HHsearch 1.5 NAME c2x1aA_ FAM FILE c2x1aA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2x1aA_.a3m DATE Sat Aug 28 16:30:59 2010 LENG 87 match states, 87 columns in multiple alignment FILT 115 out of 9038 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 9.0 EVD 0.4444 1.2157 SEQ >ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCC >sa_dssp EECDCADAACBBEEBDDCDADECADECBDCEDBEBCDCEEDEEBDBCACACAEDDEBACCACEEBDDDEBEEDEADBCECEEEEEEE >ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCEECCEEEEEEECCCCCCCC >ss_conf 977689977787888999999997311444310120256654212310242279999999999847969888799998248488897 >Consensus gPxxxixIxnLpxxxxxxxlxxxfxxxgxixxxxxxxxxxxxxxxxxafvxfxxxxxaxxaixxlxxxxxxgxxixvxxaxxxxxxG >c2x1aA_ GPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDISG >UniRef50_B6HL46(100-189:394) Pc21g03370 protein n=3 Tax=Ascomycota RepID=B6HL46_PENCW E=2e-13 s/c=0.85 id=16% cov=100% -PFKTIFVSRLSYDTKETDLEREFGRFGPIERISIVKdtvsDKKKKPHRGYGFVVFEREKDMKAAYKETENLSIRGRPVVVDVERGRTTKG >UniRef50_B6HEU4(884-967:1257) Pc20g05340 protein n=23 Tax=Eurotiomycetidae RepID=B6HEU4_PENCW E=4e-06 s/c=0.63 id=17% cov=95% GAQTTVWITNYPPTADEDYLRNLFNKYGEVVDVRMPSLKFDTSRRFS-YLQFDTSSAAHHA-TELHGMRFeDGTRLSVKISDPGQ--- >UniRef50_Q4U9D6(300-385:479) RNA binding protein, putative n=2 Tax=Theileria RepID=Q4U9D6_THEAN E=8e-07 s/c=0.64 id=16% cov=99% --GKRVVLENIPFDLAASDIRRIFEPFGAITECVlYSREMLPGAFYALGYIDFVNANVAQTVCSTMNGFEIAGSKIQVTMAPESSVAG >UniRef50_P38760(402-482:659) RNA-binding protein MIP6 n=8 Tax=Saccharomyces RepID=MIP6_YEAST E=0.001 s/c=0.55 id=18% cov=44% -----------------------------------------------GHVECFSRSDAERLFNILDRRLIGSSLVEASWSKNND--- >UniRef50_UPI0000E460C1(265-339:400) PREDICTED: similar to nucleolin n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E460C1 E=5e-05 s/c=0.65 id=16% cov=86% ----SIFIANVDPSTTGEQIQEFFEE-----NGVTCSNARMVKSRKFAYVDVASEEEFNKAIE-LSESELNGSNIRLERGRKMD--- >UniRef50_A7TPY7(332-409:660) Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TPY7_VANPO E=3e-05 s/c=0.64 id=18% cov=91% ---NSVFVKNLPINTTDEEILDYFSVAGPIKSVFSSKVPKF--NSLWSIITYKKSSDSIKAIQTYDNKTFKEKVISVTKAHSK---- >UniRef50_UPI0000ECAC8F(7-90:1165) Nucleolar protein 8 (Nucleolar protein Nop132). n=3 Tax=Tetrapoda RepID=UPI0000ECAC8F E=1e-05 s/c=0.60 id=13% cov=94% --SKRLYVGGLGHTVSKAELQERFGKFGRVLDVEIITRKDEQGNPTKTFAYVtvsSSEADLRKCISILNKTKWGGKTLQIEFAKES---- >UniRef50_P09012(8-99:282) U1 small nuclear ribonucleoprotein A n=38 Tax=Euteleostomi RepID=SNRPA_HUMAN E=2e-06 s/c=0.58 id=14% cov=100% -PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQIlDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDsdiiaKMKG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 5174 0 0 P 2 5739 * 