HHsearch 1.5 NAME c2ynzB_ FAM FILE c2ynzB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2ynzB_.a3m DATE Wed Jan 9 14:31:30 2013 LENG 109 match states, 109 columns in multiple alignment FILT 118 out of 175 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.7 EVD 0.5459 2.7109 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEEETTTTEEECCBTTBSCCCCCSCCCCCCSTTCCCCCCHHHHHH HHHHHHHHC >sa_dssp EEDEDDEEEEEEDEDDEDDDEDDEEDEEDDDDEDEEEEDDEDEDEEDEEEEEDEDDDECEEEEDECCDDEEDEEDEEEEDEEBEEDEECEDEECEEBEED DEDDEEEEE >ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCEECCCCCEEEEHHHHHH HHHHHHCCC >ss_conf 9542078888754326777510100000012201112221001110000012430331065683781058877717775106502467800023276755 443331149 >Consensus xxxdxxxxxxxxxxnVgxAxxgldxsitnvxxxIxxxxxxixxxxxxixxxxxdalxwxxxxgaxxaxhgxxxxxkitxvaxGxisxxStdAVnGxQLxx xxxxvaxyn >c2ynzB_ QIEDKIEEILSKIYHIENEIARIKKLIYETNQKVDQNTSAIADINTSITNLGTDALSWDDEEGAFSASHGTSGTNKITNVAAGEIASDSTDAVNGSQLYE TNMLISQYN >UniRef50_UPI00016ADD78(375-483:1191) YadA C-terminal domain protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016ADD78 E=5e-05 s/c=0.45 id=28% cov=98% -IQSSLSSAVTNIANLQGNVTNLSTSLSQTNANVTNLSTSLVGTQADVSNLqaaDKRNVKYDGAEGFDKVTLQGANGTTVTNVAAGKLSADSSDAVNGSQ LYATNQQVAQ-- >UniRef50_A9IM93(1278-1383:5035) Surface protein/Bartonella adhesin n=6 Tax=Bartonella RepID=A9IM93_BART1 E=3e-09 s/c=0.59 id=18% cov=97% -VKDNGESEEQEYKNVAAAFEGVGASFTNIKKDITNQINHLQSEDSAVVHYDKK--DEGETDYASITLGGKDKTSTaLRNVADGKIAKDSHDAITGGQIN KIGEDITKY- >UniRef50_Q6G4Z9(1094-1189:1726) Surface protein/Bartonella adhesin n=1 Tax=Bartonella henselae RepID=Q6G4Z9_BARHE E=3e-08 s/c=0.62 id=23% cov=87% -----------KYNDVGSAFNEIDASITDIHNQINSVTS--NSLVKWVDGQNLITIGAQKGGTKISIANSNGSDRTISGVKAAELKENSTEAVNGSQLFT TNQTVSN-- >UniRef50_Q5XWC8(452-557:1420) BrpC (Fragment) n=3 Tax=cellular organisms RepID=Q5XWC8_BARVI E=4e-11 s/c=0.65 id=28% cov=87% ----------TKFYDVGSALKGLNANVKSVNTHLSNV---VNDFSNVFNDFSKDALLWSNKEQAFVAQHQEGEalrDSKITYLLDGDITEDSTDAINGSQ INKISKGVAK-- >UniRef50_B4STY1(1530-1633:1814) Haemagluttinin domain protein n=3 Tax=Stenotrophomonas RepID=B4STY1_STRM5 E=9e-06 s/c=0.50 id=25% cov=82% ----------------GQAQSTLNGALQALDGAVVTTTSRVDKVETQLRSVFQDTPS-VRADGVNQLTLAGANGMVISNVANGLIAAGSRDAVNGGQLHS MQQQL---- >UniRef50_A9IM93(4610-4717:5035) Surface protein/Bartonella adhesin n=6 Tax=Bartonella RepID=A9IM93_BART1 E=1e-07 s/c=0.53 id=19% cov=87% --------------NVSEAFAGVGTSFENLHQELKNEINQVAGDSLVKQDEKTHVISVGGEKSGteVTLANIDGAARTLSGVKAGLLSEGSMEAINGSQL