HHsearch 1.5 NAME c2xdjF_ FAM FILE c2xdjF_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2xdjF_.a3m DATE Sat Sep 18 13:04:10 2010 LENG 62 match states, 62 columns in multiple alignment FILT 68 out of 72 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.7 EVD 0.4905 1.0877 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C >sa_dssp EEEEEDEDEEEDDEDEDEEEDDDEDEEDEDEDEEDDEEDDEEEEDEEDDDDDEEDEEEEE-E >ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >ss_conf 99999999999999612999999999999999999999999999999999999999983049 >Consensus slexRlxxlErxlxsxxqxxxelqxqixxLqxEvxxLRGqiExxxxelxxlxxrQrdxYxDL >c2xdjF_ SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI >UniRef50_Q3JER6(37-96:257) TPR repeat protein n=2 Tax=Nitrosococcus oceani RepID=Q3JER6_NITOC E=5e-05 s/c=0.81 id=21% cov=98% ALEQRLQQIERIIEGQGLS--ELLSQMAELEANVRRLQGESEELRYEMDNLKRQQRELYVDL >UniRef50_A6FES6(36-97:252) Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FES6_9GAMM E=4e-11 s/c=1.11 id=32% cov=102% SVEQRLTRIENILQARTRSQLETQQRLDQLSIELMNLQGAIEESNLEQSKITQRQRDILNDI >UniRef50_Q484P4(39-100:263) TPR domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484P4_COLP3 E=5e-11 s/c=1.10 id=27% cov=102% ALTEQLTTLSRKLDSRNKAQVNIQRQLDLLQNEVNELRGVTELHTHKLSQVLERQRELYKEI >UniRef50_A6GSR6(46-102:248) Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GSR6_9BURK E=1e-06 s/c=0.95 id=26% cov=94% -LEDRVARME----SANQGQLSLAQSLSEKDREIARLRGDLEVANNNIRKLQEDNRLLYTNL >UniRef50_B6J345(72-131:305) Tol system periplasmic component n=9 Tax=Coxiella burnetii RepID=B6J345_COXB2 E=2e-06 s/c=0.89 id=28% cov=98% TVTQRLARLEQQLN--NIINMNLPQQISDLQQQLAQVRGQLQVQERNLELLNNQQRSFYRDL >UniRef50_C5V6K2(35-95:246) Tol-pal system protein YbgF n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V6K2_9PROT E=9e-11 s/c=1.11 id=27% cov=100% -VEARVLVLEEQDKLQTKSIFDLQGQIDMLNGELRKLRGQNEETAHGLQDAEKREKDFYVDL >UniRef50_C6MHJ5(41-99:300) Tol-pal system protein YbgF n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MHJ5_9PROT E=2e-10 s/c=1.13 id=22% cov=97% -MEARIAKMDQALNS--EALLQLYTQVETLGLELGKLNGQIEMLSNDNALLQKRQRDFYIDL >UniRef50_A8BUK9(4165-4212:5550) Dynein heavy chain, putative n=12 Tax=cellular organisms RepID=A8BUK9_GIALA E=2e-06 s/c=1.11 id=31% cov=77% ----RVAKLEEQLEQSSKDLAQLQSKILSLEEDSKRLRDQLQAAQNEQQEL----------- >UniRef50_B4ST25(27-87:272) Tol-pal system protein YbgF n=20 Tax=Xanthomonadaceae RepID=B4ST25_STRM5 E=2e-06 s/c=0.88 id=23% cov=100% SLADRVGAIEQQMYNNSANQ-DLLNQINQLRQQVTSLQASIEQLQHDNAQLKQSAQDQYLDL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 1755 * * * * * * * * * * * * * * 838 2793 * * * 1 0 * * * * * * 4184 0 0 V 2 * * * * * * 5173 3398 * 873 3882 * * * * 5424 4385 2378 * * 2 0 * * * * * * 4657 0 0 E 3 4503 * 2419 732 * * * * * * * * * 5258 * 4298 4099 4991 * * 3 0 * * * * * * 4657 0 0 D 4 2707 * 2090 2825 * 4531 * * 3950 * * * * 2649 4305 3343 * 5247 * 5158 4 0 * * * * * * 4657 0 