0.0001 s/c=1.44 id=40% cov=55% --TVPRFYVCHRCGEKGnHWVDECPKRDDENF------------------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1854 0 0 S 2 2926 * 925 * * * * * * * * * * * 3253 2078 * * * * 2 0 * * * * * * 2376 0 0 S 3 2998 * * * * * 3310 * * * * 4692 3957 * * 3928 861 4192 * * 3 0 * * * * * * 2508 0 0 G 4 * * * * * 4573 * * * * * * 203 * * * * 3489 * * 4 0 * * * * * * 2557 0 0 S 5 * * * * * 5522 5331 * * * * * 162 * * 4070 * * * * 5 0 * * * * * * 3057 0 0 S 6 2273 * 5078 2739 * * * 6572 5731 * 5966 6362 1413 3755 4402 4394 * 6411 * * 6 0 * * * * * * 3094 0 0 G 7 5239 * 3703 * 4666 1361 5914 * * * * 2059 * * * 2574 4523 * * * 7 0 * * * * * * 3156 0 0 Y 8 * * * * 5218 * * * * * * * * * * * * * * 39 8 0 * * * * * * 3175 0 0 T 9 * * * * 5714 * * 1359 6034 3709 4395 * * * 3417 6120 4144 1799 * * 9 0 * * * * * * 3175 0 0 C 10 * 0 * * * * * * * * * * * * * * * * * * 10 0 * * * * * * 3295 0 0 F 11 * * * * 2705 * 1353 * 4208 5718 * 2917 * * 4153 * * * * 2370 11 0 * * * * * * 3295 0 0 R 12 * * * * * * 5916 4928 2417 4017 3090 4283 * * 961 * * 5709 * * 12 0 * * * * * * 3295 0 0 C 13 * 0 * * * * * * * * * * * * * * * * * * 13 0 * * * * * * 3295 0 0 G 14 * * * * 5004 995 3574 * 3544 * * 2734 * * 4524 3558 * * * 5755 14 0 * * * * * * 3295 0 0 K 15 6077 * * 3270 * 4424 * 4103 1888 * * 6313 * 1537 5936 * 4376 3557 * * 15 0 * * * * * * 3295 0 0 P 16 4680 * * 5963 * 3719 4964 * 1739 5720 * * 1717 * 3063 5198 3894 * * * 16 0 * * * * * * 3296 0 0 G 17 * * 4027 * * 91 * * * * * * * * * * * * * * 17 54 4755 * 0 * * * 3296 1269 0 H 18 * * * * * * 0 * * * * * * * * * * * * * 18 0 * * * * * * 3296 0 0 Y 19 * * * * 2409 * 3220 * * 3869 * 5449 * * * 4994 * * 1153 2921 19 0 * * * * * * 3296 0 0 I 20 * * * * * * * 278 4605 5782 * * * * * * * 3774 * 4550 20 0 * * * * * * 3296 0 0 K 21 * * 5427 * * * 3759 * 1515 * * 6292 * 1598 2937 4432 * * 5945 5900 21 0 * * * * * * 3296 0 0 N 22 4337 * 2279 4566 * * 2707 * 6202 5271 * 1282 * 4564 5491 * * 4883 * * 22 0 * * * * * * 3296 0 0 C 23 * 0 * * * * * * * * * * * * * * * * * * 23 24 * 5913 * * * * 3296 0 0 P 24 * * * * * * 5609 * * 5335 * * 181 * * * 3780 * * * 24 79 4604 6341 4244 78 * 0 3395 1398 1000 T 25 5747 * * 5555 6075 4869 * * 4679 3861 3420 4468 * 5438 5978 3513 999 5539 * 5953 25 88 5329 4863 0 * * 0 3823 1000 1305 N 26 3655 * * * 6142 5832 * 5399 4531 * 5670 951 5645 4450 5081 3550 4696 3924 * * 26 56 * 4718 * * 1710 526 3609 0 1627 G 27 4622 * 2531 4164 * 1564 * 5427 5472 * 6198 2654 * 5845 5043 3308 5300 * * * 27 0 * * * * 2014 410 3640 0 2151 D 28 * * 563 5697 4749 2957 * * 5977 * * 3641 * * * * * * * 4580 28 57 5444 5973 0 * 1667 545 3640 1000 1925 K 29 3908 * 4654 4988 * 4633 * * 1944 * * 5706 1166 6022 6675 4196 5837 * * * 