5216 4627 * * * * * * * 5374 207 * * * 5400 * * * 2 78 5305 5202 0 * * * 7688 1000 0 S 3 6087 4518 6048 4473 * 3630 * 6114 5093 5732 * 2600 3927 * * 1766 2481 5923 * 5797 3 20 6182 * 2585 263 0 * 8444 1000 1000 R 4 3639 3508 6214 * * 6211 4813 * 2444 * * 2885 4980 5918 2011 5602 3162 * * 5542 4 20 6192 * 0 * * * 8799 1000 0 V 5 6673 5109 * 5636 * * 5715 4780 3032 6762 6770 4144 * 5470 2772 2984 1838 3140 * * 5 14 6706 * 2807 222 * * 9095 1000 0 V 6 * * * * * * * 1886 * 1243 5521 * * * * * * 1810 * * 6 0 * * * * * * 9115 0 0 Y 7 5762 7309 * 6962 1603 * 4053 3957 * 5303 6472 * * 6582 * * 6700 3889 4200 1578 7 0 * * * * * * 9111 0 0 L 8 6374 6595 * * 5527 * * 1384 * 2993 4274 * * * * * * 1338 * * 8 0 * * * * * * 9111 0 0 G 9 4698 6686 4586 4680 6386 1577 * * 3166 6525 6615 5208 * 6772 3169 3078 3321 5909 * 6795 9 0 * * * * * * 9111 0 0 S 10 * * 3964 * * 1936 5253 * * * * 827 * 6830 4754 5110 * * * 6647 10 0 * * * * * * 9119 0 0 I 11 * * * * 4229 * * 2117 * 762 4688 * * * * * 6403 3721 * * 11 0 * * * * * * 9119 0 0 P 12 3686 6774 3905 * * 5656 5292 * 6509 6486 * 3060 1048 5897 5799 3117 6018 * * 6635 12 26 5813 * 0 * * * 9119 1855 0 Y 13 5121 * 4429 4841 3311 5869 5849 5192 3330 4373 * 4034 2554 4810 4435 3762 3753 5170 5987 3736 13 0 * * * * * * 9119 0 0 D 14 6949 * 2497 3567 5656 3973 4819 5940 4106 5838 * 2970 * 4561 4066 2772 3561 * 5215 4974 14 25 5874 * 0 * * * 9119 1838 0 Q 15 3397 3559 6558 * 4922 * * 3100 6646 3417 4449 * * 7201 * 5872 2576 1883 5209 5585 15 0 * * * * * * 9126 0 0 T 16 5343 6532 2735 4449 * 5111 * 4922 3463 * * 3982 5428 4791 4992 3345 1501 6609 * * 16 0 * * * * * * 9126 0 0 E 17 4231 * 2638 1545 5801 6748 6495 4779 4509 5219 6733 5225 4488 4310 5564 5161 4879 4102 5301 * 17 0 * * * * * * 9126 0 0 E 18 3449 6761 2362 2246 6139 6759 5912 5156 3907 * * 5208 5314 3531 4636 3355 4174 5912 * 6584 18 28 5700 * 1418 677 * * 9126 1711 0 Q 19 5908 * 1719 2254 4485 4849 6013 6532 4720 5815 6699 6035 * 3086 5939 4492 4126 5093 * 5757 19 0 * * * * * * 9126 0 0 I 20 * * * * 5652 * * 1838 * 950 5044 * * * * * * 2714 * * 20 52 5813 5837 1001 999 * * 9126 1802 0 L 21 5915 * 6589 3275 6049 6688 5948 5498 2479 3301 4917 4866 * 4131 2377 5336 3962 4704 * 3616 21 75 4920 5803 1770 501 928 1076 9110 2456 1780 D 22 4657 * 2593 2524 5761 4874 6591 * 2505 6539 * 4466 * 2770 3671 4328 4616 * * 6632 22 26 6678 6949 2585 263 * 0 9084 1000 2369 L 23 4051 6431 * 4598 2298 * 4762 3171 5763 2060 4794 7017 6964 5599 5591 5034 4688 4015 * 4239 23 29 5633 * 1574 591 937 1066 9080 1724 2914 C 24 4818 4218 * * 851 7021 * 4228 * 2549 4807 * * * * 6593 5185 4609 * 6647 24 114 4993 4488 2430 296 * 0 9096 2270 1782 S 25 4327 5723 4999 2813 5902 3305 * 5204 