HHsearch 1.5 NAME c2xcmE_ FAM FILE c2xcmE_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2xcmE_.a3m DATE Sat Aug 28 21:57:15 2010 LENG 74 match states, 74 columns in multiple alignment FILT 86 out of 90 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.4413 1.1811 SEQ >ss_dssp CCCCCTTSCEECCSBTTCCEECSTTCCTTCEEEBCCCEEEETTEEEETTTTEECSSHHHHTTCCCCEEECCCCC >sa_dssp EEEEDDDDECDAECDECEEEBDDEEBDEDCADBBDCDCCEEEEDCABEDCEDDCEEDEDBEECEDDDECEBCCE >ss_pred CCEEECCCCCEEEECCCCCEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC >ss_conf 93030678878782377866557888877713758773125687340236870248889731888855126779 >Consensus xxxxxixxxxxCxnxGCgxxyxxxxnxxxxCxyHpGxpvFhegxKxWsCCxkxxxdfxeFlxixgCxxGxHsxx >c2xcmE_ AAVIDINQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSSS >UniRef50_A0DEC9(1177-1257:1390) Chromosome undetermined scaffold_48, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0DEC9_PARTE E=0.0002 s/c=0.58 id=33% cov=81% ------KELRICTNWACGKQYREIENrKKNMCRSHPGVFDFgHTATKIqeaieeykqekgskilwkphWTCCRK---SWNE----PGCLLSKHS-- >UniRef50_Q4QCL9(228-294:296) Putative uncharacterized protein n=2 Tax=Leishmania RepID=Q4QCL9_LEIMA E=6e-16 s/c=1.27 id=36% cov=91% -----VDGKARCRNFGCAKEFVVAENTKSSCRYHKEGPVFWDTYKYWKCCpDKKCLEFDDFVKVPGCCEGAH--- >UniRef50_Q9UKP3(143-209:347) Integrin beta-1-binding protein 2 n=16 Tax=Theria RepID=ITBP2_HUMAN E=6e-20 s/c=1.47 id=31% cov=92% -----IRTGSSCQNPGCDAVYQGPESDATPCTYHPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRHD-- >UniRef50_D0NGD2(381-442:449) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NGD2_PHYIN E=2e-09 s/c=1.03 id=34% cov=78% -----MHKSRRCKN--CNETFTNKSNTSLSCSFHPGRFVARkyplEGYQ-WSCCQKRE------LSSRPCKFaGRH--- >UniRef50_A9V3Y4(670-734:1426) Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis RepID=A9V3Y4_MONBE E=3e-09 s/c=0.97 id=24% cov=84% -AVLQPEAPVKCVQ--CEELYMPSQNTRGSCRYHQ--------YPDWgsvrACCGSTTDPWRK-KSQLGCQVGPHQS- >UniRef50_A0BSC1(193-259:262) Chromosome undetermined scaffold_124, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0BSC1_PARTE E=9e-06 s/c=0.77 id=30% cov=59% ---------QKCSKKECQQchlLYNPRTNYIDSCLFHSGKLKFYSCKKcgaddYYTCCNK---------------------- >UniRef50_A8QDS7(135-207:262) Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8QDS7_MALGO E=1e-14 s/c=1.11 id=33% cov=95% --LVKVSAGTTCRRTGCGyvvpEDIHERDRTKETCKFHKGTPIFHEGSKGYTCCKRRVLHFDDFLQIEPCSTAEH--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 1000 * * * * * * * * * * * * * * 1000 * * * * 1 0 * * * * * * 1184 0 0 A 2 366 * * * * * * * 2160 * * * * * * * * * * * 2 0 * * * * * * 2022 0 0 V 3 * * * * * * * * * 1201 * * * * * * 2895 1216 * * 3 0 * * * * * * 2554 0 0 I 4 * * * * 2879 * * 1362 * 2389 * * * * * * * 1815 * * 4 0 * * * * * * 3112 0 0 D 5 * * 1384 1869 * * * * 4177 * * * 4330 2951 * 3201 * * * * 5 0 * * * * * * 3489 0 0 I 6 * * * * * * * 992 * 3262 3969 * 3498 * * * * 2056 * * 6 0 * * * * * * 3834 0 0 N 7 4381 * 2439 3229 * 4034 4070 * 2535 * * 2974 4302 3728 4906 3624 * * * * 7 0 * * * * * * 4036 0 0 Q 8 2612 * 5466 2239 * 4093 * 3882 3341 * * * 3565 4126 * * 3128 3048 * * 8 54 * 4762 * * * * 4037 0 0 P 9 * * * 4009 * 1186 * 4119 3753 3475 * 5577 2953 * 4570 4904 * * 5776 4922 9 0 * * * * 0 * 3888 0 1000 Q 10 3377 * * 6043 * * * * 4308 4956 4019 * * 2374 2409 3832 2050 4284 * * 10 0 * * * * * * 4165 0 0 V 11 5212 * * * * * 6617 2444 2870 3497 * 5250 3940 5520 3819 3656 3058 2805 * 5206 11 0 * * * * * * 4191 0 0 C 12 * 0 * * * * * * * * * * * * * * * * * * 12 0 * * * * * * 4211 0 0 K 13 * 6178 * 5450 * * * 4710 1491 6199 * * * 3856 2701 5155 2927 3617 * 3446 13 0 * * * * * * 4211 0 0 N 14 * * * * * * 2688 * 5760 * * 834 * 5301 2058 * * * * * 14 168 * 3184 * * * * 4211 0 0 K 15 4776 * * * 3720 5669 4872 4693 2318 4904 * 3942 3895 4060 3261 6052 3777 6050 3172 4307 15 0 * * * * * 0 4092 0 2334 G 16 3504 4937 * 5374 * 302 * * * * * * * * * 4925 6468 * * * 16 0 * * * * 0 * 4092 0 2334 C 17 * 0 * * * * * * * * * * * * * * * * * * 17 0 * * * * * * 4211 0 0 G 18 5613 * 4417 4410 * 1028 * 5952 3447 5722 * 2997 * 3611 5390 5772 5684 * * * 18 25 5865 * 2000 415 * * 4211 1000 0 Q 19 3594 * 5931 3407 * 5652 * 5206 1587 5792 6269 4411 * 2155 6847 6135 4596 5137 * 4991 19 98 3931 * 1206 820 * * 4211 1992 0 T 20 4025 * 4551 2512 6619 * 6757 * 2502 3673 6351 * 6269 5031 3332 3950 3171 3829 * 4473 20 23 5952 * 3322 152 * * 4211 1000 0 F 21 * * * * 1101 * 6381 5865 * * * * * * * * * * 6021 1031 21 58 6543 5126 0 * * * 4211 1000 0 K 22 6082 * 2070 3831 * 6719 5846 4677 4082 4905 4403 4146 * 4605 4375 3629 2406 4161 * * 22 27 5768 * 1585 585 0 * 4174 1000 1157 E 23 4797 * 2679 2335 * 2628 5450 * * 6851 * 4617 1764 * * 5167 6562 4550 * * 23 83 4163 * 443 1918 * * 4211 2088 0 R 24 3374 * 3437 2729 * 5309 * 4419 3498 5047 * 4191 3254 5934 3385 3322 3351 * * * 24 64 4524 * 1916 444 * * 4211 1920 0 D 25 5021 5503 2224 1727 * 3958 * 5193 4886 * 6269 4059 5161 4205 * 3345 4270 * * * 25 45 * 5040 * * * * 4211 0 0 N 26 * * * 5544 * 4252 * * * * * 607 6499 * 4022 2917 4231 6483 * * 26 60 5004 6721 0 * * 0 