HHsearch 1.5 NAME c2xdjC_ FAM FILE c2xdjC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2xdjC_.a3m DATE Thu Jan 10 03:47:41 2013 LENG 67 match states, 67 columns in multiple alignment FILT 67 out of 71 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.6 EVD 0.4654 0.1880 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC >sa_dssp EEEEEDDDEEEDDEDEDDDEDDDEEEECEDEDDDDDEDCEEDEEDEDEDEDDEEEEEDEEEDEEEEE >ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9899999999999511358999999999999999999999999999999999999999999973259 >Consensus slexRlxxlErxlxsxxqxxxelxxqixxLqxEvxxLRGxiExxxxxlxxlxxrQrdxYxDLDxxxx >c2xdjC_ SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSS >UniRef50_Q484P4(39-102:263) TPR domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484P4_COLP3 E=1e-08 s/c=0.96 id=28% cov=97% ALTEQLTTLSRKLDSRNKAQVNIQRQLDLLQNEVNELRGVTELHTHKLSQVLERQRELYKEIDR--- >UniRef50_C6P5B6(33-102:251) Tol-pal system protein YbgF n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P5B6_9PROT E=9e-12 s/c=1.02 id=25% cov=96% -LEVRIVKLEQALASSDadkeqtiRSMLDMQMQMEALNTELRKLRGQNEEFAHELQDAEKRQKDFYVDLDT--- >UniRef50_A4SVI0(39-99:243) Tetratricopeptide TPR_2 repeat protein n=2 Tax=Polynucleobacter necessarius RepID=A4SVI0_POLSQ E=1e-07 s/c=0.95 id=19% cov=93% --EARKAILD-LRKSLATTQLELQGEIDKLKTENAELRGKLENLEKQGEDISSSQKTYYQDLDT--- >UniRef50_Q3JER6(37-98:257) TPR repeat protein n=2 Tax=Nitrosococcus oceani RepID=Q3JER6_NITOC E=6e-09 s/c=1.00 id=25% cov=94% ALEQRLQQIERIIE--GQGLSELLSQMAELEANVRRLQGESEELRYEMDNLKRQQRELYVDLDR--- >UniRef50_B4ST25(27-89:272) Tol-pal system protein YbgF n=20 Tax=Xanthomonadaceae RepID=B4ST25_STRM5 E=2e-06 s/c=0.85 id=25% cov=96% SLADRVGAIEQQMYNNSANQ-DLLNQINQLRQQVTSLQASIEQLQHDNAQLKQSAQDQYLDLDS--- >UniRef50_B6J345(72-132:305) Tol system periplasmic component n=9 Tax=Coxiella burnetii RepID=B6J345_COXB2 E=6e-06 s/c=0.85 id=29% cov=93% TVTQRLARLEQQLN--NIINMNLPQQISDLQQQLAQVRGQLQVQERNLELLNNQQRSFYRDLD---- >UniRef50_A6FES6(36-102:252) Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FES6_9GAMM E=2e-10 s/c=0.99 id=29% cov=101% SVEQRLTRIENILQARTRSQLETQQRLDQLSIELMNLQGAIEESNLEQSKITQRQRDILNDIERIRT >UniRef50_C0VL91(28-90:269) Tol-pal system protein YbgF n=2 Tax=Acinetobacter RepID=C0VL91_9GAMM E=2e-06 s/c=0.85 id=19% cov=96% ALSQQTASSSNTTNVGSNLNWELIQKNQRLEEEVRKLRGQLEEHDNAIEQLKKELTNRYTDLD---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 1718 * * * * * * * * * * * * * * 808 3002 * * * 1 0 * * * * * * 4332 0 0 V 2 * * * * * * 5163 3538 * 806 4061 * * * * 5131 4427 2482 * * 2 0 * * * * * * 4742 0 0 E 3 4829 * 2537 756 * * * * * * * * * 5440 * 3387 4351 4931 * * 3 0 * * * * * * 4813 0 0 D 4 2608 * 2262 2888 * 5372 * * 4038 * * * * 2173 4343 3476 * 5477 * 5382 4 0 * * * * * * 4813 0 0 R 5 * * * * * * * * 4958 * * * * 3320 205 * * * * * 5 0 * * * * * * 4839 0 0 V 6 * * * * * * * 2372 4819 1166 5159 * * * * * 4596 1963 * * 6 0 * * * * * * 4857 0 0 T 7 1860 * 4441 2866 * 4139 * * 5494 3858 * * * 4342 * 4170 2000 4703 * * 7 0 * * * * * * 