HHsearch 1.5 NAME c2yrtA_ FAM FILE c2yrtA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2yrtA_.a3m DATE Fri Mar 12 17:02:16 2010 LENG 75 match states, 75 columns in multiple alignment FILT 82 out of 86 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4676 2.3862 SEQ >ss_dssp CCCCCCSCCEECCSTTTCCEECTTTCCTTTBCCCSSCEEEETTEEEESSSSCEESSHHHHTTCCCSSCBCCCSCC >sa_dssp EEEEEEEDCEDADBEDCDEEBDDEECDDEDACCADBEDDECEEDCABECCEEDBEDEDDBEEBEBDDDBEBDDEE >ss_pred CCCCCCCCCEEEEECCCCCEECCCCCCCCCCEECCCCCEEECCCCCCCCCCCEECCHHHHHCCCCCCCCCCCCCC >ss_conf 976667641256752788633478898667147697544211100102278720378897228878653677779 >Consensus xxxxsxgxxxxCxnxGCgxxfxxxxnxxxxCxyHpGxPvFHegxKxWsCCxkxxxdFxeFlxixgCtxGxHxxxk >c2yrtA_ GSSGSSGMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEK >UniRef50_B6KPJ9(1-68:196) Rar1 n=4 Tax=Toxoplasma gondii RepID=B6KPJ9_TOXGO E=8e-18 s/c=1.35 id=38% cov=92% -------MQKKCTRPGCGKSYKETENEEGSCVYHAAMPIFHDGVKRWPCCDAEAWDWTDFMAIKGCSFGKHTDVK >UniRef50_Q4QCL9(234-295:296) Putative uncharacterized protein n=2 Tax=Leishmania RepID=Q4QCL9_LEIMA E=2e-15 s/c=1.35 id=39% cov=83% -----------CRNFGCAKEFVVAENTKSSCRYHKEGPVFWDTYKYWKCCpDKKCLEFDDFVKVPGCCEGAHR--- >UniRef50_A9T7A5(165-232:239) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T7A5_PHYPA E=2e-16 s/c=1.28 id=39% cov=83% ----------VCKNQCCGKRFTDEENTSLACHYHRGPISFSDRsteEHKWVCCEASVSSFEELATIPPCTRGKH---- >UniRef50_B8C9F3(137-196:287) Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C9F3_THAPS E=4e-15 s/c=1.38 id=39% cov=79% -----------CVHFGCNNRF-PKGGPYPDCKYHSGPPVFHETAKFWSCCpDKKAYDWEGFQCLPTCQSGP----- >UniRef50_A8QDS7(138-207:262) Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8QDS7_MALGO E=1e-13 s/c=1.11 id=39% cov=81% -----------CRRTGCGyvvpEDIHERDRTKETCKFHKGTPIFHEGSKGYTCCKRRVLHFDDFLQIEPCSTAEH---- >UniRef50_A9URR2(134-208:312) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9URR2_MONBE E=3e-18 s/c=1.24 id=42% cov=83% -----------CTHNACKGSYVDESSNEEDCFHHPGTPVFHEGYKYWSCCpKKKTYEFDEFLDFKGCTVGKHR--- >UniRef50_A0DEC9(993-1065:1390) Chromosome undetermined scaffold_48, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0DEC9_PARTE E=3e-15 s/c=1.14 id=34% cov=91% GEAQYAGSDFICKNWGCGQpyKFDATPNGIKTCKHHPGRYEFgskHGLWpECWTCCGKKW-------EAEGCKLEYHKGV- >UniRef50_D0NGD2(387-446:449) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NGD2_PHYIN E=1e-08 s/c=1.01 id=40% cov=69% -----------CKN--CNETFTNKSNTSLSCSFHPGRFVARkyplEGYQ-WSCCQKRE------LSSRPCKfAGRH---- >UniRef50_A8NGB7(126-165:298) Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NGB7_COPC7 