0 R 5 * * * * * * * * 5094 * * * * 3973 141 * * * * * 5 0 * * * * * * 4821 0 0 V 6 * * * * * * * 2106 * 1149 4803 * * * * * * 1832 * * 6 0 * * * * * * 4706 0 0 T 7 2025 * 4395 2773 * 3623 * * * 3703 * * * 4053 * 4033 2074 4518 * * 7 0 * * * * * * 4706 0 0 Q 8 4166 * 5369 * * * 4963 * 1880 4464 * * * 3446 1781 4657 3364 4277 * * 8 0 * * * * * * 4803 0 0 L 9 * * * * 4892 * * 2414 * 790 4140 * * * * 5623 4209 3852 * * 9 0 * * * * * * 4803 0 0 E 10 4892 * 5302 210 * * * * * * * 4705 * 5623 * 5822 * * * * 10 46 * 4995 * * * * 4803 0 0 R 11 4508 * * 3125 * 5395 5113 * 5256 * * 3886 * 2824 1101 5836 3836 * * * 11 60 * 4626 * * * 0 4763 0 1000 I 12 3083 * 5590 * * * * 2152 3037 2637 3756 * * 2888 4578 * 4622 4010 * * 12 0 * * * * 1539 609 4662 0 1929 S 13 * * 4864 * 3185 * * 4033 * 988 3310 * * * * 3475 5643 3650 * * 13 168 * 3187 * * 952 1050 4782 0 1581 N 14 5444 * 2789 2065 * 4380 * * 2265 * * 2528 * 3699 * 4547 * * * 4504 14 92 * 4022 * * 2353 314 4699 0 2582 A 15 2243 * * * * 3303 * 5122 * 4958 * 3053 * 3758 * 1282 5581 * * * 15 69 * 4424 * * 275 2528 4740 0 2697 H 16 3308 * * 5602 * * 4051 * 5106 * 5354 4025 * 2408 1556 2517 * * * * 16 91 5905 4486 1000 1000 1604 576 4854 1000 2128 S 17 5627 * 5737 * * 2290 * * * 6164 * 1679 5866 4797 * 2306 2514 * * * 17 106 5737 4255 2807 222 1915 444 4888 1000 2486 Q 18 4211 * 5611 3464 5974 4064 * 4862 3438 4107 * * * 1346 2823 4646 * * * * 18 0 * * * * 886 1124 4879 0 2638 L 19 2772 * 5179 * * 3018 * 4038 4285 2687 3831 3366 * 4665 * 2392 * 4719 * * 19 55 * 4742 * * 0 * 4916 0 1732 L 20 5759 * 5935 5099 6114 * * 5420 * 1472 3568 5099 5086 1551 * * 5751 4838 * * 20 48 * 4936 * * * 0 4894 0 1544 T 21 2953 * * * 4621 3850 4948 3534 * 1372 4450 4631 * 4748 * * 4424 3908 * 5711 21 0 * * * * 0 * 4828 0 2009 Q 22 5146 * 2353 1490 * * * 5194 5243 5766 * 3860 * 2589 4381 4566 5467 * * * 22 0 * * * * * * 4887 0 0 L 23 * * * * * * * 3440 * 846 1996 * * * * * 5260 4246 * 5495 23 0 * * * * * * 4890 0 0 Q 24 3165 * * 5500 4815 * 4930 4501 * 3124 4277 5624 5117 1164 * 6243 6314 5233 * 4653 24 0 * * * * * * 4887 0 0 Q 25 6396 * * 5127 * 4961 * 5987 * * 4411 1903 * 2117 3170 2651 4313 * * 4438 25 30 * 5608 * * * * 4680 0 0 Q 26 5390 * 5120 4443 * 6012 * * 3358 * 5141 * * 671 3491 5077 6206 * * * 26 31 * 5562 * * * 0 4662 0 1547 L 27 4822 * 6409 * 6131 * * 1535 * 1507 3751 4558 * * * * * 3000 * * 27 0 * * * * 1227 804 4652 0 1624 S 28 4715 * 2240 1676 * * 4895 * 5835 5228 * 3796 * 3093 5948 3273 4304 * * * 28 0 * * * * 953 1049 4644 0 1072 D 29 2864 * 3463 3571 * 5767 * 5758 * 4002 4867 5486 * 1976 3176 3459 3714 * * * 29 0 * * * * 0 * 4654 0 1000 N 30 6021 * * * * * * 5923 5086 454 2986 3856 * 6215 * * * * * * 30 0 * * * * * * 4660 0 0 Q 31 5432 * 5086 3389 * 5926 5516 * 2588 * * 3793 * 1251 3761 3876 6248 * * * 31 0 * * * * * * 4660 0 0 S 32 3080 * 3959 3488 * 4271 * 5385 4692 4722 6498 3380 * 1870 