4230 1081 1226 H 27 4003 * 2929 3254 5555 4541 4553 * 3987 4557 * 3081 3955 5706 * 3496 2599 6064 * 5746 27 24 5916 * 2585 263 1467 648 4226 1000 1579 E 28 4644 * 2402 2606 5652 4357 * 4736 3051 4882 * 3447 3788 4899 5247 3664 6241 * * 5074 28 28 * 5725 * * 0 * 4230 0 1226 T 29 4466 * 3080 2098 * 2322 * * 3829 4466 * 3911 5028 5233 5928 6310 3390 * 5566 5789 29 15 * 6623 * * * 0 4215 0 1459 A 30 1995 4623 4318 5065 * * * 4958 5603 5553 5005 5925 4972 4682 5161 1705 4809 3930 * * 30 13 6751 * 1000 1000 0 * 4212 1000 1814 C 31 * 0 * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 4207 0 0 S 32 6553 6770 * 5751 4324 * 3987 3951 2949 3724 6630 5703 * 5488 1952 3672 3736 3307 6141 * 32 0 * * * * * * 4207 0 0 H 33 * * * * 2868 * 1886 * * * * * * * * 5036 5580 * * 886 33 0 * * * * * * 4207 0 0 H 34 * * * * * * 0 * * * * * * * * * * * * * 34 0 * * * * * * 4207 0 0 P 35 4773 * 6191 * * * * * 3821 * * 6744 743 3888 5258 2825 4748 * * * 35 37 * 5302 * * * * 4207 0 0 G 36 4651 * * 4607 * 349 * * 4073 5384 * * * 6013 * 4835 * * * * 36 34 * 5432 * * * 0 4147 0 1000 P 37 2159 * * 4087 6392 3725 6758 * 4256 6577 6127 5419 2454 5037 4221 6329 3572 2817 6067 * 37 22 * 6077 * * * 0 4102 0 1454 A 38 3300 * * * 3155 * * 5165 * 4514 * * 566 * * * * * * 4684 38 34 * 5440 * * 1624 566 4098 0 1871 V 39 * 5222 3810 5178 5414 * * 1599 4506 4801 * * * 5726 6454 5200 * 1462 * 5627 39 0 * * * * 1449 658 4198 0 1767 F 40 5660 * * * 80 * * * * 4875 * * * * * * * * * * 40 24 5948 * 0 * * 0 4202 1000 1445 H 41 * * 6085 5402 * 3518 534 * * * * * * 6072 3979 4756 * * 5320 4526 41 29 5660 * 2000 415 * 0 4202 1000 1445 D 42 * * 1407 1192 * * 4887 * * 6085 * * * * * 3052 5948 * * * 42 34 5411 * 2322 322 1046 956 4202 1000 1445 R 43 2919 5084 * * * 945 * 4350 5782 4317 4938 * * * 3939 * 3268 * * * 43 83 4934 5422 4118 86 0 * 4250 1313 1000 L 44 5071 * 5462 5010 6613 4986 3868 * 2726 2938 2769 * * 6116 * 2769 5231 5089 * 2637 44 101 3890 * 2167 363 * 0 4268 1588 1000 R 45 * * * 3166 * * * * 408 * * * 4115 5705 5040 * 5188 * * * 45 118 4207 5361 2653 250 0 * 4268 1985 1000 G 46 5440 5770 5280 4762 3660 1884 4395 4828 4809 5532 * * * 6461 6146 2690 6120 * * 2243 46 22 6017 * 4322 74 827 1196 4193 1000 1365 W 47 * * * * * * * * * * * * * * * * * * 145 3389 47 37 5297 * 2000 415 * 0 4206 1000 1000 K 48 4848 * * * * 6071 * * 3651 5189 * 4956 5143 5815 5992 1135 2018 5250 5578 * 48 0 * * * * * 0 4206 0 1000 C 49 * 0 * * * * * * * * * * * * * * * * * * 49 0 * * * * * 0 4206 0 1000 C 50 * 0 * * * * * * * * * * * * * * * * * * 50 187 3040 * 490 1795 * 0 4206 2661 1000 D 51 * 6526 3189 4780 * 2451 * * 2225 * 6106 2833 5600 3208 3072 4515 * * * * 51 105 5084 4612 1585 585 * 0 4206 1300 1000 V 52 3417 * * * * 4901 * 4890 998 * * * 5205 3792 2784 4507 * 4316 * * 52 23 * 5978 * * * 0 4140 0 1793 H 53 * 5213 6473 4524 * * 4655 6532 1720 5828 * 4827 4505 6349 1696 3754 4364 6031 * 6892 53 68 5752 5198 0 * * 0 4104 1000 1961 V 54 3657 4788 * 5627 6577 5461 * * 5176 * * * * * * 3019 1953 1641 3307 * 54 112 6431 3991 0 * * 0 4043 1000 2269 K 55 * * 5103 * 5059 * 3279 * 4097 2360 5625 5208 * * 5819 2825 2580 5616 6017 2510 55 0 * * * * 2702 241 3957 0 2711 E 56 * * 753 2190 * * 5662 * * * * 5599 5107 * * 3228 6478 * * * 56 137 * 3468 * * * 0 3965 0 2661 F 57 * * * * 419 * * * * * * * * * * * * * 1987 * 57 0 * * * * 2305 326 3821 0 3012 D 58 4766 * 1448 2835 * 3340 * * * * * 3402 * * 4907 2692 3736 * * * 58 0 * * * * 3002 192 3937 0 2752 E 59 3799 * 2606 1181 * 5858 * * 4913 5167 * 5250 * 3914 * 4588 3181 * * * 59 92 * 4020 * * 2587 263 3934 0 2658 F 60 * * * * 235 * * * * 3921 * 5171 * * * * * * 4138 * 60 0 * * * * 1765 503 3877 0 2665 M 61 4101 * * 4715 * * * 5208 3680 1112 1920 * * 4960 * * * 4662 * * 61 0 * * * * 1607 574 3971 0 2150 E 62 2632 4544 5463 2652 * 6005 5325 * 2338 * * 3373 * 3744 6654 2693 4642 * * * 62 35 * 5383 * * 2076 391 4060 0 1852 I 63 4375 * * * 6482 * 5303 1063 * 3415 * * * 2403 * 3750 6697 4395 * 5495 63 0 * * * * 0 * 4070 0 1727 P 64 4810 * * 2738 * * * 6655 2327 5244 * * 1254 4017 4632 5069 * 5177 * * 64 0 * * * * * * 4171 0 0 P 65 5225 * * * * 502 * * 5101 * * * 2241 * * * 5238 * * * 65 0 * * * * * * 4171 0 0 C 66 * 0 * * * * * * * * * * * * * * * * * * 66 73 4341 * 0 * * * 4171 1592 0 T 67 2971 4525 * 5046 * 5055 * 5801 2859 5016 * * * 3980 5062 3858 1328 5536 * * 67 0 * * * * * * 4171 0 0 K 68 * * * 4222 4207 * * 5801 2335 4096 5673 * * 6607 3019 2948 2500 2853 * 5668 68 28 5686 * 0 * * * 4171 1000 0 G 69 4363 * 6419 5730 * 375 * * 6653 * * 5687 * * * 3055 * * * * 69 0 * * * * * * 4176 0 0 W 70 4202 6724 * 4712 6794 * * * 1703 * * * 2745 4440 2094 4417 5002 * 5048 4498 70 0 * * * * * * 4168 0 0 H 71 * * * * * * 0 * * * * * * * * * * * * * 71 0 * * * * * * 4138 0 0 S 72 4332 * 3245 4851 * * * * * * * 3041 * 4665 * 1290 2058 * * * 72 0 * * * * * * 3824 0 0 S 73 2393 * * * * * * * * * * 1809 * * * 2166 1731 * * * 73 0 * * * * * * 3304 0 0 S 74 2659 * * * * * * * * * * 1751 * * * 1582 2247 * * * 74 0 * * 0 * * * 2197 0 0 //