HHsearch 1.5 NAME c2ynyC_ FAM FILE c2ynyC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2ynyC_.a3m DATE Wed Jan 9 22:11:09 2013 LENG 105 match states, 105 columns in multiple alignment FILT 113 out of 219 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4600 1.4635 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCBCTTSCBCCCCEEETTEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHC >sa_dssp DEEEEEDEEEEDEDEDEEDEDDDDEEEDDEEBDCDADEDDDEBDCDEEBDDCEBDCEBEECECEDDDDBEDBEEDDDCEEEDEDEEDEDEDEDEEDEEEE DEEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEECCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHC >ss_conf 9047899999998765421134443457767888998608885356898197317897383006699999721022223566799887656653210113 33309 >Consensus xxxxxklxxxxsqlxxxnxxvaxxxxxLxxxxxxvAxxlGGgAxxxxxGxxtaPtyxVxxxsyxnVgxAfxxvdxsitxixxxIxxvxxxixxxxxxxax ixkxx >c2ynyC_ KQIEDKIEEILSKIYHIENEIARIKKLIYSLSQSVADRLGGGASVNSDGTVNAPLYEVGTGIYNNVGSALSALNTSMKQIEDKIEEILSKIYHIENEIAR IKKLI >UniRef50_C7LFD0(608-691:994) Outer membrane protein n=47 Tax=Brucella RepID=C7LFD0_BRUMC E=2e-07 s/c=0.68 id=30% cov=67% ---------------------------LHRVAHTIAEHLGGDAHVNADGSVIGPQYTVQKKRYKTIYDAFGGVDENLANINDILHDIESgggiKYFHANS --------- >UniRef50_C6ABG4(1848-1954:3158) Surface protein/Bartonella adhesin n=1 Tax=Bartonella grahamii as4aup RepID=C6ABG4_BARGA E=3e-06 s/c=0.50 id=31% cov=89% -----KLSGLLGGAINETSDEAVTGSQLHTLGSSVASYFGGGAAFK-DGSFTAPTYNISNvsddgkvttNSHNDVGSAFSDLDTSVKNVNthltNEVKNF TEKLTNITQEV------- >UniRef50_A9IM93(1218-1325:5035) Surface protein/Bartonella adhesin n=6 Tax=Bartonella RepID=A9IM93_BART1 E=3e-13 s/c=0.71 id=28% cov=94% KKANSKLTHLLDGTISKDSTDAITGKQLYSLSDNVAKSFGDGAGYDAEGNWKTPTFKVKTvkdngeseeQEYKNVAAAFEGVGASFTNIKKDI---TNQI NHLQSEDSAV---- >UniRef50_C6ABG0(1590-1679:2269) Surface protein/Bartonella adhesin n=1 Tax=Bartonella grahamii as4aup RepID=C6ABG0_BARGA E=3e-09 s/c=0.70 id=22% cov=70% -----------SQLFTTNQNVSAVTGDLKKVAENTSKYFGGSTDVLAG---IEPTFIIQDNTYHNVTDAFTGVNTSITNIDNKIIEM------------- ----- >UniRef50_B2JGX0(3755-3849:4384) YadA domain protein n=13 Tax=Proteobacteria RepID=B2JGX0_BURP8 E=2e-05 s/c=0.53 id=25% cov=62% ---------------------------VNSVGTSISNVIGGGSTYDAsTGTITGPTFNIGGSTVTTVAGAITNLDGRVTQNTTDISNITTQI-------- ------ >UniRef50_D1AWN7(1186-1281:2092) YadA domain protein n=6 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWN7_STRM9 E=2e-06 s/c=0.56 id=32% cov=75% ------------KISNVANGISDNDAVNVSQLKKYVDALGGNAKIDDKGNVTGPTYKLKvgattngtndaTKDYNTVGDALKALDDAIGNSSKNITDLTN K--------------- >UniRef50_C6ABG4(2094-2194:3158) Surface protein/Bartonella adhesin n=1 Tax=Bartonella grahamii as4aup RepID=C6ABG4_BARGA E=1e-07 s/c=0.57 id=26% cov=63% ---------------------------LYAITDDLSNLLGGAVSFDGK-NFKGLQYnlsnidkdgKVTDKSHTNVGSAFAGLDDNIKTVNARIKEVSEGV