3204 3764 6237 * * * 32 0 * * * * * * 4660 0 0 D 33 * * 2595 534 * * * * * * * 5643 * 3523 5426 * 6224 * * * 33 0 * * * * * * 4660 0 0 I 34 * * * * * * * 2188 * 2002 4872 4347 * 6251 * 5231 5773 1360 * * 34 0 * * * * * * 4660 0 0 D 35 2055 * 3679 4901 * 4810 * * 4709 6494 4023 4440 * 3139 2249 3279 5144 * * * 35 0 * * * * * * 4660 0 0 S 36 5532 * 4295 1969 * * * * 2885 * * 4123 * 3813 1858 3381 4787 * * * 36 0 * * * * * * 4660 0 0 L 37 * * * * * * * 3542 * 226 5785 * * * * * 5802 5420 * * 37 0 * * * * * * 4660 0 0 R 38 * * * * * * 6005 * 4143 * * 4047 * 3352 378 * * * * * 38 0 * * * * * * 4660 0 0 G 39 5144 * 5231 * * 133 * * * * * * * * * 4901 * * * * 39 0 * * * * * * 4660 0 0 Q 40 4376 * 3383 3104 * 5264 * 4707 5702 4029 5785 * * 1140 5963 4700 4897 4838 * * 40 0 * * * * * * 4660 0 0 I 41 5853 * * * * * * 1566 * 2297 5264 3848 * * * 5643 4179 1885 * * 41 0 * * * * * * 4660 0 0 Q 42 * * * 206 * * * * * * * * * 2913 * * * * * * 42 0 * * * * * * 4660 0 0 E 43 4722 * 5418 1806 4901 * * 6348 4634 4318 5926 * * 2840 4331 5154 4721 2030 * * 43 0 * * * * * * 4660 0 0 N 44 3871 * * * 4670 * 4935 * * 1632 4822 2911 * 1820 * 4753 5724 5085 * * 44 0 * * * * * * 4660 0 0 Q 45 3057 * 4783 3621 * 4723 * * * 6005 * 2484 * 2103 3442 3418 3580 5151 * * 45 0 * * * * * * 4660 0 0 Y 46 * * 5702 * 3655 * 1676 * * 5385 * 2506 * * 3785 * * * * 1662 46 0 * * * * * * 4660 0 0 Q 47 * * 3438 1290 * 5724 * * 3482 * * 3268 * 2048 4942 6364 * * * * 47 0 * * * * * * 4660 0 0 L 48 * * * * 5516 * * 2329 * 1053 4533 3741 * 4306 * * * 2960 * * 48 0 * * * * * * 4660 0 0 N 49 4102 * 3243 1829 * * 4901 * 3805 * * 3791 * 2620 3118 3327 * * * * 49 0 * * * * * * 4660 0 0 Q 50 * * 4958 3746 * * * * 2606 3772 * 3716 * 1886 3241 4496 2651 * * * 50 0 * * * * * * 4660 0 0 V 51 3451 * * * * * * 3142 * 1001 3243 * * 5886 * 4919 4293 3491 * * 51 0 * * * * * * 4660 0 0 V 52 5846 * * 3634 * * * 4240 1719 3020 * 4671 * 2005 4236 * 4027 5691 * * 52 0 * * * * * * 4612 0 0 E 53 4223 * 6227 2039 * 5474 * * 1837 * * 4300 * 2136 4118 4935 5727 * * * 53 0 * * * * * * 4612 0 0 R 54 * * 5047 6056 * * * * 5911 4922 * 4403 * 2085 785 4585 * * * * 54 0 * * * * * * 4613 0 0 Q 55 5015 * * 4154 * 6148 * * * * * 5047 * 299 * 4170 * * * * 55 0 * * * * * * 4613 0 0 K 56 * * * * * * * * 2195 4274 5386 3644 * 3290 1022 5837 * 6159 * * 56 0 * * * * * * 4606 0 0 Q 57 4445 * 957 1877 * * * 5408 * 5021 * 5212 * 4049 * 5322 * * * * 57 0 * * * * * * 4606 0 0 I 58 * * 6554 * 2267 * 5114 3484 * 1388 4946 5868 * 3981 2835 * * * * 5140 58 0 * * * * * * 4564 0 0 L 59 * * * * 5177 * * * * 3843 * * * * * * * * * 148 59 0 * * * * * * 4564 0 0 L 60 3767 * * 5977 * * * 3195 4963 1753 4214 4965 * 3557 4150 * 3649 2592 * * 60 0 * * * * * * 4281 0 0 Q 61 * * 413 2680 * * * * * * * 4606 * 4276 * * * * * * 61 0 * * * * * * 4269 0 0 I 62 * * * * * * * 2018 * 486 * * * * * * * 4681 * * 62 0 * * 0 * * * 4269 0 0 //