3202 * 6059 3450 * 4151 3598 2122 6388 7023 * 6767 25 17 6423 * 1000 1000 214 2860 9046 1000 4257 N 26 3880 * 3827 4017 5845 4369 6756 4978 2579 6643 6616 4051 3992 3210 3678 3462 3682 5869 * 6585 26 22 6079 * 567 1621 0 * 9110 1778 1000 V 27 5399 3741 5901 4537 1917 5507 5233 3467 * 4712 6827 4737 * * 4858 4360 5301 4491 * 2318 27 47 4958 * 3024 189 * * 9126 2945 0 G 28 4615 6783 7102 5548 4297 1062 * 6062 4185 6719 * 4708 5308 5776 5078 4049 4179 4540 * 4568 28 50 4883 * 1512 623 * * 9126 3045 0 P 29 5092 5904 3778 3236 5216 3786 4448 3858 2794 5271 6790 3883 3133 4449 4946 5275 4301 5902 * 5143 29 14 6689 * 0 * * * 9126 1000 0 V 30 5636 6712 7159 5406 4732 5762 5417 1910 5330 2754 6779 5207 4989 6832 6699 4828 4359 1994 * * 30 31 5565 * 1552 602 * * 9126 1845 0 I 31 3430 6733 5953 3299 5270 4815 6459 3736 4211 3420 5767 4663 4589 4597 4225 4117 4061 2709 * 5636 31 10 7221 * 0 * * * 9126 1000 0 N 32 3580 5640 3497 3646 4825 4463 5305 4045 3230 4570 6495 3683 4999 4081 4843 3210 5472 4580 * 5260 32 20 7194 7198 0 * * * 9126 1000 0 L 33 4328 4163 4065 7025 3788 5439 5025 2576 5281 3940 6753 4827 4243 5911 4793 3957 4497 2700 5564 6865 33 0 * * * * * 0 9127 0 1000 K 34 5359 5355 4401 5658 6663 6599 3776 3811 2691 5047 6493 4788 5456 4332 3534 3385 4699 2581 6695 5842 34 12 6922 * 0 * 0 * 9127 1000 1000 M 35 5425 5571 5728 4525 3704 * 7039 2026 3935 3485 4131 6627 4795 5071 3736 4715 4414 3346 * 5843 35 25 5886 * 2254 339 * * 9126 1754 0 M 36 4314 6796 5807 7002 3797 5218 4549 2910 3844 4263 4193 4131 3959 6494 3180 4671 5245 3108 5599 5716 36 43 5701 6598 515 1736 * * 9126 1774 0 F 37 4501 5733 5234 3791 4043 7128 5343 4481 3693 3784 6610 4051 4551 5319 2946 4358 3992 3674 6104 3671 37 39 5741 6958 1000 1000 * 0 9110 1699 1000 D 38 6799 * 2730 4493 4090 5200 3812 5855 3731 4476 * 2541 4102 5565 3692 3705 5892 4806 * 4527 38 48 * 4922 * * 965 1036 9107 0 1744 P 39 5104 * 3434 4485 6608 4861 5741 5220 2656 4762 5211 4200 2947 5192 3021 5312 4306 4442 * 3953 39 78 4552 6682 1332 730 1353 717 9079 3302 3434 Q 40 5881 6757 3905 3189 5859 4032 5282 5957 3023 4757 6909 3140 4551 3865 3952 2849 4609 5121 6497 * 40 105 4917 4757 3335 151 403 2037 9081 2855 3088 T 41 7004 5760 5173 3626 5321 3443 7039 4180 2976 4783 5350 3515 4844 5288 4445 3856 2525 4595 * 5687 41 27 5745 * 1844 471 724 1341 9075 1789 3290 G 42 6003 5896 3774 3530 5216 1971 6605 6997 3732 4307 * 3140 4723 4186 5595 4131 4225 4833 * 6710 42 0 * * * * 928 1076 9103 0 1733 R 43 4432 * 5215 3928 7066 4767 4610 5801 2335 5077 6111 4020 4338 3532 2657 4468 4298 5808 6665 4799 43 50 5786 5987 2466 288 * 0 9106 1792 1000 S 44 4222 6995 4720 4804 4352 4345 3893 5291 3902 4353 4871 3938 3577 4939 