YSMSNALASY- >UniRef50_Q5XWC7(876-978:1760) BrpB n=1 Tax=Bartonella vinsonii subsp. arupensis RepID=Q5XWC7_BARVI E=0.001 s/c=0.43 id=22% cov=95% KTNDRVAGVEKEIAHIDNKVTNISATVTDLGKEVFDI-QQASAFAVLYDKNDDDSVNYNS---ITLGGDKTTEPVALLNVKDGRIAEDSHDAINGSQINK ISGDIAK-- >UniRef50_A1URN1(1005-1107:1235) Immunodominant surface antigen, Brp family n=1 Tax=Bartonella bacilliformis KC583 RepID=A1URN1_BARBK E=2e-08 s/c=0.59 id=17% cov=91% DVKEDVKGVQNQVNDLKDKVNGFDDKLNGIENAVDDMKDKIKDATDGVVSYDKDK-NGKKTNKITLQGGDESKPVTLDNVADGKVEKGSQEAVNGGQLH- --------- >UniRef50_B4EHQ5(1086-1201:1550) Putative haemagglutinin-related autotransporter protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EHQ5_BURCJ E=4e-05 s/c=0.42 id=25% cov=97% -LDGRMTTSETTITNIDNRVTANEGSITSLDNRVTVNEGAITKLADQIGSGSlglvqqasagDDLTVGANTDGAAVNFAGTAGNRKLTGVDAGAVSAAST EAINGMQLHGVSESVA--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * 2551 2690 * * * * 2606 * * * * 971 * * * * * * 1 0 * * * * * * 3013 0 0 I 2 * * * * * * * 1585 * 3354 * * 3382 * * * 2589 1705 * * 2 0 * * * * * * 4013 0 0 E 3 * * 2661 2283 * * * * 2224 * * 2414 * 3429 * * 2818 * * * 3 0 * * * * * * 4261 0 0 D 4 3461 * 1008 2390 * 2785 * * * * * * * * * 3720 * * * * 4 0 * * * * * * 4503 0 0 K 5 * * 3217 * * * * * 1364 * * 2398 * * 2391 3018 * * * * 5 0 * * * * * * 4503 0 0 I 6 3729 * * * * 1460 * 4220 * 2940 3826 * * * * * * 1949 * 4395 6 0 * * * * * * 4503 0 0 E 7 2923 * 3199 1684 * * * * 3959 * * * * * * 3720 1700 * * * 7 0 * * * * * * 4503 0 0 E 8 3145 * 3629 2471 * 3024 * 3883 * * * * * * 4089 2404 3192 3682 * * 8 106 * 3816 * * * * 4532 0 0 I 9 3715 * * 3171 * * * 4207 * 2971 3731 * * * * 3785 2329 1814 * * 9 0 * * * * * 0 4521 0 1212 L 10 3043 * * 1503 * * * * * 3094 * 4398 * 3941 * 2927 3496 3715 * * 10 0 * * * * 0 * 4521 0 1212 S 11 3456 * * 4339 * 3610 * * 2636 * * 3395 * 3745 * 1600 3092 * * * 11 0 * * * * * * 4711 0 0 K 12 4164 * 4778 2472 * 4578 * * 2232 * * 3957 * 3110 4791 2630 3397 * * * 12 0 * * * * * * 4995 0 0 I 13 * * * * 1781 * 3540 2470 * 3392 * * * * * * * 2797 * 2297 13 0 * * * * * * 4979 0 0 Y 14 3646 * 4990 3939 6297 * 2774 * 2844 * * 2476 * 3428 5103 3685 3467 * * 4178 14 0 * * * * * * 5004 0 0 H 15 4404 * 1902 * * 5145 3549 * * 4989 * 1146 * 6054 * 4733 4822 * * * 15 0 * * * * * * 5021 0 0 I 16 5310 * * * * * * 2971 * 3194 * 4552 * * * * 4906 595 * * 16 0 * * * * * * 5095 0 0 E 17 2181 * 4531 5537 * 1216 * * 5583 * * 3393 * 5514 * 4079 3521 * * * 17 0 * * * * * * 5244 0 0 N 18 