29 0 * * * * 1609 573 3668 0 1851 N 30 3311 * 3658 4283 * 5185 * * 3735 4693 * 2099 * 6017 2389 4771 2918 5736 * * 30 179 4336 3901 2273 334 * 0 3668 1428 1498 F 31 4615 * * * 1657 4660 4514 * * 3887 5398 5112 5728 * * 4227 5793 3896 4974 2004 31 103 * 3864 * * 2595 261 3620 0 2205 E 32 4648 * 1234 2567 * 5384 4697 * 3225 * 4494 3711 * 5776 5015 * 5215 * * * 32 164 * 3220 * * 1973 424 3538 0 2243 S 33 5624 * 4521 3531 3566 3066 * 3279 2996 * 4672 3273 5789 6022 * 3009 5098 3508 * * 33 160 * 3252 * * 418 1990 3560 0 2578 G 34 5775 * * * * 3349 3685 5362 3254 * 3385 4207 3828 2852 3160 4651 5368 3091 * 5341 34 287 5951 2608 1000 1000 426 1968 3663 1000 2226 P 35 * * 5338 * 4139 * * 3997 1155 2901 * * 3548 3689 4662 * * * * 3829 35 92 * 4012 * * 633 1494 3573 0 2520 R 36 * * * 3498 * * * 4957 2568 5066 * 3823 * 4430 1357 4113 3737 4625 * * 36 93 4866 5163 2322 322 1009 991 3540 1000 2165 I 37 4034 * * * 3421 * * 1634 * 4513 3235 * * * * * 2977 2022 * * 37 33 * 5461 * * 0 * 3536 0 2106 K 38 * * * * * * * * 696 * 6301 * 5042 * 1882 4864 5929 5838 * * 38 0 * * * * * 0 3645 0 1000 K 39 6561 * * 5677 * * 5533 6233 2740 4864 * * 2928 5134 1321 3875 4352 3763 * * 39 0 * * * * 0 * 3645 0 1000 S 40 2738 * * * * * 5468 * 4246 * * 4077 1678 * * 2619 2159 5941 * * 40 0 * * * * * * 3671 0 0 T 41 3647 * * * * * * * * * * * * * 5363 3097 530 4414 * 4665 41 0 * * * * * * 3671 0 0 G 42 4650 * * * * 140 * * * 5468 * * * * * 5046 * * * * 42 0 * * * * * * 3671 0 0 I 43 * * * * 4650 * * 247 * 5691 * * * * * 5046 * 3877 * * 43 0 * * * * * * 3671 0 0 P 44 4650 * * * * * * * * * * * 95 * * * 5389 * * * 44 0 * * * * * * 3671 0 0 R 45 3643 * * 4304 * * * * 2082 * 4337 * * 3441 1464 4200 4703 4792 * * 45 0 * * * * * * 3647 0 0 S 46 4435 * 3107 3646 * * * * 6166 * * 4262 * 3964 * 906 3409 * * * 46 22 6077 * 0 * * * 3647 1000 0 F 47 * * * 4001 814 * * * 5543 5266 2630 * * 6264 4260 * * * * 3400 47 24 5916 * 2000 415 * * 3633 1000 0 M 48 * * * * * * * 4408 * 423 2831 * * 4698 * * * * * 5174 48 0 * * * * * * 3662 0 0 M 49 * * * 3339 * * * 5173 1812 4075 3008 * * 3255 3783 * 3212 3062 * * 49 107 3806 * 1000 1000 * * 3645 1506 0 E 50 3142 * 4294 2808 * * 5475 4980 3443 * * 6526 3058 3010 * 5910 2092 4619 * * 50 0 * * * * * * 3621 0 0 V 51 4896 * * 5539 * * * 2338 * 4341 3637 4294 * * * * 2992 1182 * * 51 48 4930 * 1000 1000 * * 3608 1000 0 K 52 5425 * 1690 1368 * * * * 3876 * * * 2993 * * 4137 * * * 5119 52 32 5515 * 0 * * * 3488 1000 0 D 53 4268 * 1200 * * 3281 * 4376 2412 * * 5766 * 3697 5791 * 4054 * * * 53 0 * * * * * * 3368 0 0 P 54 * * 4009 2368 * * * * * * * * 496 * * 4837 * * * * 54 0 * * * * * * 3342 0 0 N 55 * * 1006 * * * * * * * * 1452 * * * 2875 * * * * 55 0 * * 0 * * * 2760 0 0 //