HHsearch 1.5 NAME c2xnqA_ FAM FILE c2xnqA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2xnqA_.a3m DATE Sat Sep 18 08:59:04 2010 LENG 77 match states, 77 columns in multiple alignment FILT 119 out of 6184 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.6 EVD 0.4419 1.1974 SEQ >ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHCCTTSEETTEECEEEECCCCC >sa_dssp EEEEABADABDBBEEEBDEEDADECACECCEBEDBCCDEEDBBABADCCDBADDACECCEEECCEDDBEBECCEDEE >ss_pred CCCCCEEEECCCCHHHCCHHHHHHHHHHCCCCEEEEEECCEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEECCCC >ss_conf 98742699838993558999999999630574256632884999987989999999972891516679999851689 >Consensus sxxxxxlfVxnLpxxxxxexxlxxxFxxxgxixxxxxxkgxafVxfxxxxxAxxAxxxxxxxxxgxxixvxxaxsns >c2xnqA_ SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEESQEMNFGKKLILEVSSSNA >UniRef50_UPI0000DB6F96(357-441:935) PREDICTED: similar to CG6995-PA, isoform A n=1 Tax=Apis mellifera RepID=UPI0000DB6F96 E=2e-09 s/c=0.75 id=17% cov=100% TTVSRNLWVSGLSSS-TRATDLKQIFSKYGKVIGAKVVtnartpgaRCYGYVTMSTSEDAAKCIQHLHRTELHGRVIsVEKAKGDT >UniRef50_B2WA73(407-478:527) NTF2 and RRM domain containing protein n=2 Tax=Pleosporineae RepID=B2WA73_PYRTR E=3e-06 s/c=0.73 id=21% cov=92% -----RAYIKNV-YSQVEDGALKAALSKFGEVEYLDISRGknCAFVDFKTPAGFQAAVAANPHTINGIEIKVEERRTN- >UniRef50_B6ADJ0(18-100:304) RNA recognition motif. family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6ADJ0_9CRYT E=4e-06 s/c=0.63 id=21% cov=94% ------LYVNNLNDRVPTtelEKNLLQKFGNFGEIVNITCMKSFyrrgqAWITFKDIETASKALTAIQGVnMFNKPIRAAFAHTTS >UniRef50_C4R2R8(1-81:382) Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4R2R8_PICPG E=5e-05 s/c=0.60 id=18% cov=94% --MSSVVYLGGIPY-HWDLDTIKSVVYGSGRIVDVRCMmdhpgknKGFCFVEYQTPAEAERAVDILARIHIqgnNRTLRAELSK--- >UniRef50_D0VWM8(175-251:414) Protein F44G4.4c, partially confirmed by transcript evidence n=5 Tax=Caenorhabditis RepID=D0VWM8_CAEEL E=0.0007 s/c=0.58 id=22% cov=66% ----------------------QKYFEDIGTVVFCEIKrksdgnsKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKV----- >UniRef50_B9H3A7(100-181:264) Predicted protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H3A7_POPTR E=2e-06 s/c=0.65 id=16% cov=96% --VGTKLYVSNLDYG-VTNEDIRELFAEIGDLKRFAVHYdkngrstGSAEVMYTRRSDAFSALKKYNNVLLdGRPMKIEIVGAN- >UniRef50_D2UYV2(49-124:496) RNA recognition motif-containing protein n=1 Tax=Naegleria gruberi RepID=D2UYV2_NAEGR E=2e-06 s/c=0.71 id=20% cov=99% SGLRHRIFAGNLDFGTTKEQLYDAFSKCGKIVDEIRLHPGYAFIQFESEQACSKAIATLSGTQLcSKRIDVQMAKG-- >UniRef50_A9VAQ7(635-715:1170) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VAQ7_MONBE E=0.0008 s/c=0.55 id=19% cov=97% TSMEYKVFVGNIPFA-ADEDELRsvfpsqDIVHAEIIREDNGKSRGAGYLVFGNEEDYQAALAQGVADLHGRQLRITMANS-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 391 2074 * * * 1 0 * * * * * * 4920 0 0 H 2 * * 2779 2942 * 3581 1893 * * * * 2266 4533 * * 3728 4481 * * * 2 0 * * * * * * 5656 0 0 M 3 5588 * * 3848 5509 * * 5202 5067 2903 1730 5187 4485 * 5327 5119 5300 2032 * * 3 0 * * * * * * 6471 0 0 K 4 5173 * 6157 3447 * 2647 * * 3479 * * 3303 6217 3823 4944 1682 3510 * * * 4 0 * * * * * * 7184 0 0 S 5 5213 3529 * * * 6127 4938 * 4143 * * 5116 5819 6075 2545 2189 1713 * * 5268 5 19 * 6281 * * * * 7255 0 0 R 6 5005 6067 * 5114 * * * * 2059 * * 3808 * 6214 1806 5401 2291 4090 * 5172 6 69 4423 * 401 2043 0 * 7428 2546 1000 L 7 6568 6705 * * 6401 * * 2495 * 1138 6478 * * * * * * 1621 * * 7 0 * * * * * * 7704 0 0 F 8 6970 6699 * 6638 991 * 6261 6864 * 4575 * * * * * 6658 * 5018 4619 1624 8 0 * * * * * * 7720 0 0 I 9 4856 5741 * * * * * 1952 * 4132 6598 * * * * * 5583 737 * * 9 14 6650 * 0 * * * 7724 1000 0 G 10 3857 6103 5445 5052 * 1204 5664 * 3904 * * 5192 * * 3705 2635 3968 * * 6170 10 12 * 6958 * * * * 7724 0 0 N 11 * * 5247 6448 6645 1962 5860 * 4090 * * 980 6169 5785 4637 5153 * * * 6362 11 14 * 6725 * * * 0 7721 0 1000 L 12 * * * * 5290 * 6633 1982 * 771 * * 6338 * * * 6736 3385 * 6986 12 127 * 3565 * * * 0 7714 0 1581 P 13 3672 * 3235 * * 4901 5556 * 6143 * * 2958 1027 6733 5410 3842 5366 * * * 13 310 4954 2633 1432 668 158 3265 7604 2303 4579 L 14 4876 * 4445 4772 3390 6122 4532 5458 4725 3836 * 4894 2474 5336 5908 4092 3182 6572 4340 3105 14 376 * 2125 * * 0 * 7588 0 5182 K 15 3714 6646 4149 2534 6127 4149 6745 6223 3135 * 6380 5469 4656 3941 3078 2529 4429 * * * 15 401 6420 2114 1585 585 0 * 7599 1000 5613 N 16 4752 6622 2797 5443 5583 6477 4893 4905 3295 4923 5237 2307 6592 4304 4991 4011 4290 3570 6507 5478 16 64 * 4522 * * 0 * 7645 0 5639 V 17 2897 4303 6482 6517 4870 * * 3143 * 3318 4228 6543 6748 * * 6762 2534 1839 6571 * 17 46 * 4980 * * 415 2000 7699 0 2614 S 18 * * 2630 3941 6770 * * 6554 3553 5957 * 4038 5135 5858 5320 2675 1551 6444 * 6461 18 13 6755 * 1585 585 398 2051 7666 1000 2768 K 19 4438 6749 2697 1229 * * 6287 5272 3102 5105 * 5143 5609 5289 5242 6211 6663 5073 6874 5875 19 32 6176 6968 2585 263 0 * 7707 1000 1000 E 20 4100 * 2099 2158 6559 5627 4653 7031 4134 6061 * 6041 5172 3380 3968 3970 4687 6650 * 5753 20 28 6833 6552 1585 585 0 * 7715 1000 1000 D 21 5630 * 2103 2311 5200 5980 6230 5005 4184 4077 3814 4578 6750 4149 4980 4347 4345 5879 * 5797 21 16 6461 * 1585 585 0 * 7712 1000 1000 L 22 * * * * 4776 * * 2176 6541 1083 5476 * * * 5055 * * 2415 * 5703 22 0 * * * * * * 7717 0 0 F 23 3805 * 6504 3247 4213 7051 4748 6274 2260 4893 5969 5141 * 5002 2275 5931 4520 5729 6881 3495 23 13 6801 * 2585 263 * * 7719 1000 0 R 24 3645 * 3149 2369 * 6675 4460 5481 3057 5638 5702 4063 5303 3820 3994 3704 4624 * 7056 4914 24 0 * * * * * * 7719 0 0 I 25 4523 5743 6881 5154 3105 * 3697 2552 6808 2078 4887 * * * 4749 6139 4813 3359 * 3766 25 13 6821 * 1585 585 * * 7719 1000 0 F 26 5215 6083 * * 467 6203 * * 6510 3057 5318 * * 6342 * 6504 * 5250 * 6016 26 37 5320 * 1270 773 * * 7719 2192 0 S 27 4269 5798 5342 2369 * 2941 6800 5113 3466 5856 6533 5899 6911 4704 3916 2159 6543 5854 * 4520 27 39 5236 * 1477 642 * * 7719 2340 0 P 28 3538 5346 4695 4646 4948 5067 4534 6181 2539 5265 6818 5614 3312 3112 3164 3945 5385 4931 * 6095 