3197 * 1916 3792 * 3783 * * 3442 * * 3001 * 4792 * 2543 4146 * * * 18 0 * * * * * * 5272 0 0 E 19 543 * 4961 4325 * 5659 * * 4087 * * 4783 6025 6003 4796 5551 * 5140 * * 19 0 * * * * * * 5283 0 0 I 20 5793 * * * 1498 * * 3381 * 2342 6331 5768 * 5272 * 5682 4699 2184 * * 20 0 * * * * * * 5335 0 0 A 21 2563 * 3106 2702 * 3832 * * 5301 * * 4027 * * * 2866 2100 4891 * * 21 0 * * * * * * 5335 0 0 R 22 3812 * 6828 5352 * 937 * * 5955 * * 2112 * * 6220 5968 3671 5793 * * 22 0 * * * * * * 5335 0 0 I 23 * * * 5717 5697 * * 2674 * 1344 6364 4584 * * * * 4211 1722 * * 23 0 * * * * * * 5334 0 0 K 24 4458 * 1332 4883 * 2747 * * 3779 * * 2544 * 6940 * 3326 5481 * * * 24 0 * * * * * * 5334 0 0 K 25 2514 * 3304 5893 * 2840 * * 2625 * * 3497 * 4752 6114 3667 2508 6588 * * 25 0 * * * * * * 5339 0 0 L 26 4353 * 6163 * 6806 4172 * * 5207 6285 * 2251 * 6052 2903 1526 3289 5356 * * 26 0 * * * * * * 5346 0 0 I 27 5900 * * * 3027 * * 1592 * 2984 4652 * * 5809 * * 3444 2092 * 5767 27 16 * 6497 * * * * 5342 0 0 Y 28 3442 * * 4772 * 5148 5754 * 2865 5759 * 4911 * 3581 6588 3183 1374 4906 * 6319 28 0 * * * * * 0 5341 0 1000 E 29 4675 * 2286 5031 * 4073 6151 * 5330 * * 1475 * 3352 * 3322 3851 * * * 29 0 * * * * * 0 5363 0 1000 T 30 4764 * * * 5932 * * 2261 * 2667 6547 2872 6137 * * 5541 3522 1686 * * 30 10 * 7244 * * * 0 5348 0 1000 N 31 5090 * 2876 5161 6612 3486 4268 6901 4426 6188 * 1762 * 4197 * 4354 2798 * * 4494 31 25 6748 6949 2807 222 * 0 5354 1000 1491 Q 32 3137 * 3345 4471 * 3425 * 5861 3586 * * 2138 * 4233 * 3661 2511 * * 6121 32 13 * 6817 * * * 0 5358 0 1857 K 33 3052 * 4025 3846 * 5348 4419 * 3366 * * 3523 * 3352 2060 4233 3915 4804 * * 33 30 * 5615 * * 1974 424 5358 0 2030 V 34 * * 5146 5969 4356 * * 1368 5832 2821 * * * * * * * 1472 * * 34 26 * 5799 * * 2272 335 5349 0 2295 D 35 3508 * 2528 4116 4918 5008 * 6019 3131 * * 3122 * 4485 * 4406 2069 4563 * * 35 15 * 6574 * * * 0 5327 0 2648 Q 36 4628 * 3283 2630 * 4409 5990 * * * * 1668 * 4800 6022 3488 3182 4412 * 5623 36 14 * 6644 * * 2357 313 5324 0 2788 N 37 4753 * 4589 4470 7176 5188 6631 2990 6868 2855 5811 2257 * 5467 * 5794 5383 1902 * * 37 100 6939 4092 0 * 1276 769 5342 1000 2647 T 38 5711 * 5704 2903 * 4036 * 4437 4026 * 5956 5054 * 5836 * 2156 1796 3580 * * 38 20 6151 * 0 * 1838 473 5329 1000 2929 S 39 4774 * 4505 3432 * 4872 * 4994 3392 5169 * 1848 * 3520 * 3325 2656 6087 * * 39 114 * 3715 * * * 0 5379 0 2455 A 40 3757 * 4203 5692 * 3151 5414 * 3568 * * 2434 * 2527 4001 