HHsearch 1.5 NAME c2yrgA_ FAM FILE c2yrgA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2yrgA_.a3m DATE Fri Mar 12 17:35:58 2010 LENG 59 match states, 59 columns in multiple alignment FILT 102 out of 523 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.7 EVD 0.5361 2.9772 SEQ >ss_dssp CCCCSCCCTTSCCSSBCTTTCCBCCEEETTTCSEECHHHHTSTTTTTCCEEECCSSCCC >sa_dssp EEEEEEEEEECEEDDDBEECDCCCDCCAEEDDDDBACEBCECEEBEECECEECEDEEEE >ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEHHCCEEEEEEEEEECCCCCCEEEECCHHCCC >ss_conf 98777667333211315001814242071076699757866051378358854020188 >Consensus gexxsxxxxxxxxxxxCxxHxexlxlfCxxdxxxiCxxCxxxxxHxxHxvxPxxxxxxx >c2yrgA_ GSSGSSGSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFPTSGPSSG >UniRef50_A7MBU2(86-137:477) Zgc:171672 protein n=3 Tax=Danio rerio RepID=A7MBU2_DANRE E=1e-08 s/c=1.17 id=29% cov=88% -ERNRRGATTGSEEELCGLHQRPFQLFCIKDEEPVCVECVT--LHPGHELVPTE----- >UniRef50_D2VQ54(130-174:339) C2 and zinc finger domain-containing protein n=1 Tax=Naegleria gruberi RepID=D2VQ54_NAEGR E=3e-06 s/c=1.18 id=24% cov=78% -----SGAESQSAIHKCPTHNISINSLCKTCKKLMCSACAVSKLHNTHKI--------- >UniRef50_Q7ZWH0(116-170:348) Zgc:56376 n=9 Tax=Clupeocephala RepID=Q7ZWH0_DANRE E=7e-08 s/c=1.06 id=23% cov=88% ----SPIKPKSSKELMCQEHEdEKINIYCVTHQTPTCSMCKVFGQHKDCEVSPLAS---- >UniRef50_B0VZG7(72-120:570) Tripartite motif protein n=1 Tax=Culex quinquefasciatus RepID=B0VZG7_CULQU E=7e-06 s/c=1.06 id=29% cov=81% -EHVNSAPPVAANGANCAKHRdKQLSLFCWTCMECACVTCLYSKTHAKH----------- >UniRef50_Q80VI1(159-208:734) Tripartite motif-containing protein 56 n=2 Tax=Murinae RepID=TRI56_MOUSE E=0.001 s/c=0.89 id=26% cov=78% --------ARERQASQCPQHpGEALCFLCQPCSQLLCKDCRL-GPHIDHPCLPLA----- >UniRef50_C3Z055(88-144:851) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Z055_BRAFL E=1e-06 s/c=0.95 id=27% cov=83% -SSSEETREQPQSGNRCSFHpSEMIKVFCKQCQIPVCDHC-LNEAHDDHHI--------- >UniRef50_UPI000179D126(81-126:368) UPI000179D126 related cluster n=1 Tax=Bos taurus RepID=UPI000179D126 E=6e-05 s/c=1.06 id=24% cov=56% ----------------CGTHKQTKKIFCEADKILLYLVCSQGQTHKTY----------- >UniRef50_A7SPQ3(150-202:754) Predicted protein n=2 Tax=Cnidaria RepID=A7SPQ3_NEMVE E=0.0003 s/c=0.88 id=27% cov=88% GEEGEDQALDKYSLTFCKYHtRNVIKYFCITCDEAICRVCTIL-EHREHQyVYP------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 3764 0 0 S 2 * * 4772 1054 * * * * * 4528 * 4203 4542 2998 * 2625 4215 * * * 2 0 * * * * * * 5406 0 0 S 3 3757 * 4835 3759 * 4299 2594 * * * * 3512 * 3790 3074 1635 * * * * 3 0 * * * * * * 5579 0 0 G 4 4119 * * * 4113 1174 4959 * 4875 4981 * 5025 * 2946 * 4217 3861 4909 * 5203 4 0 * * * * * * 5901 0 0 S 5 3505 * * 3791 * 3631 * * 3875 5205 * 5186 4324 5454 4553 1088 4312 * * * 5 0 * * * * * * 6002 0 0 S 6 3983 5616 4518 2705 * 5304 * * 3685 * * * 3436 2673 4752 2380 3433 5708 * 5251 6 25 5849 * 0 * * * 6185 1000 0 G 7 2770 * 4741 4641 * 2206 * 3331 3773 * 5486 4862 