28 18 6342 * 2585 263 * * 7719 1000 0 Y 29 4042 4683 5691 6800 1482 6504 4866 3993 * 5881 * 7357 6779 5975 6931 6644 7032 4493 5452 1918 29 82 4185 * 2857 214 * * 7719 3410 0 G 30 4933 * 6543 5081 6818 602 6886 4008 4293 * 5543 5706 4586 6756 * * * 4433 * * 30 14 6651 * 2000 415 * * 7719 1000 0 H 31 6110 5828 4343 2835 6468 4564 6239 4103 2612 5719 * 4463 3411 5393 3678 4269 3042 4385 * 6881 31 49 4901 * 2026 407 * * 7719 2682 0 I 32 * 6606 4176 * 4504 6983 5112 1576 6500 2968 6808 * 7032 * 5778 * 4716 1804 * 5638 32 11 7063 * 3322 152 * * 7719 1000 0 M 33 4618 5737 4444 3236 5098 5628 * 4427 2640 4220 5216 4208 * 6776 3724 4339 3847 2722 5882 5310 33 33 5457 * 3067 183 * * 7719 2244 0 Q 34 5622 * 2596 2533 7431 4633 5945 5665 3547 * 6204 3917 * 4044 2832 2932 4939 * * 5088 34 40 5181 * 2409 301 * * 7719 1760 0 I 35 4106 2764 * 6756 3320 * * 2392 * 4403 5697 5205 * * 6911 5239 3400 2004 7258 5985 35 94 3994 * 2356 313 * * 7719 3815 0 N 36 5190 * 3612 3952 4771 3729 4060 4487 2792 5992 5930 4462 7007 5301 2513 3954 3987 4765 * 6048 36 23 5963 * 2820 220 * * 7719 1819 0 I 37 5162 5724 5771 * 5620 6983 6756 2100 3812 2251 4262 5419 4680 5270 4795 5708 4652 2916 6048 * 37 483 1815 * 2581 264 * * 7719 6415 0 K 38 6038 6783 * * 5335 6342 2958 5633 2777 6465 3390 4065 3366 5379 4800 2126 5027 4414 * 6183 38 278 2510 * 2548 271 * * 7719 5659 0 N 39 6468 6675 6533 5040 6203 4770 6831 * 1563 6756 6947 4651 6504 4988 1599 4730 4360 6783 * 6037 39 143 3402 * 2807 223 * * 7719 4333 0 A 40 4166 7235 4939 5264 * 932 5164 * 5023 7112 7183 4017 5301 5243 3406 5664 4879 6931 * 6335 40 122 3780 6910 2780 227 * * 7719 4083 0 F 41 5309 4261 * 6960 1754 * 5399 4685 5148 7228 4939 6685 * 4899 6934 5486 4247 4668 * 1633 41 26 5811 * 3757 111 0 * 7718 1717 1000 G 42 1095 3365 * * * 1634 * * 7007 4673 * * * * * 4891 * 5434 6821 * 42 0 * * * * * * 7719 0 0 F 43 * * * 7061 761 * 4274 6902 * 4426 4681 * * * 5753 5903 5154 5506 4791 2885 43 0 * * * * * * 7719 0 0 I 44 4416 5532 * * 5417 6664 * 1807 * 3832 6203 * * * * * * 919 * * 44 0 * * * * * * 7719 0 0 Q 45 6939 * 4211 1905 5475 4621 5042 6124 4533 5655 5170 5209 * 3474 3633 4267 3014 3751 * 5350 45 0 * * * * * * 7719 0 0 F 46 * 6611 * * 904 * 5633 * * 5085 3848 * * * * * * 6665 * 1614 46 0 * * * * * * 7719 0 0 D 47 3091 6799 3436 2254 5333 4536 * * 3657 4634 6010 5716 5628 4044 3760 3335 4001 6053 * 5766 47 0 * * * * * * 7719 0 0 N 48 5898 6468 1941 4073 * 6583 5733 * 4538 * * 2668 * 7445 5216 2186 2710 7294 * 6533 48 0 * * * * * * 7719 0 0 P 49 4091 * 4948 2335 5311 * 4497 4212 3791 5183 * 5822 2569 5135 3753 4348 4763 3671 * 4867 49 0 * * * * * * 7719 0 0 Q 50 3787 6886 3399 1530 * 4506 * 7014 4289 5771 6046 7012 5201 3424 3216 3913 5147 * * 6468 50 0 * * * * * * 7719 0 0 S 51 2865 * 1797 3143 * 4055 5233 5300 * 6950 5844 5117 * 4203 * 2654 3868 6183 * * 51 0 * * * * * * 7719 0 0 V 52 634 4594 * * 6618 6443 * * * 5992 5529 * 6849 5483 5913 4778 4731 3422 * 4633 52 0 * * * * * * 7719 0 0 R 53 3512 * 