2969 5204 4155 * * 40 0 * * * * 2379 308 5256 0 3251 I 41 4768 * * 6110 3865 * * 1669 6817 2366 6252 6030 * * * 5115 6846 1752 * * 41 13 * 6748 * * 2620 256 5246 0 3151 A 42 2117 * 3515 7009 * 5639 5551 * 3208 5188 * 2430 * 5475 * 3364 2718 5039 * 6701 42 151 * 3333 * * 1574 590 5187 0 2846 D 43 3687 * 2348 3112 * 3688 * * 4094 * * 2026 5730 4828 * 3402 4684 4605 * * 43 97 5164 4757 0 * * 0 5134 1600 2792 I 44 3897 * 5356 5373 3380 3498 * 2629 4142 2869 * 3641 * 4383 * 4742 4461 2903 * * 44 0 * * * * * 0 5132 0 2873 N 45 3432 * 3895 3796 * 4308 * 4627 4402 4385 5939 2950 5690 3736 * 3954 2121 4813 * 6406 45 27 5762 * 1000 1000 3038 187 5132 1000 2873 T 46 4742 * 2817 3291 5555 4183 4975 4598 4724 5366 * 3358 5694 3535 * 3872 2760 3507 * * 46 0 * * * * 3977 95 5130 0 2759 S 47 4075 * 4435 5887 * 3103 5537 6136 3225 5477 * 2853 * 2818 6079 2798 3571 4334 5418 * 47 86 6759 4358 2807 222 3817 106 5146 1000 2757 I 48 * * 5981 5043 4660 * * 1545 5333 2485 6240 * * 6275 * * 4683 1943 5693 5405 48 32 6040 7211 2000 415 1818 481 5025 1000 3135 T 49 3498 * 2956 5372 * 3127 * * 4643 * * 2760 * 4102 4671 3389 2692 3204 * * 49 9 * 7266 * * 2220 349 5068 0 2660 N 50 3945 * 3323 4588 * 3333 4888 * 4303 5184 * 2090 * 2500 * 3420 4814 4580 * * 50 65 4500 * 0 * 2149 369 5069 1640 2513 L 51 4191 * * 4512 4895 4546 * 3151 * 1778 5686 5579 * 3262 * 4905 6780 2353 * 4720 51 39 5230 * 1934 438 1635 561 5082 1583 2324 G 52 4652 * 1952 4798 5413 4189 * 5211 3283 5270 * 4381 * 2627 * 2885 3820 5974 * * 52 85 4133 * 2472 287 0 * 5072 1864 1943 T 53 5304 * 3275 4329 * 3322 6438 5366 2776 5626 * 5146 * 1955 4624 3081 3745 * * * 53 84 4141 * 1780 497 * * 5104 2564 0 D 54 4331 * 909 * * 4836 5573 5622 5665 4385 * 2419 * 4875 5156 * * 5341 * * 54 49 6172 5665 2322 322 * * 4986 1000 0 A 55 1047 * * * 6614 4017 * 3627 6153 6035 * 5876 * * * 2423 4106 3793 * * 55 37 * 5313 * * * 0 4934 0 1000 L 56 * * * * * * * 4558 5322 849 * * 5490 * * * 3069 2083 * * 56 0 * * * * 589 1577 4987 0 2214 S 57 4638 * 5658 * * 4563 5031 5038 3075 1926 6104 3229 * 3453 5685 3664 6085 3171 * 5772 57 33 * 5466 * * * 0 4980 0 1000 W 58 3438 * * 5642 6038 4064 * * 5215 * * * * * * * 5289 5512 989 2093 58 0 * * * * 952 1050 4926 0 1694 D 59 5306 * 1662 * * 3748 * * 3790 * * 2154 * 4418 * 2199 * 5466 * * 59 0 * * * * 0 * 4980 0 1000 D 60 3904 * 2174 2732 * 3088 * * 2756 * * 4084 6088 5341 4105 3970 4263 5432 * * 60 26 * 5832 * * * * 4990 0 0 E 61 3606 * 2411 2930 * 4325 * * 