AH------------ >UniRef50_B5WW38(158-261:316) Putative uncharacterized protein (Fragment) n=1 Tax=Burkholderia sp. H160 RepID=B5WW38_9BURK E=4e-05 s/c=0.47 id=28% cov=71% ---------------------------LFGVASSAATALGGGAAFDPvSGTVTAPTYVLQnGGTTHTVAEALSGLDSALTDANANIGKNSADISSLGSDV SGL---- >UniRef50_Q89IU6(352-439:762) Blr5538 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89IU6_BRAJA E=4e-08 s/c=0.67 id=32% cov=60% ---------------------------LYTANQRIAAAFG--TTLDAGGQMVAPSYMIQGVSYNNVGSAFSAVNAALSSTATSISNLQTQI--------- ----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 0 * * * * * * * * * * * 1 0 * * * * * * 1897 0 0 Q 2 * * * * * * * * 673 * * * * 1424 * * * * * * 2 0 * * * * * * 1897 0 0 I 3 1692 * * * * * * 1424 * * * * * * * * 1654 * * * 3 0 * * * * * * 1897 0 0 E 4 * * * 872 * * * * * * * 1141 * * * * * * * * 4 0 * * * * * * 2228 0 0 D 5 * * 1782 * * * * * * * * * * * 1968 1141 * * * * 5 0 * * * * * * 2228 0 0 K 6 * * * * * * * * 0 * * * * * * * * * * * 6 0 * * * * * * 2380 0 0 I 7 * * * * * * * 1718 * 523 * * * * * * * * * * 7 0 * * * * * * 2863 0 0 E 8 * * * 1718 * * * * 1863 * * * * * * 1688 3173 * * * 8 0 * * * * * * 2863 0 0 E 9 * * * 2648 3001 1137 3173 * * * * 2737 * * * * * * * * 9 0 * * * * * * 2863 0 0 I 10 * * * * * * * 1718 * 873 * * * * * * * 2737 * * 10 0 * * * * * * 2863 0 0 L 11 2737 * * * * * * * * 503 * * * * 2793 * * * * * 11 0 * * * * * * 2863 0 0 S 12 2694 * 2526 * * 3526 * * * * * 4695 * * * 872 * * * * 12 0 * * * * * * 3754 0 0 K 13 4377 * * * * 1697 * * 2777 * * * * 1007 * * * * * * 13 0 * * * * * * 4047 0 0 I 14 2955 * * 4545 * * * 2374 * 1004 * * * * * * 4298 3542 * * 14 0 * * * * * * 4047 0 0 Y 15 * * * * 1838 * * 1890 * * * * * * * 2807 * 3542 4577 2474 15 0 * * * * * * 4047 0 0 H 16 1844 * * 3767 * 3694 3355 * 4889 * * 2302 * * * 4364 2811 * * 4459 16 0 * * * * * * 4071 0 0 I 17 3450 * * 3340 * * * 3645 4482 4454 * * * * * 4315 1267 2527 * * 17 0 * * * * * * 4109 0 0 E 18 2910 * 3061 4539 * * * * 4625 * * 1114 * 3643 * * 3042 * * * 18 0 * * * * * * 4109 0 0 N 19 * * * 3585 * * * * * * * 1985 * 1790 4508 1810 4454 * * * 19 0 * * * * * * 4109 0 0 E 20 3539 * 3200 3172 * 3018 4463 * 5002 * 4302 2790 * 4568 * 4356 2594 4560 * * 20 0 * * * * * * 4171 0 0 I 21 * * 3711 2792 * * * 1688 * 4568 4356 * * * * * 4567 1575 * * 21 0 * * * * * * 4171 0 0 A 22 1249 * * 4510 * 3541 4897 4555 4568 * * * * * 4602 1931 5180 * * * 22 0 * * * * * * 4171 0 0 R 23 3018 * 3622 5002 * * 4602 2790 * * 4302 2467 * * 3692 4463 3210 3108 * * 23 0 * * * * * * 4171 0 0 I 24 * * * 4555 * * 4733 3605 4510 2233 * 3506 * * * * 1937 2108 * * 24 0 * * * * * * 4171 0 0 K 25 * * 2343 4585 4733 1330 * 3995 4652 * * 3742 * * * 