E=0.0002 s/c=1.16 id=37% cov=47% -----------CKRRGCGVTFvsdevnRKGDGEGTVCVYHPLPPLFREGSK------------------------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1506 0 0 S 2 * * * 1143 * * * * * * * * * * * 870 * * * * 2 0 * * * * * * 1506 0 0 S 3 1143 * * * * * * * * * * * * * * 870 * * * * 3 0 * * * * * * 1506 0 0 G 4 * * * * * 406 * * * * * * * 2028 * * * * * * 4 0 * * * * * * 2147 0 0 S 5 * * * * * * * * * * * * * * * 223 * * * 2805 5 0 * * * * * * 2669 0 0 S 6 1743 * * * * * * 2921 * 2905 * * 2841 * * 2880 * 2640 * * 6 0 * * * * * * 2669 0 0 G 7 * * * * * 458 * * * * * * * * * 2981 2782 * * * 7 0 * * * * * * 2788 0 0 M 8 * * * * * * * * 3823 4041 1039 * * * * 3835 1681 * * * 8 0 * * * * * * 3180 0 0 A 9 2236 * 4108 4362 * 4461 * 4258 4120 4493 * * 2579 4223 4202 2277 * * * * 9 168 * 3182 * * * * 3413 0 0 L 10 * * * 6024 4532 * * 3767 4692 1485 3127 * * 3359 * * 3931 2362 * * 10 0 * * * * * 0 3504 0 1516 L 11 4821 * * * 6064 * 5753 2173 2544 2801 * 5567 * 3973 5420 5498 6041 2125 * 5676 11 26 5803 * 0 * 0 * 3677 1000 1516 C 12 * 0 * * * * * * * * * * * * * * * * * * 12 0 * * * * * * 3925 0 0 Y 13 * 6057 * * * * * 5798 1451 6068 * * * 3662 2419 6269 2905 3968 * 3183 13 0 * * * * * * 3925 0 0 N 14 * * * * * * 2716 * * * * 757 * * 1965 * * * * * 14 29 * 5665 * * * * 3925 0 0 R 15 4750 * * * 3689 5724 4774 4677 2393 4840 * 3925 3867 3975 3075 5928 3733 6046 3419 4361 15 0 * * * * * 0 3908 0 1000 G 16 3669 4841 * * * 249 * * * * * * * * * 4909 6381 * * * 16 0 * * * * 0 * 3908 0 1000 C 17 * 0 * * * * * * * * * * * * * * * * * * 17 0 * * * * * * 3970 0 0 G 18 5137 * 4272 5452 * 935 * 5835 3742 5643 * 2988 * 3845 5299 5612 5634 * * * 18 29 5663 * 2000 415 * * 3970 1000 0 Q 19 3429 * 5847 3735 * 4992 * 5157 1562 5597 6268 4285 * 2340 6789 5974 4467 5019 * 4916 19 63 4558 * 1000 1000 * * 3970 1367 0 R 20 3846 * 4399 2654 6422 * 6693 * 2247 4647 6123 * 6268 5575 3520 3828 3062 3701 * 4327 20 25 5835 * 3322 152 * * 3970 1000 0 F 21 * * * * 1008 * 6266 5663 * * * * * * * * * * 5884 1142 21 57 7045 4989 2585 263 * * 3970 1000 0 D 22 5932 * 1882 3720 * 6757 5643 4492 3967 4714 * 4645 * 4463 4390 3720 2333 4228 * * 22 44 5474 6989 1585 585 0 * 3925 1000 1157 P 23 4611 * 2567 2448 * 2598 5315 * 5718 6803 * 4543 1886 * * 5957 6327 4422 * * 23 120 4303 5104 495 1784 * 0 3973 1977 1000 E 24 3346 * 3542 2480 * 4084 * 4670 3333 6683 * 4003 3404 5740 3504 4052 3248 * * * 24 40 5178 * 1835 475 1611 572 3985 1341 1454 T 25 5565 * 2215 1609 * 3798 * 4489 4685 * 6242 4125 4948 4925 * 3379 4767 6422 * * 25 24 * 