3459 6825 * 3841 6569 6698 * 3802 1799 * * * 61 85 4666 5813 2541 272 * 0 4946 2175 1000 E 62 2820 * 2264 2155 * 3999 * 6252 2563 3669 * 5035 6185 5710 * 5203 * 6417 * * 62 69 5518 5328 2172 362 * 0 4955 1630 2027 G 63 * * 4532 6258 * 1086 4527 * 2465 * * 3325 * 4320 7628 4840 4769 * * 5522 63 30 5625 * 2807 222 487 1803 4883 1000 2553 A 64 1013 * 6326 * 5874 3085 6117 5009 4121 * * * 6447 * 6593 3541 3231 4647 * * 64 100 4102 6866 2166 364 0 * 4919 2332 1000 F 65 4977 * 5858 * 1642 * * 3795 4628 5752 5780 5450 * * 6359 4908 3568 2793 6601 2522 65 20 6165 * 0 * 0 * 4992 1000 1000 S 66 5533 * 2599 * * * * 3531 5069 4341 * 5572 * 5472 * 2556 3570 1515 * * 66 0 * * * * * * 4990 0 0 A 67 956 * 3396 * * 5141 * 3923 6451 3128 * 4777 * 6281 * * 3272 5903 * * 67 15 * 6606 * * * * 4990 0 0 S 68 2844 * 5370 * 3470 3962 * 5187 3831 3138 6223 5824 * 2566 5609 2901 3614 4841 * * 68 19 6276 * 2585 263 * 0 5055 1000 1000 H 69 4991 * 5791 6759 * 2563 1059 * 5590 4424 * 3458 * * 5622 4640 3769 * * * 69 159 3645 5338 1860 465 * 0 5055 2818 1000 G 70 4997 * 3459 5036 * 670 * 5682 4085 * * 4445 6198 5326 * 4941 5411 * * * 70 134 3678 6527 1291 758 546 1666 4751 2313 1692 T 71 4540 * 4717 2696 * 2058 * * 2565 * 6808 3524 6558 7193 * 4807 2317 7481 * * 71 122 3891 6210 1842 472 880 1131 5016 2394 1476 S 72 2228 * 3861 5288 * 3217 * * 1840 * * 3165 * 4947 6000 3531 4078 * * * 72 108 5870 4185 3246 161 0 * 4766 1601 1606 G 73 3038 * 7040 2801 * 1743 * 6393 4315 * * 4668 * 5572 * 3327 2277 * * * 73 135 4557 4412 1390 693 0 * 4696 2426 2251 T 74 3413 * 4075 4528 * 3085 * * 5712 * * 1987 2020 * * 4474 3304 6633 * 6466 74 41 5162 * 1158 858 0 * 4586 1880 2059 N 75 * * * * * 5714 * * * * 5415 7262 * 3795 2222 1293 2793 3154 * * 75 24 * 5925 * * * * 4611 0 0 K 76 4232 * * 6331 * * * 5182 922 6198 6482 * * 4787 4006 * 2708 3282 * * 76 26 5787 * 0 * 0 * 4572 1000 1271 I 77 * * * * * * * 699 * 1671 * * * * * * * 3841 * * 77 0 * * * * * * 4109 0 0 T 78 6398 * 4449 5669 * 4525 5832 5093 3013 5994 6280 * * * 6289 3165 883 6221 * * 78 33 5452 * 3585 126 * * 4109 1299 0 N 79 * * 5602 6538 3479 2198 5567 * * 6507 * 985 * * * 3454 * * * 4940 79 0 * * * * * * 4109 0 0 V 80 * * * * * * * 4567 * 1599 * * * * * * * 672 * * 80 0 * * * * * * 4109 0 0 A 81 722 * 6413 7049 * 5509 * * 2575 3604 * * * 5367 6970 4324 5613 * * * 81 0 * * * * * * 4109 0 0 A 82 1263 * 1550 5238 * 7504 * * * * * 3030 6403 6588 * 4522 * 6843 6279 * 82 0 * * * * * * 4109 0 0 G 83 3597 * * * * 