4463 3274 * * * 25 0 * * * * * * 4171 0 0 K 26 2478 * * 5074 * 3102 3932 * 2052 * * 2620 * * * 2966 3701 * * * 26 55 * 4744 * * * * 4161 0 0 L 27 * * 3140 * * 5165 4816 * 4474 4744 * 3716 * 1125 4989 * 4120 3094 * * 27 0 * * * * * 0 4120 0 1000 I 28 * * * * 6359 * * 3099 * 464 * 4898 * * * * * 3152 * * 28 0 * * * * * 0 4470 0 1000 Y 29 5160 * 6560 4811 2815 * 3264 * 5127 * * 3174 * * * * 4864 4174 6831 1179 29 0 * * * * * 0 4470 0 1000 S 30 3166 * 3812 4422 * 3180 * 6616 3785 5945 6586 3759 * 4518 5220 1800 3064 * * * 30 0 * * * * * 0 4490 0 1000 L 31 3261 * * * 6831 * * 2974 * 2057 3937 6964 * 3753 * 6464 2430 2679 * 5729 31 0 * * * * * 0 4524 0 1000 S 32 2496 * * * * 2385 5117 5758 * 3561 5654 2609 * 5086 6939 2196 5185 * * 4956 32 0 * * * * * 0 4522 0 1000 Q 33 3872 * 3236 3600 * 4963 6158 * 2946 * * 4206 * 2470 5327 2488 2949 * * * 33 0 * * * * 0 * 4535 0 1000 S 34 4379 * 3084 5121 * 3987 6161 6783 3844 * 6363 2762 6242 4328 6624 1627 3561 * * 6912 34 0 * * * * * * 4563 0 0 V 35 5288 * * * 4139 * * 2040 * 3085 5636 * * * * * 3495 1215 * 5878 35 0 * * * * * * 4587 0 0 A 36 572 * * 6012 * 6403 * * * 6341 * * * * * 2912 4612 3135 * * 36 0 * * * * * * 4587 0 0 D 37 3136 * 3332 5418 * 4775 6816 * 2704 * * 2661 * 4765 4656 2278 3135 6623 * * 37 0 * * * * * * 4587 0 0 R 38 1963 * * * 3805 5893 5230 4666 * 4841 * 5332 * * 7000 3826 5108 5759 * 1309 38 0 * * * * * * 4587 0 0 L 39 * * * * 1363 * * 4053 * 860 * * * * * * * * * * 39 0 * * * * * * 4538 0 0 G 40 * * 5864 * * 55 * * * * * * * * * 5646 * * * * 40 14 * 6646 * * * * 4538 0 0 G 41 6127 * 5785 * * 124 * * * * * 5643 * * * 6312 * 5859 * * 41 0 * * * * * 0 4534 0 1000 G 42 5730 * 2989 4537 * 650 * * * * * 3492 * 7258 6347 4624 6140 * * 6312 42 18 * 6373 * * 0 * 4534 0 1000 A 43 467 * * 5871 * * * * * * * * * * * 2756 3681 4909 * * 43 15 6581 * 0 * * 0 4585 1000 1000 S 44 3029 * 3536 4260 * 2608 6166 5340 2831 6121 * 6581 * 5602 * 2882 2426 5767 * 6581 44 0 * * * * 0 * 4585 0 1000 V 45 6928 * 5171 * 2704 * * 3686 * 4056 5977 * * * * * * 1723 * 1498 45 243 6178 2822 0 * * * 4538 1000 0 N 46 6624 * 1918 6962 7090 3485 5834 5556 2879 4803 * 1579 * * * 4407 6563 5837 * * 46 329 3612 3034 0 * 0 * 4441 2648 3147 S 47 1718 * 4307 2274 * 4668 * 6228 4346 5138 * 5393 4017 * * 3530 3252 4991 * * 47 102 4427 5530 0 * 0 * 4457 2069 3007 D 48 5935 * 1537 4223 * 3167 * * 3502 * * 2354 * 5537 * 3982 3243 * * * 48 146 * 3375 * * 0 * 4524 0 1768 G 49 * * * 6277 * 62 * * * * * 6010 * 6211 * * * * * * 49 44 * 5058 * * 2187 358 4378 0 2503 T 50 3120 * 5716 3507 5228 6198 * 4969 3212 * * 3050 * 3743 * 3092 2138 4109 * * 50 0 * * * * 2453 291 4368 0 2741 V 51 * * * * 3058 5733 * 2439 * 2777 5505 * * * * * * 2308 1704 * 51 27 5733 * 0 * 0 * 