3559 2549 6012 5141 5763 5930 3944 3950 5129 4998 * 2733 3666 3768 4435 4659 * * 53 0 * * * * * * 7719 0 0 D 54 3050 * 5390 4933 6240 5829 * 6754 1848 3929 5431 4234 * 3374 2796 4335 4331 6032 * 6976 54 29 6949 6443 2000 415 * * 7719 1000 0 A 55 391 3911 * * * * * 7168 * 5117 5361 * * * * 6237 6340 3555 * * 55 57 5242 6331 1997 416 * 0 7698 2357 1000 I 56 4880 5971 * * 5413 6454 * 2229 4396 1779 3102 * 6813 6521 5531 * 7212 2586 * 4970 56 0 * * * * 0 * 7700 0 1780 E 57 3011 * 4555 2870 6162 5234 5681 5664 2264 6240 5626 4503 * 3374 2998 4130 4961 * * 5626 57 45 5016 * 810 1219 * * 7719 2250 0 E 58 2501 7104 4873 2811 5257 4716 3781 5180 3517 4026 5074 4860 6443 4378 4442 3582 5022 5372 * 5800 58 0 * * * * * * 7719 0 0 S 59 6087 5816 5022 4314 4659 4859 5602 4826 4796 1519 2776 3796 4723 * 6246 5637 4910 * * 4339 59 40 5660 7063 960 1041 * * 7719 1815 0 Q 60 5645 * 2713 4765 * 3804 2911 * 6206 * * 1631 5074 3359 5773 4004 6101 5957 * 6443 60 29 5631 * 0 * * 0 7718 1673 1000 E 61 4880 * 5468 5501 6819 1339 3459 5331 3915 5467 * 2612 * 4522 5313 5237 4776 6961 * 6769 61 102 3873 * 1028 972 0 * 7718 3855 1000 M 62 4511 * 5965 3900 3318 7454 5690 4075 2473 5698 3109 * 6675 4092 4415 4480 3451 3620 * 4632 62 168 3183 * 225 2790 * * 7719 4776 0 N 63 * * 6014 3387 4532 * 6644 2084 4047 2241 4288 5793 4748 4956 5885 6274 4170 3975 * 4641 63 74 4313 * 412 2008 * * 7719 3033 0 F 64 5890 4297 3155 5976 2537 6605 5957 3574 5533 2637 3967 3727 * 6914 5773 5313 * 3779 5234 4367 64 405 2030 * 541 1677 * * 7716 6182 0 G 65 5463 * 4451 5838 * 620 4355 * 4701 * 6914 3300 * * 4907 5316 6970 * * * 65 60 4622 * 0 * * * 7716 3219 0 K 66 4757 7006 3829 4442 * 3762 5163 6609 2844 6509 * 3223 * 5911 1887 3396 4104 5086 * * 66 35 6468 6324 0 * * * 7716 1000 0 K 67 5667 * 6092 4365 6608 * 5774 5047 2143 5960 4822 4895 3975 4012 1825 5925 4187 4549 * 5325 67 102 4367 5670 716 1354 0 * 7715 3156 1110 L 68 * 5609 * * * * * 1509 * 1282 3911 * 5754 6604 * * 6823 3149 * * 68 10 * 7134 * * 0 * 7736 0 1737 I 69 * * 4175 5869 7126 6703 3439 3371 2699 4260 6641 5045 * 4007 2273 4675 3837 3889 * 5074 69 10 7133 * 0 * 0 * 7731 1000 1000 L 70 4762 5308 * * 5341 * * 1999 * 2663 5550 * * * * * 6532 1080 * * 70 0 * * * * * * 7739 0 0 E 71 5148 5214 3382 1950 * 5200 * * 3524 * 5390 3637 * 3035 3873 3409 4098 5753 * 6597 71 0 * * * * * * 7642 0 0 V 72 6839 6639 * 5500 2518 * * 3512 4224 2692 4347 * 4223 * 5388 * 6465 2786 3874 2862 72 0 * * * * * * 7613 0 0 S 73 1292 6756 5162 6187 * 4608 * * 4213 6420 * 5565 5683 6358 5529 1825 4743 4639 * * 73 0 * * * * * * 7570 0 0 S 74 5393 6418 5494 5093 6925 6534 4199 4542 1598 5329 * 4542 6531 4365 2364 3920 4116 5560 * * 74 0 * * * * * * 7532 0 0 S 75 3515 * 4475 4011 * 2807 5172 * 6359 * * 5344 4276 6666 6158 1448 2820 6108 * * 75 0 * * * * * * 7321 0 0 N 76 4478 * 3844 * * 4301 * * 3846 * * 1143 * * 4400 3953 2855 4002 * * 76 0 * * * * * * 6946 0 0 A 77 1416 * * * * * * * * * * * * * * 890 3546 * * * 77 0 * * 0 * * * 5733 0 0 //