5914 * * * 0 3982 0 1232 N 26 * * * * * 3785 * * * * * 693 5339 * 4496 2570 4080 6334 * * 26 47 4972 * 0 * 218 2835 3984 1438 1604 S 27 3960 * 2817 3808 * 4382 4490 * 4258 4510 * 2967 3337 5635 5462 3347 2739 5960 * * 27 26 5828 * 2585 263 * 0 3973 1000 1000 D 28 4558 * 2119 2401 5628 5179 * 5537 3166 4768 * 3945 3633 4751 * 3551 5595 * * 4980 28 34 6463 6421 0 * 0 * 3973 1000 1000 D 29 4800 * 2917 1907 * 2595 * * 3884 4308 * 4065 4906 5076 5831 6213 3250 * * 5483 29 34 6337 6500 1000 1000 * 0 3971 1000 1000 A 30 1832 4524 4211 4566 * * * 4835 5151 5430 5568 5827 4814 5040 5099 2030 4586 3784 * * 30 31 5565 * 550 1658 0 * 3967 1412 1526 C 31 * 0 * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 3968 0 0 T 32 6414 6705 * 5078 4540 * 3672 4390 2783 3985 6590 5594 * 5305 2170 3578 3598 3175 5981 * 32 0 * * * * * * 3968 0 0 Y 33 * * * * 2924 * 1711 * * * * * * * * 5589 * * * 884 33 0 * * * * * * 3968 0 0 H 34 * * * * * * 0 * * * * * * * * * * * * * 34 0 * * * * * * 3968 0 0 P 35 4602 * 6089 * * * * * 3675 * * 6785 621 * 5007 2894 4611 * * * 35 0 * * * * * * 3968 0 0 G 36 4558 * * 4493 * 316 * * 4243 5268 * * * 5889 * 6129 * * * * 36 36 * 5323 * * * * 3968 0 0 V 37 2135 * * 4491 6342 3587 6700 * 4853 5563 5982 * 2327 4842 4077 6241 3437 2891 5842 * 37 34 5435 * 1585 585 * 0 3923 1000 1000 P 38 3240 * * * 3641 5435 * 4911 * * * * 444 * * * * * * 5482 38 31 5543 * 1585 585 0 * 3923 1000 1000 V 39 * 5190 4713 5053 5378 * * 1500 * 4736 * * * * 6383 3756 * 1393 * 5486 39 0 * * * * * * 3967 0 0 F 40 5700 * * * 93 * * 5499 * * 5582 * * * * * * * * * 40 89 4070 * 1148 866 * * 3967 1567 0 H 41 * * * 5325 * * 282 * * * * * * 5913 3890 4577 * * 5232 * 41 28 5700 * 2000 415 * * 3967 1000 0 D 42 5499 * 1299 1101 * 4563 * * * * * * * * * 5325 4713 * * * 42 0 * * * * * * 3967 0 0 A 43 2721 6320 * * * 948 * 4868 * 3091 5767 * * * 3792 * 3729 * * * 43 110 4368 5325 2700 241 * * 3967 1467 0 L 44 4971 * * 3891 6492 6409 5776 * 3089 2803 2650 * * 5935 * 3012 4914 4925 3563 2752 44 100 3904 * 0 * * 0 3922 1600 1000 K 45 * * * 3904 * * 4914 * 240 * * * * 5670 4898 * * * * * 45 111 4376 5287 3706 115 0 * 3922 1605 1000 G 46 5313 5503 * 4592 3586 1707 4172 5451 4384 * * * * 6367 5984 2596 5888 * * 2432 46 0 * * * * 827 1196 3950 0 1365 W 47 * * * * * * * * * * * * * * * * * * 92 4023 47 0 * * * * * 0 3966 0 1000 S 48 6567 * * * * 5970 * * 3509 5061 * 6335 4975 5651 5813 1011 2021 5001 * * 48 0 * * * * * 0 3966 0 1000 C 49 * 0 * * * * * * * * * * * * * * * * * * 49 0 * * * * * 0 3966 0 1000 C 50 * 0 * * * * * * * * * * * * * * * * * * 50 210 2886 * 445 1913 * 0 3966 2673 1000 K 51 * 6335 3034 4119 * 3161 * * 1965 * 5983 2876 5518 3204 3202 4352 * * * * 51 115 4278 5323 1291 758 * 0 3966 1681 1000 R 52 3224 * * * * 4486 * 4787 1054 * * * 5040 3664 2580 * * 4212 * * 52 0 * * * * * 0 3922 0 1400 R 53 * * 6433 3863 * * 4565 6452 1749 5762 5633 5541 4373 6355 1575 3648 * 5837 * 6043 53 0 * * * * * 0 3922 0 1400 T 54 3583 4726 * 5645 6544 * * * 5090 * * * * * * 2884 2100 1545 3221 * 54 145 6408 3577 0 * * 0 3919 1000 1400 T 55 * * * * 4957 * 3342 * 4877 2201 5574 5116 * * 5718 2782 2475 5562 5880 2431 55 0 * * * * * 0 3814 0 2366 D 56 * * 715 2006 * * 5531 * * * * 5498 * * * 3543 6356 * * * 56 99 * 3909 * * * 0 3814 0 2366 F 57 * * * * 311 * * * * * * * * * * * * * 2366 * 57 0 * * * * 2705 240 3687 0 2571 S 58 4656 * 1303 2645 * 3809 * * * * * 3815 * * * 2528 3656 * * * 58 0 * * * * 2779 227 3744 0 2362 D 59 3661 * 2503 1205 * 5777 * * * 5048 * 5184 * 3820 * 4483 3066 * * * 59 0 * * * * * 0 3741 0 2338 F 60 * * * * 146 * * * * 4640 * 5019 * * * * * * 5316 * 60 0 * * * * 2281 332 3741 0 2338 L 61 4784 * * 4659 * * * 5045 5717 992 1760 * * 4857 * * * 4556 * * 61 0 * * * * 776 1265 3774 0 2066 S 62 2335 5864 5394 2629 * 5937 5281 * 2225 * * 3242 * 3650 6534 3277 4505 * * * 62 0 * * * * * 0 3906 0 1523 I 63 5334 * * * 6482 * 5281 941 * 3355 * * * 2588 * 3822 6662 4319 * 5451 63 0 * * * * 0 * 3906 0 1523 V 64 4368 * * 2610 * * * 6565 2378 * * * 1243 3864 4555 5540 * 5077 * * 64 0 * * * * * * 3960 0 0 G 65 5097 * * * * 558 * * 5012 * * * 2108 * * * 5129 * * * 65 0 * * * * * * 3960 0 0 C 66 * 0 * * * * * * * * * * * * * * * * * * 66 96 3959 * 0 * * * 3960 1736 0 T 67 2900 4399 * 4958 * 7377 * 5647 2887 5577 * * * 4608 4858 3711 1217 5485 * * 67 50 4865 * 0 * * * 3960 1590 0 K 68 4987 * * 4403 5971 * * 5644 2417 4250 5620 * * 6534 2869 2817 2421 2961 * 5623 68 0 * * * * * * 3963 0 0 G 69 5059 * 5106 5539 * 386 * * 6604 * * 5682 * * * 3004 * * * * 69 0 * * * * * * 3963 0 0 R 70 3881 6687 * 4615 6830 7588 * * 1849 * * * 2904 4335 2027 4351 4936 * 4986 4373 70 0 * * * * * * 3954 0 0 H 71 * * * * * * 0 * * * * * * * * * * * * * 71 0 * * * * * * 3918 0 0 N 72 * 3912 3585 * * * * * 3477 * * 3302 * * 3131 1642 2155 * * * 72 0 * * * * * * 3762 0 0 S 73 3107 5003 2889 * 5397 2303 * * * * * 2615 6424 5528 * 3599 2398 * 5469 * 73 0 * * * * * * 3637 0 0 E 74 4545 * 3685 1559 * * * 5356 * * * * * 3480 * * * 1231 * * 74 0 * * * * * * 3423 0 0 K 75 * * * 3986 * * * * 149 * * * * * 4835 * * * * * 75 0 * * 0 * * * 2928 0 0 //