4382 1000 2445 N 52 5332 * 6068 * 6126 6986 * 3548 3095 6586 * 4641 * 4896 5791 2804 1481 3122 6756 6974 52 0 * * * * * * 4538 0 0 A 53 1121 * 4514 6878 * 2172 7060 * 3998 6562 * 3684 * 5364 6863 5042 5780 5254 * * 53 0 * * * * * * 4538 0 0 P 54 * * * * * * * * * 5733 * * 53 * * * 5876 * * * 54 0 * * * * * * 4538 0 0 L 55 4148 * 5099 5434 * 5859 6126 5151 3648 5643 * 4479 * 4703 * 2926 1010 5620 * * 55 0 * * * * * * 4538 0 0 Y 56 * * * * 1307 * * * * * * * * * * * * * * 747 56 76 4286 * 3213 165 * * 4538 2428 0 E 57 5630 * 6796 3924 * * 5315 5018 2113 * 6656 2862 * 4490 6647 4566 1842 3564 * 6628 57 32 5508 * 2592 262 * * 4538 1859 0 V 58 * * * * * * * 1467 * 2358 * * * * * * * 1174 * * 58 125 3713 7265 2709 240 * * 4538 2987 0 G 59 5333 * 6312 4814 * 2387 6952 * 2751 * * 4463 * 2026 * 2600 3229 6829 * 6971 59 244 2684 * 2968 197 * 0 4540 3428 1000 T 60 5108 * 3473 3379 * 1359 * * 3320 * * 3786 * 6830 * 5018 2452 * * * 60 232 2749 * 3180 169 0 * 4540 3049 1000 G 61 4967 * * 3331 * 3185 * 5589 2009 * * 3149 * 4072 6314 3840 2448 4277 * * 61 25 5862 * 2698 242 * * 4538 1365 0 I 62 4912 * 3522 4070 * * * 6013 3596 * * 4064 5323 7035 4604 1751 1829 6638 * * 62 46 5004 * 3170 170 * * 4538 2018 0 Y 63 5524 * * * 3485 * 3403 * 6875 * * * * 3756 5750 6759 6969 4057 * 699 63 0 * * * * * * 4538 0 0 N 64 6793 * 3396 5544 6126 5000 3699 * 4021 * * 1672 5123 5606 3937 3452 2675 * * 6153 64 9 7265 * 3459 138 * * 4538 1000 0 N 65 * * 2167 * * 5102 * * * * * 998 * * * 3648 2575 * * * 65 0 * * * * * * 4538 0 0 V 66 5561 * * * 6425 * * 4968 * 6385 5381 * * * * * * 153 * * 66 0 * * * * * * 4538 0 0 G 67 2079 * 6597 5759 * 860 * * * * * 5108 * * * 4136 4111 5840 * 5487 67 0 * * * * * * 4538 0 0 S 68 3023 * 1343 3273 * 3852 * * 6064 * * 6528 * 7020 * 1982 5419 * * * 68 0 * * * * * * 4541 0 0 A 69 0 * * * * * * * * * * * * * * * * * * * 69 0 * * * * * * 4541 0 0 L 70 * * * * 1036 * * 2956 * 1510 * * * * * * * 4947 * * 70 0 * * * * * * 4541 0 0 S 71 2211 * 3784 3422 * 3134 * * 4511 * * 4211 * 6377 6951 2380 2365 * * * 71 0 * * * * * * 4541 0 0 A 72 1599 * 4478 5820 * 1307 6941 * * 6058 * 3296 * 6306 6383 6528 6423 5009 * * 72 0 * * * * * * 4541 0 0 L 73 5021 * * * * * * 2960 * 1309 * * * * * * * 1194 * * 73 0 * * * * * * 4542 0 0 N 74 * * 787 6646 * 2884 * * * * * 2271 * * * 4406 6258 * * 7016 74 0 * * * * * * 4522 0 0 T 75 4002 * 2908 4545 * 2418 * 6563 3724 * * 2665 * 4415 * 2958 2689 * * * 75 0 * * * * * * 4604 0 0 S 76 2920 * * 5922 * 5250 6097 * 5428 5644 * 2980 * 5973 2747 1219 5782 5155 * * 76 0 * * * * * * 4604 0 0 M 77 * * 5391 * 2243 * * 1739 * 2675 3854 * * * * * 5130 2453 * 5131 77 0 * * * * * * 4709 0 0 K 78 4845 * * 5171 * 3964 * 5835 2847 * * 4172 * 5393 * 3158 1177 3870 * 