4857 0 0 Q 8 4380 * 5474 * * * 5276 3868 2108 4603 * * * 3526 1955 3629 3450 4475 * * 8 0 * * * * * * 4923 0 0 L 9 * * * * 4903 * * 2478 * 822 4267 * * * * 4042 4492 3957 * * 9 0 * * * * * * 4923 0 0 E 10 4903 * 4128 327 * * * * * * * 4817 * 5484 * 4195 * * * * 10 97 * 3947 * * * * 4923 0 0 R 11 4509 * * 3708 * 5516 5231 * 5445 * * 3159 * 2950 1056 5865 3863 * * * 11 54 * 4754 * * 930 1074 4807 0 1586 I 12 3168 * 5716 * * * * 2290 3203 2445 3802 * * 3034 4819 * 3534 4122 * * 12 0 * * * * 1540 608 4800 0 1906 S 13 * * 5187 * 3391 * * 3311 * 1205 3509 * * * 4908 3986 4164 3284 * * 13 115 * 3708 * * 953 1049 4884 0 1569 N 14 4583 * 2933 2418 * 4584 * * 2270 * * 2379 * 3790 * 4068 4880 * * 4918 14 169 * 3175 * * 2099 384 4837 0 2332 A 15 2207 * * * * 3475 * * * 5066 * 3375 * 3893 * 1217 4900 4787 * * 15 123 * 3612 * * 1249 788 4826 0 2959 H 16 4978 * * 5631 * 4107 4046 * 5134 3683 5484 3656 * 3463 1441 2773 5951 * * * 16 47 * 4961 * * 735 1325 4852 0 3109 S 17 4368 * 5928 * * 2663 * * * 6226 * 1492 5989 4532 * 2516 2519 * * * 17 95 5928 4407 2807 222 1048 953 4867 1000 2463 Q 18 3867 * 5681 3920 5816 5796 * 5251 3727 5976 * 4498 4980 1239 2806 5904 4909 * * * 18 0 * * * * 1143 870 4898 0 2373 L 19 2792 * * * * 2801 * 4251 5026 2197 4196 3305 * 4920 * 2823 4427 4870 * * 19 28 * 5722 * * 0 * 4923 0 1716 L 20 * * 5378 * 5845 5629 * 5662 * 1517 3603 3977 5322 1504 * * 5931 5083 * * 20 38 * 5248 * * 0 * 4866 0 1000 T 21 3590 * * * 4545 4141 5127 3078 * 1614 4266 4749 * 4529 * 4677 4661 3761 4693 5630 21 42 * 5109 * * 0 * 4836 0 1000 Q 22 5767 * 2293 1260 * * * 5151 5351 * * 3727 * 3027 4285 4690 5710 * * * 22 0 * * * * * 0 4802 0 1000 L 23 6141 * * * * * * 3448 * 833 2109 * * * * * 5143 4235 * 5686 23 0 * * * * * 0 4802 0 1000 Q 24 3253 * * 5686 4990 * 5073 3973 * 2915 3948 5771 5315 1242 * 6232 6298 5293 * 4803 24 0 * * * * * 0 4802 0 1000 Q 25 6083 * * 4790 * 4229 * 5967 * 5887 5123 1994 * 1973 3149 2954 4416 * * 4655 25 0 * * * * 0 * 4687 0 1000 Q 26 5547 * 5317 3926 * 5572 * * 3480 * 5380 * * 701 3338 5249 6293 * * * 26 0 * * * * * * 4613 0 0 L 27 4794 * 6630 * 6361 * * 1526 * 1609 3642 4048 * * * 6207 * 3150 * * 27 0 * * * * * * 4613 0 0 S 28 4913 * 1873 1863 * * 4924 * * * * 3812 * 2714 5914 3363 4364 * * * 28 0 * * * * * * 4613 0 0 D 29 2962 * 3318 3686 * 5942 * 5826 5233 4065 4640 5605 * 2012 3143 3927 3541 * * * 29 0 * * * * * * 4614 0 0 N 30 5850 * * * * * * 6062 5251 425 2932 4231 * 6375 * * * * * * 30 0 * * * * * * 4614 0 0 Q 31 5494 * 5251 3404 * 6064 5552 * 2476 * * 3760 * 1246 3999 3821 6332 * * * 31 0 * * * * * * 4614 0 0 S 32 3237 * 3963 3776 * 4367 * 5188 4687 4854 6499 3120 * 1811 3454 3882 4744 * * * 32 0 * * * * * * 4614 0 0 D 33 * * 2781 527 * * * * * * * 5754 * 3217 5556 * 6224 * * * 33 0 * * * * * * 4614 0 0 I 34 * * * * * * * 2251 * 2125 3963 3712 * 6301 * * 5826 1359 * * 34 0 * * * * * * 4614 0 0 D 35 2007 * 3642 4925 * 5062 * * 6388 5560 4049 4486 * 3224 2140 3180 5276 * * * 35 0 * * * * * * 4614 0 0 S 36 5579 * 