124 * * * * * * * * * * * * * * 83 82 6423 4525 0 * * * 4109 1000 0 E 84 2459 * 2237 3323 * * * 6507 2829 4514 6263 3631 * 5528 5020 3609 3707 7427 * * 84 0 * * * * * 0 4192 0 1072 I 85 * * * * * * * 1018 * 2117 * * * * * * * 1859 * * 85 0 * * * * * 0 4192 0 1072 A 86 2563 * 6115 3432 * * * * 6198 5368 * 3040 * * * 1168 3299 5818 * * 86 0 * * * * 0 * 4192 0 1072 S 87 1345 * 5324 2597 * 6507 * 6209 2624 * * * 6423 4098 * 3148 6792 4735 * * 87 0 * * * * * * 4109 0 0 D 88 4291 * 2436 4813 * 1785 6398 6209 * * 5771 2836 * * * 3780 2459 * * * 88 0 * * * * * * 4109 0 0 S 89 * * 5406 * * 5656 * * * * * * * * * 64 * * * * 89 0 * * * * * * 4109 0 0 T 90 * * * 6221 * * 4185 * 3574 * 4871 6101 * 4863 5748 2592 852 5266 * * 90 0 * * * * * * 4109 0 0 D 91 * * 430 2071 * * * * * * * * * 5669 * * * * * * 91 0 * * * * * * 4109 0 0 A 92 49 * * * * * * * * * * * * * * * * 4909 * * 92 0 * * * * * * 4109 0 0 V 93 * * * * * * * 1674 * * * * * * * * * 542 * * 93 0 * * * * * * 4109 0 0 N 94 5276 * * * * * * * * * 6489 338 * * * * 2540 * * * 94 0 * * * * * * 4109 0 0 G 95 * * * * * 61 * * * * * * * * * * * 4590 * * 95 0 * * * * * * 4237 0 0 S 96 3607 * 4335 * * 1792 6905 * 5029 * 6448 4078 * 5593 * 1154 * * * * 96 0 * * * * * * 4241 0 0 Q 97 * * * * * * * * * * * * * 0 * * * * * * 97 0 * * * * * * 4241 0 0 L 98 * * * * * * * 3643 * 140 * * * * * * * 6341 * * 98 0 * * * * * * 4241 0 0 Y 99 * * * * 2857 * 2623 * 5383 * * 3645 * * * * 4942 * 3224 1132 99 0 * * * * * * 4211 0 0 E 100 2125 * 3834 3419 * 3784 * * 3471 6428 6307 4417 * 5392 7529 2154 3267 6003 * * 100 0 * * * * * * 4187 0 0 T 101 6658 * * * 7037 * * 3791 * 2589 3294 * * 6822 * * 976 3344 * 5241 101 0 * * * * * * 4168 0 0 N 102 4968 * * 5614 * 3132 6097 * 6156 * * 1027 * 4476 5592 2324 4358 * * * 102 0 * * * * * * 4133 0 0 M 103 5418 * 3150 2303 * 4904 * * 5279 6833 5684 3405 * 1572 * 3583 4360 6503 * * 103 0 * * * * * * 4132 0 0 L 104 4449 * 3062 5257 * 5265 6357 * 3300 6689 5896 3074 * 2565 3550 2995 3052 * * 5439 104 0 * * * * * * 4132 0 0 I 105 * * * * 4646 * * 2472 * 2319 6371 * * * * * 5563 873 * * 105 0 * * * * * * 4055 0 0 S 106 718 * 6538 4806 * 5878 * * * * * 6541 * * * 2200 3318 * * * 106 0 * * * * * * 4009 0 0 Q 107 5059 * * 5436 * * * * 1603 6031 * 2106 * 3225 4167 3674 2954 * * * 107 0 * * * * * * 3944 0 0 Y 108 * * * * 4049 * * * * 3571 * * * * * * 5617 * * 260 108 0 * * * * * * 3625 0 0 N 109 * * * * * * * * * * * 0 * * * * * * * * 109 0 * * 0 * * * 2325 0 0 //