4013 2582 4897 4636 6386 5183 44 23 * 5983 * * * 0 9098 0 2341 K 45 5050 * 5802 4597 4411 4412 5577 5067 2347 4392 5745 4507 5746 5188 2538 3852 3389 4623 * 4817 45 35 5962 6967 0 * 1314 742 9090 1849 3396 G 46 4035 4264 5105 6867 4980 1523 5248 * 4477 4862 6607 5013 4033 5129 3701 5202 4747 4448 5771 5169 46 105 3829 * 1449 658 2054 397 9094 4260 2850 Y 47 6619 5265 5621 5292 2190 5717 6513 6709 4399 5249 5910 5960 6562 5698 4922 3547 3541 3361 * 2176 47 12 6949 * 0 * 0 * 9115 1000 2432 A 48 1096 3390 * * * 2058 * 5346 5687 * 6531 * * * 5627 5265 * 3576 * 6426 48 23 5986 * 957 1045 * * 9126 1766 0 F 49 5773 * * 5803 1039 5678 4774 4660 5744 3423 * 5196 * 6823 5233 * 4505 6112 6712 2848 49 0 * * * * * * 9126 0 0 I 50 3894 4989 * * 4648 6112 * 1985 * 3699 * * * * * * * 1031 * 5172 50 14 6672 * 3700 115 * * 9126 1000 0 E 51 4704 5124 4180 2173 5391 7007 6076 4616 3232 6099 5674 4552 * 3842 3705 5347 2522 5407 * 5883 51 13 6790 * 2585 263 * * 9126 1000 0 F 52 5301 5687 * * 996 * * * * 3902 5164 * * * * * * 4255 6588 1755 52 0 * * * * * * 9126 0 0 R 53 3249 6984 3667 2676 5223 5995 * 6210 2804 6575 5826 5700 5396 4183 4315 2879 4362 4165 * 4803 53 11 6989 * 0 * * * 9126 1000 0 D 54 * 5660 2603 5108 4975 * 5850 6892 4764 5797 * 2498 * 6923 3974 1999 2513 * * * 54 62 5019 6459 2596 261 * * 9126 2399 0 L 55 4616 7019 5100 3152 6098 * 4359 3333 3128 3977 6084 4909 3027 5301 3356 5033 * 3170 * 4878 55 0 * * * * 0 * 9111 0 1000 E 56 4123 * 2946 1664 6712 4348 5685 5390 4118 5646 * 4607 6817 4377 4280 3166 5661 5895 * 5620 56 0 * * * * * * 9126 0 0 S 57 2628 4721 2061 2745 6783 5912 4833 4850 6700 6518 7039 4933 * 4560 * 2884 4786 5041 * 6558 57 13 6780 * 1585 585 * * 9126 1000 0 S 58 694 5062 * 6112 6042 6759 * * * 4534 5424 6783 6703 4883 5865 5429 4328 3267 * * 58 0 * * * * * * 9126 0 0 A 59 3534 * 3002 3302 * * 5191 4851 2809 3698 6999 4316 6459 3244 3883 5140 4619 4747 5900 4646 59 0 * * * * * * 9126 0 0 S 60 3116 6761 4069 3903 7062 6558 5556 6597 2668 3566 6700 3805 * 3240 2933 3799 5008 * 6999 5118 60 0 * * * * * * 9126 0 0 A 61 689 3354 * 6601 4754 * * 4130 6582 5755 6757 * * * * 6689 * 3073 6548 * 61 0 * * * * * * 9126 0 0 V 62 5469 5267 * * 4335 * * 2004 5062 1937 2926 * 6672 6733 5297 6459 * 2669 * 5908 62 68 7366 4647 1000 1000 * * 9126 1000 0 R 63 3127 6534 4082 2403 * 6649 5818 * 2869 5186 4954 3821 * 3346 3392 3571 4218 * * * 63 14 6673 * 1000 1000 0 * 9099 1000 3331 N 64 3374 5800 4317 3577 5201 4977 4749 5513 2694 3741 4230 4412 * 5036 3999 3681 3821 5003 5593 6588 64 35 * 5391 * * * * 9126 0 0 L 65 5878 5636 * 4930 3728 5849 5653 4323 * 1344 2596 6835 * * 6708 6863 4493 4963 * 3253 65 22 6058 * 591 1572 0 * 9118 1747 2400 N 66 