6072 78 0 * * * * * * 4697 0 0 Q 79 5473 * 3043 5557 * 5654 * * 3408 * * 1552 * 4166 4767 3460 2471 5952 * * 79 0 * * * * * * 4697 0 0 I 80 5239 * * * 4988 * 6555 1587 * 2428 6413 3084 * * * 4669 5266 2199 * * 80 0 * * * * * * 4697 0 0 E 81 4508 * 3048 5597 * 6556 3032 6800 4233 * * 1762 * 3663 5742 3822 3249 * * 4289 81 18 7443 7280 2000 415 * * 4750 1000 0 D 82 3764 * 2803 * * 4447 6217 * 3274 * * 1766 * 4621 * 3135 2540 * * * 82 0 * * * * * 0 4755 0 1000 K 83 5060 * 3051 3179 * * 4596 5839 3683 * * 3143 * 2630 1991 4157 5654 * * * 83 0 * * * * * 0 4783 0 1000 I 84 * * * * 5096 * * 726 * 2432 5712 * * * * * 6338 2742 * * 84 15 * 6585 * * 0 * 4783 0 1000 E 85 3690 * 3684 3536 6573 3817 5760 5304 2800 6480 * 2755 * 4883 * 3219 2403 * * * 85 0 * * * * * 0 4754 0 1000 E 86 * * 2274 2119 * 4914 5780 * 3726 * * 1917 * 5881 5615 3681 4162 * * * 86 10 7117 * 0 * * 0 4737 1000 1000 I 87 * * * 4451 6892 * 6228 2303 4976 2693 4595 3663 * 5212 * 6179 6067 1444 * * 87 0 * * * * 0 * 4672 0 1000 L 88 3878 * * 2908 * * * 2811 4289 4510 * 5043 * 3714 5696 3242 2115 3550 * 6209 88 0 * * * * * * 4694 0 0 S 89 5857 * 4608 3409 * 4296 * * 3701 * * 1562 * 4911 5901 2456 2748 * * * 89 67 4457 * 2000 415 * * 4694 1756 0 K 90 6561 * 2638 4320 * 3231 * * 2368 * * 2679 * 2241 6021 6215 4451 * * 4787 90 15 6571 * 0 * * * 4689 1000 0 I 91 5596 * * * 3089 * * 1550 * 2752 5923 * * * * 4875 * 1885 * 4302 91 0 * * * * * * 4635 0 0 Y 92 3212 * * * 3433 3595 * * 3928 3121 * 3428 * * 3597 4041 2235 5361 * 3989 92 0 * * * * * * 4347 0 0 H 93 * * 5333 5044 * * 2089 4851 * * * 2133 * 3553 * 2481 5022 2716 * * 93 0 * * * * * * 4417 0 0 I 94 2913 * * * 5122 * * 1965 2787 3258 4950 * * 5143 4594 * 3628 2736 * * 94 0 * * * * * * 4341 0 0 E 95 * * * 3953 3480 4860 * 2864 3129 * * 2531 * 3575 3270 3765 3382 * 5082 * 95 0 * * * * * * 4341 0 0 N 96 * * 4391 * * 3884 * * * * * 1360 * 2423 4950 2517 3302 * * * 96 0 * * * * * * 4341 0 0 E 97 4850 * 2434 1613 * 4658 * * 4782 * * 2616 * 4710 * 2849 4746 * * * 97 0 * * * * * * 4275 0 0 I 98 * * 4242 4614 4425 * * 2095 3968 2636 * 3466 * * * 4502 4165 2248 * * 98 0 * * * * * * 4099 0 0 A 99 1159 * * * * * * * * * * * 3893 * * 2566 1662 * * * 99 0 * * * * * * 3986 0 0 R 100 2782 * 3717 * * 2668 * * 2203 * * 2838 * 3166 3810 3618 * * * * 100 0 * * * * * * 3881 0 0 I 101 * * * 2851 * * * 1557 * 2461 * * * * * * * 1557 * * 101 0 * * * * * * 3700 0 0 K 102 * * * * * * * 2038 1869 * * * * * 2595 * 3206 2259 * * 102 0 * * * * * * 3201 0 0 K 103 * * * * * * * * 265 * * * * 2573 * * * * * * 103 0 * * * * * * 2560 0 0 L 104 * * * * * * * 1100 * 1807 * * * 2013 * * * * * * 104 0 * * * * * * 2178 0 0 I 105 * * * * * * * 1000 * * * * * * * * * 1000 * * 105 0 * * 0 * * * 1645 0 0 //