4405 1800 * * * 5142 2904 * * 4051 * 4197 2117 3403 4543 * * * 36 0 * * * * * * 4614 0 0 L 37 * * * * 5142 * * 3388 * 278 5942 * * * * * 6050 5632 * * 37 0 * * * * * * 4614 0 0 R 38 * * * * * * 6133 * 4045 * * 4137 * 3041 421 * * * * * 38 0 * * * * * * 4614 0 0 G 39 5276 * * * * 87 * * * * * * * * * 4925 * * * * 39 0 * * * * * * 4614 0 0 Q 40 4296 * 3409 3041 * 5208 * 4446 3838 4177 5942 * * 1337 5569 4814 5044 4781 * * 40 0 * * * * * * 4614 0 0 I 41 6052 * * * * * * 1689 * 2014 5208 4041 * * * 5754 3841 1993 * * 41 0 * * * * * * 4614 0 0 Q 42 * * * 160 * * * * * * * * * 3253 * * * * * * 42 0 * * * * * * 4614 0 0 E 43 4659 * 5564 1795 4925 * * 5973 4828 4458 6064 5233 * 2868 4389 5216 4579 2142 * * 43 0 * * * * * * 4614 0 0 N 44 4567 * * * 4726 * 4377 * * 1679 4909 2905 * 1701 * 4649 6028 5054 * * 44 0 * * * * * * 4614 0 0 Q 45 3119 * 4351 3307 * 4914 * * * 6133 * 2350 * 2140 3900 3371 3727 5310 * * 45 0 * * * * * * 4614 0 0 Y 46 * * 6060 * 3809 * 1582 * 5233 5188 * 2708 * * 3915 * * * * 1707 46 0 * * * * * * 4614 0 0 Q 47 4511 * 3593 1448 * 6028 * * 3388 * * 3325 * 1973 5025 6534 * * * * 47 0 * * * * * * 4614 0 0 L 48 * * * * 5552 5233 * 2171 * 1147 4590 3924 * 5188 * * * 2798 * * 48 0 * * * * * * 4614 0 0 N 49 4246 * 3361 1708 * * 4925 * 3387 * * 3612 * 2940 3326 3270 * * * * 49 0 * * * * * * 4614 0 0 Q 50 * * 4247 4370 * * * * 2587 3403 * 3735 * 1839 3325 4709 2782 * * * 50 0 * * * * * * 4614 0 0 V 51 3547 * * * * * * 2762 * 1077 3189 * * * * 5018 4227 3333 * * 51 0 * * * * * * 4614 0 0 V 52 6052 * * 3310 * * * 4315 1850 2809 * 4609 * 2176 4471 5233 4071 5620 * * 52 0 * * * * * * 4614 0 0 E 53 4241 * 4681 2114 * 5552 * * 1893 * * 4405 * 2159 4512 4207 5826 * * * 53 0 * * * * * * 4614 0 0 R 54 * * 4610 5218 * * * * 6143 5943 * 4570 * 2168 798 4014 * * * * 54 0 * * * * * * 4614 0 0 Q 55 5276 * * 4363 * 6413 * 5142 * 5047 * 5251 * 329 * 4921 * * * * 55 0 * * * * * * 4614 0 0 K 56 6042 * * * * * * * 2201 4350 5366 3785 * 3790 983 6048 5959 6388 * * 56 0 * * * * * * 4609 0 0 Q 57 4658 * 1088 2065 * * 5134 5553 * 5236 * 4097 * 3867 * 5576 5218 * * * 57 0 * * * * * * 4609 0 0 I 58 * * 6183 * 2602 * 5305 3499 * 1391 5173 5847 * 3374 2896 * * * * 4307 58 0 * * * * * * 4526 0 0 L 59 * * * * 4759 * * * * 3727 * * * * * * * * * 172 59 0 * * * * * * 4526 0 0 L 60 3839 * * 5528 * * * 3486 5411 2161 4366 4168 * 2975 3972 4297 3278 3024 * * 60 0 * * * * * * 4526 0 0 Q 61 4305 * 524 2915 * * * * * 5162 * 4377 * 4459 * * * * * * 61 0 * * * * * * 4526 0 0 I 62 * * * * 5517 * * 2231 * 603 * * * * * 5946 6039 3727 * * 62 0 * * * * * * 4526 0 0 D 63 5528 * 98 4498 * * * * * * * * * * * * * * * * 63 0 * * * * * * 4526 0 0 S 64 4940 * * * * * * * 2375 * * 4965 * * 1540 2188 2479 * * * 64 0 * * * * * * 4063 0 0 L 65 * * * * * * * 1844 * 1065 * * * * * * * 2039 * * 65 0 * * * * * * 2597 0 0 S 66 2665 * * * * * * * * * * * * * 1464 1669 2596 * * * 66 0 * * * * * * 2503 0 0 S 67 * * * * * * * * * * * 2298 * * * 2495 692 * * * 67 0 * * 0 * * * 2351 0 0 //