6658 6761 2524 4443 * * 3117 * 6495 * 6689 1404 4939 3528 4401 3952 5986 * * * 66 42 5119 * 1886 455 * * 9126 2481 0 G 67 5182 5809 5267 4678 6994 1311 5231 * 3537 * 6518 2137 7366 4644 4531 6287 7221 6762 * 6711 67 30 5617 * 1000 1000 * * 9126 1730 0 Y 68 4672 6582 * 4191 3295 * 4571 3489 2897 3668 * 7178 7034 3628 4883 3673 2825 4865 6558 4162 68 14 6744 * 1000 1000 * * 9126 1000 0 Q 69 5707 * 4758 2997 4974 * 4961 4198 2747 3765 4984 4575 4044 4206 4323 6729 3614 3819 5778 4079 69 11 6988 * 1000 1000 * * 9126 1000 0 L 70 6783 5408 6548 * 1961 * * 2119 * 1945 5170 7134 * 6459 * * 6558 3351 5549 4888 70 17 6426 * 1000 1000 * * 9126 1000 0 G 71 4617 5386 3226 3685 4287 2478 4261 6733 3355 4265 4368 3228 6496 5896 4866 5442 * 6843 6736 4314 71 25 5859 * 1000 1000 * * 9126 1733 0 S 72 * 6584 3175 4634 6099 807 5944 * 5658 * * 2750 6882 7194 5819 5323 6719 * * * 72 54 4757 * 583 1589 * * 9126 3004 0 R 73 6882 * * 5755 6783 6658 4888 5902 2250 6518 * 3762 6744 4563 1555 3272 5685 5742 6426 3977 73 29 5630 * 2112 380 * * 9126 1706 0 F 74 4591 * 6496 4562 5396 5968 4204 3421 2557 4361 * 5672 2334 4331 3980 5603 3437 5467 * 4940 74 11 7002 * 2322 322 * * 9126 1000 0 L 75 5831 * * * 4951 * * 1521 * 1517 4163 * 5175 * * * * 2566 * * 75 22 7024 7123 2000 415 * * 9126 1000 0 K 76 5601 6527 5509 3772 4733 * 3828 5083 2265 5775 5757 5031 * 4199 2047 4823 5768 3872 * 4575 76 0 * * * * * 0 9121 0 1000 C 77 3522 3860 * * 6751 * * 2391 * 2816 5968 * * * * * 6744 1068 * * 77 0 * * * * * 0 9121 0 1000 G 78 4850 6358 3341 2298 4541 4626 4855 6902 3295 * 5819 3660 * 4210 3369 2949 4818 6603 * * 78 10 7140 * 1000 1000 0 * 9127 1000 1000 Y 79 5222 6395 * 5737 2241 * 5329 3455 4484 4294 6864 * 4227 5353 3452 * * 4697 2625 2829 79 28 5713 * 2361 312 * * 9141 1691 0 S 80 1049 6594 5683 5038 * 4057 * 6411 5076 6387 * * 5701 4815 * 2430 4642 4207 * 6901 80 12 6882 * 1000 1000 * * 9122 1000 0 S 81 4579 * 3572 4066 5740 * 6590 6202 2526 5045 6930 3514 4500 3638 3418 3341 2876 5719 * * 81 13 6849 * 2322 322 * * 9072 1000 0 N 82 6890 * 3494 3530 6377 3337 4289 * 3608 6436 6778 3201 2649 5093 4506 3307 3509 5574 * * 82 15 6577 * 0 * * * 9030 1000 0 S 83 4619 * 3196 3241 * 6155 * * 2101 6349 * 3640 6639 3077 3925 2858 4647 5543 * 6519 83 34 5435 * 1656 551 * * 8939 1689 0 D 84 5925 * 2702 2717 * 4848 5379 * 3100 * * 2810 3595 3205 4287 3705 4624 * * * 84 18 6338 * 1000 1000 * * 8789 1000 0 I 85 4312 * * 5145 * 4999 * 3580 2784 3022 3500 6113 6019 3943 3845 3565 3656 3041 * * 85 0 * * * * * * 8550 0 0 S 86 4265 * 3567 4598 * * * * 2068 * * 4712 5590 3185 4785 1551 5933 5567 * * 86 0 * * * * * * 8348 0 0 G 87 * * * * * 0 * * * * * * * * * * * * * * 87 0 * * 0 * * * 6918 0 0 //