3072 3802 5584 4600 4694 4698 * * 7 0 * * * * * * 6241 0 0 S 8 2273 * 4549 4917 * 4925 4921 4443 3249 5576 * 5785 3205 5575 4603 2622 2965 * * * 8 0 * * * * * * 6298 0 0 P 9 2790 5908 * 3614 * * * 4415 3747 4263 * 6300 1776 2981 * 3373 4164 * * * 9 0 * * * * * * 6272 0 0 E 10 2304 5905 5949 2538 * 4796 * * 3963 5831 * 4881 4413 3399 4529 3156 3639 3981 * * 10 22 * 6068 * * * * 6381 0 0 G 11 3569 * * 3341 * 2828 5872 4247 4716 3740 6183 4640 4296 3495 2781 4362 5275 4424 * 4896 11 0 * * * * * 0 6393 0 1000 Q 12 3432 * 6352 3473 5983 4433 5387 5011 4250 3991 * * 2500 2820 4207 2893 5146 5401 * 6204 12 14 * 6686 * * * 0 6356 0 1000 K 13 3153 6594 4774 2802 6352 5224 5230 * 1849 4320 * 4154 4994 3375 6256 3742 * 4960 * * 13 0 * * * * 1030 970 6351 0 1634 V 14 3508 * 4168 2671 4442 3761 5211 4234 4159 3704 5528 6040 3893 4205 4964 4723 4666 3476 * 6754 14 15 6615 * 0 * 0 * 6347 1000 1000 D 15 3777 * 2421 3678 6020 4385 4315 6112 5322 3487 * 3492 3478 4044 3897 3799 6285 5823 * 6456 15 20 6178 * 2807 222 * * 6238 1000 0 H 16 * 5613 * 5585 4463 * 3261 3139 3054 3643 3381 4826 6166 3878 2763 6283 4094 6469 5234 5298 16 64 4534 * 640 1481 * * 5977 1965 0 C 17 * 34 * * * * * * * * * * * * 5443 * * * * * 17 0 * * * * * * 5953 0 0 A 18 4386 6569 5273 2665 * 4861 6349 4613 3323 5487 4738 4495 2542 4418 4931 3489 3556 5097 * 6388 18 13 6843 * 0 * * * 5953 1000 0 R 19 5033 6707 4696 2546 4614 6245 4595 5290 3177 3713 6450 5455 * 3863 3191 5307 3145 3737 * 5925 19 0 * * * * * * 5953 0 0 H 20 * * * * * * 67 * * * * * 4456 * * * * * * * 20 242 2697 * 113 3734 * * 5953 4168 0 G 21 4590 * 4821 4831 6745 2326 3677 * 2916 5936 6926 3751 5506 2615 2820 4542 * * * * 21 69 4413 * 0 * * * 5953 2936 0 E 22 5384 * 5855 1236 * * 6577 6582 2616 5102 4667 5878 * 2983 3559 6709 * 5670 * 5369 22 25 5855 * 1104 903 * * 5955 1594 0 K 23 4733 5357 3817 3428 5877 6949 * 5005 2965 5049 4586 5657 2386 3436 3855 3634 5177 4751 * * 23 27 5777 * 0 * * * 5955 1590 0 L 24 * 5585 * 5928 3878 6317 * 3247 4193 1029 4853 4853 6713 5212 6917 * * 3335 * 5712 24 9 7339 * 0 * * * 5955 1000 0 L 25 5170 6551 4467 3162 * 5062 5890 6644 2319 3767 5523 3328 * 3697 3985 2937 4546 5964 * 5447 25 37 5307 * 0 * * * 5955 1769 0 L 26 6749 * * * 2661 * 6740 3606 * 1365 3781 * * * * 5094 5282 3781 5002 3043 26 0 * * * * * * 5955 0 0 F 27 * * * * 858 * 5696 * * 3852 6831 6372 * * * * * 5169 4667 1879 27 0 * * * * * * 5955 0 0 C 28 * 37 * * * * * * * * * * * * * 5317 * * * * 28 0 * * * * * * 5955 0 0 Q 29 6251 * 4028 2433 5731 * 4974 5350 3735 2887 4956 5592 6863 2760 3579 4950 4321 4222 5949 6636 29 0 * * * * * * 5955 0 0 E 30 4396 * 2578 2534 * * * 7128 4082 * 6317 3851 5081 3168 6614 3693 2215 5595 * * 30 0 * * * * * * 5955 0 0 D 31 * 1234 1145 4782 * * 4778 * 6117 * * 5479 * * * 6241 * * * * 31 0 * * * * * * 5955 0 0 G 32 5527 5964 3551 3193 * 3177 4632 * 2438 5129 5177 4870 * 2126 3878 4485 * * * * 32 0 * * * * * * 5955 0 0 K 33 5856 4913 * 2722 * 6874 * 4103 3105 4549 3840 5752 * 3546 3345 4234 2841 3457 * 5964 33 0 * * * * * * 5955 0 0 V 34 3601 3220 * * 3790 6446 6781 4429 5006 1821 6077 5746 2182 6457 5758 5362 6883 5423 * 5861 34 0 * * * * * * 5955 0 0 I 35 5594 4796 * * 5928 6799 * 1399 * 1776 4559 * * * * * 4435 2660 * * 35 0 * * * * * * 5955 0 0 C 36 * 99 * * * * * * * * * * * * * * * * * 3912 36 0 * * * * * * 5955 0 0 W 37 3140 5053 6926 4104 6998 4373 5119 5246 6551 3702 5753 6430 3341 4889 3681 3656 4919 2490 4629 5652 37 0 * * * * * * 5955 0 0 L 38 3894 * 3256 3289 4631 6259 4797 5511 4823 3327 4184 5704 6147 3670 5815 3213 4527 3022 * 5606 38 0 * * * * * * 5955 0 0 C 39 * 100 * * 4456 5529 * * * * * * * * * * * * * * 39 139 5732 3770 603 1550 * * 5955 1636 0 E 40 2821 5293 * 7039 4206 6668 * 4503 3660 4136 4309 * 4752 4830 3170 2950 3824 4146 6563 3638 40 37 * 5308 * * 0 * 5867 0 3361 R 41 5183 5495 4309 3507 4991 * * 3213 6014 2498 3927 * * 4384 4306 5121 4164 2824 * 3473 41 202 4933 3355 0 * 0 * 5943 1467 2052 S 42 3464 6843 4610 4060 3521 3988 * 5024 6548 5701 * 4265 * 6213 4844 1541 3684 4150 * 6524 42 161 6370 3416 0 * 306 2387 5895 1000 3554 Q 43 6373 * 4108 2580 * 1802 5768 * 4427 * * 6420 6032 2497 3919 5395 3558 6452 6693 6483 43 25 * 5863 * * 0 * 5935 0 3800 E 44 4492 6748 2683 1602 * 6539 5712 5181 3460 4557 * 5699 5600 3574 4612 5377 4200 5208 * * 44 35 5370 * 1367 708 0 * 5944 2071 1635 H 45 * * * * * * 36 * * * * * * * * * * * * 5354 45 14 6682 * 2322 322 * * 5946 1000 0 R 46 4105 * 5039 4391 * 4240 4786 5764 1922 7111 * 4164 4941 2664 2894 4150 5673 6250 * 6024 46 0 * * * * * * 5941 0 0 G 47 5265 5731 2856 3267 6662 1819 7143 * 4373 5844 * 3171 5299 4815 6390 4815 3165 * * 5937 47 0 * * * * * * 5942 0 0 H 48 * 5333 * * * * 139 * * * * * * * * * * * * 3902 48 0 * * * * * * 5942 0 0 H 49 * * 4063 3325 * 6283 4730 5167 3361 6866 5253 3881 5232 3457 2680 4113 2717 5274 * 4248 49 18 6363 * 0 * * * 5842 1000 0 T 50 * 4357 5588 * 5245 * 5164 2254 * 3423 * * * 5837 * 6115 3244 1249 * 6073 50 0 * * * * * * 5845 0 0 F 51 4144 4579 * 5615 5622 * * 3925 3515 2597 5631 * * 4232 4164 3301 3678 2826 4777 4157 51 0 * * * * * * 5579 0 0 P 52 5308 * * * * * * * * * * * 177 4686 * 4275 * * * * 52 0 * * * * * * 5260 0 0 T 53 3678 * * * * * * 2764 * 1532 * * * * * 4654 2922 1959 * * 53 0 * * * * * * 4718 0 0 S 54 2165 * * 2604 * 4392 * * 3281 * * 4590 * 4124 * 2472 2451 * * * 54 0 * * * * * * 4641 0 0 G 55 * * 3194 1844 * 3453 * * 3312 * * 3241 * 3242 * 2260 * * * * 55 0 * * * * * * 3821 0 0 P 56 1172 * * * * * * * * * * * 2191 * * * * 1569 * * 56 0 * * * * * * 3560 0 0 S 57 1350 * * * * * * * * * * * * * * 1401 * 3152 * 3100 57 0 * * * * * * 3396 0 0 S 58 * * * 2987 * 2815 * * * * * * * 2012 * 1047 * * * * 58 0 * * * * * * 3396 0 0 G 59 * * * * * 0 * * * * * * * * * * * * * * 59 0 * * 0 * * * 2368 0 0 //