HHsearch 1.5 NAME c2w7vB_ FAM FILE c2w7vB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2w7vB_.a3m DATE Sat Aug 28 17:37:12 2010 LENG 82 match states, 82 columns in multiple alignment FILT 21 out of 25 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.4705 1.8509 SEQ >ss_dssp CCCHHHHHHGGGHHHHHHTSTTCEEEEEEEETTTTEEEEEEEESSSHHHHHHHHHHHTTEEEEECCCEECCCEEEEEEEEEC >sa_dssp EECECADEDCEDBEECBEEBEDBDDDDDECCCEEBBACADBDBDCDDBADDACECADEEBDCDCDECEEEECBEBCACADDE >ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHCCEEEHHHCCCCCCEEEEEEEECC >ss_conf 9604567787557888611889527788742676469999981997789999999750420200000137833679998339 >Consensus xxdxxxLxxLxxLxpxlxxxxxixxxsLrfDxxrxELrlqaxaxxFqxfExxxxxlxxxxxVeqGalnxxdxVxGxltirxk >c2w7vB_ STDVAXLSWLAALPATLGQVKDLEITSFKYDGQRGEVRIHARSSDFQPFEQARVKLAEKFNVEQGQLNRSNVVXGSFVLKRQ >UniRef50_A4AXR8(318-396:399) Cluster: General secretion pathway protein L; n=2; Alteromonadales|Rep: General secretion pathway protein L - Alteromonas macleodii 'Deep ecotype' E=2e-10 s/c=0.84 id=32% cov=95% --DASMLIMLDQLAPAFTAT-DVKPQTLRFDASRTEIRIQAQGKNFEALEQFkRSAENAGFLVEQGAInNRDNGVVGTVSVR-- >UniRef50_A1SR64(321-403:403) Cluster: General secretion pathway protein L; n=2; Psychromonas|Rep: General secretion pathway protein L - Psychromonas ingrahamii (strain 37) E=2e-18 s/c=1.11 id=30% cov=101% SVEFDFLTVLDDLSPALMSLKEFEISSLKFDSKKQELQLALTAPSFQAFETFAAELPEHLSAQQGALNNSKsGVSGVLTIRKK >UniRef50_Q3ILN2(318-400:402) Cluster: Putative general secretion pathway protein L; n=3; Alteromonadales|Rep: Putative general secretion pathway protein L - Pseudoalteromonas haloplanktis (strain TAC 125) E=3e-17 s/c=1.07 id=31% cov=99% TSDAGFLELTTELVGVFSQVSNFTPETLRYDKKRNELRMRARAKDFQTFGKVKAILEQQgLTVDQGSLsNDGDFVVGEIKLR-- >UniRef50_Q46833(202-286:286) Cluster: Putative general secretion pathway protein L-type yghE; n=21; Enterobacteriaceae|Rep: Putative general secretion pathway protein L-type yghE - Escherichia coli (strain K12) E=8e-16 s/c=0.99 id=29% cov=101% ADDTRLLAELSAIASTLksASLSDIEMRGFTFDQKRQILHLQLRAANFASFDKLRSVLATDYVVQQDALQKeGDAVSGGVTLRRK >UniRef50_A3UEX0(348-426:428) Cluster: Hypothetical general secretion pathway protein L; n=1; Oceanicaulis alexandrii HTCC2633|Rep: Hypothetical general secretion pathway protein L - Oceanicaulis alexandrii HTCC2633 E=1e-06 s/c=0.67 id=29% cov=91% ------LPLATVLSETLSDVDGVRVDSLRYDASRGELSVTALYSGFGDFERLRMAAEARGAVleDGGARQSAAGVAGEFIVR-- >UniRef50_A6FGY7(323-404:405) Cluster: Hypothetical general secretion pathway protein L; n=1; Moritella sp. PE36|Rep: Hypothetical general secretion pathway protein L - Moritella sp. PE36 E=3e-17 s/c=1.08 id=30% cov=94% ------LVMLSQLTPAFKQLPGIKPISVRYDTKQATIRLQASAADFQVFDKLKSSLSTQFDVAQGTLsQRDGRVQGTLDIKGK >UniRef50_P31708(345-424:425) Cluster: General secretion pathway protein L; n=3; Enterobacteriaceae|Rep: General secretion pathway protein L - Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovorasubsp. carotovora) E=5e-15 s/c=1.02 id=29% cov=96% ----ALLDQLTPLQQLMTQNSAIKIQSLSYDGAAGEFRLALQGTSYQELEQFQQQAAAYYQVQAGEMRQeNDRVEGRLTLRSQ >UniRef50_A0YG41(341-423:423) Cluster: General secretion pathway protein L; n=1; marine gamma proteobacterium HTCC2143|Rep: General secretion pathway protein L - marine gamma proteobacterium HTCC2143 E=2e-05 s/c=0.60 id=25% cov=63% ------MSMLVQIGPVLKATDGISLQSLNYNEKQSEFRITILASGFDDVETVRANLE------------------------- >UniRef50_A0YBF0(362-445:446) Cluster: Type II secretory pathway, component PulL; n=1; marine gamma proteobacterium HTCC2143|Rep: Type II secretory pathway, component PulL - marine gamma proteobacterium HTCC2143 E=4e-05 s/c=0.58 id=30% cov=93% ------LPILASLASTLAADSDelkLIVDQLRFDGGSGELQIQLRSSSIEKLDQLKRNLEGiGLEVDiNSAAEQDDYVMGRLVVRR- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 1308 * * * * * * * * * * * * * * 1370 2257 * * * 1 0 * * * * * * 2614 0 0 T 2 * * 1515 * * * * * * * * 2691 * * * 2527 2696 2578 * * 2 0 * * * * * * 2767 0 0 D 3 * * 478 1826 * * * * * * * * * * * * * * * * 3 0 * * * * * * 2922 0 0 V 4 1218 * * * 2776 * * * 2936 * * * * * * * 2613 2943 * * 4 0 * * * * * * 2922 0 0 A 5 1556 * 3476 * * 2535 * * * * * * * * 3205 1790 * * * * 5 0 * * * * * * 3582 0 0 X 6 3758 * * * 1861 * * * * 1298 3435 * * * * * * 2722 * * 6 0 * * * * * * 3521 0 0 L 7 * * * * * * * 3880 * 219 3778 * * * * * * * * * 7 0 * * * * * * 4151 0 0 S 8 2134 * 4180 4094 * * * 4406 4477 4441 * * 2625 3992 * 2381 4225 4323 * * 8 0 * * * * * * 4151 0 0 W 9 * * * 4008 * * * 4008 * 2394 1679 * * 4296 3981 * * 3494 2555 * 9 0 * * * * * * 4159 0 0 L 10 4326 * * * * * * 4284 * 312 4621 * * * * * 4249 * * * 10 0 * * * * * * 4159 0 0 A 11 2150 * 2404 * * 3981 * * * * * * * 4839 * 2729 2052 3388 * * 11 0 * * * * * * 4159 0 0 A 12 2159 * 4215 2947 * 4181 * * 4899 * * 4575 3454 1950 * 4008 * 4326 * * 12 0 * * * * * * 4159 0 0 L 13 * * * * * * * 2679 * 245 * * * * * * * * * * 13 0 * * * * * * 4159 0 0 P 14 1860 * 4284 * * 4227 * * 3362 * * * 3516 2759 * 2792 3469 4249 * * 14 0 * * * * * * 4159 0 0 A 15 4409 * * 2821 * 4249 * * * * * * 1064 3130 * 2589 * * * * 15 0 * * * * * * 4159 0 0 T 16 1366 * * * * * * 3981 * 3290 * * * * * * 1956 2755 * 4621 16 0 * * * * * * 4159 0 0 L 17 * * * * 1385 * * 3981 * 1147 4296 * * * * * * 4284 * * 17 93 4008 * 1000 1000 * * 4159 1000 0 G 18 2082 * 3124 * * 4409 * * 2498 * 4215 * * 4607 * 2057 3477 * * * 18 0 * * * * * * 4159 0 0 Q 19 2695 * 3143 3670 * 3447 * * 2951 * * 4575 * 2059 * 2728 * * * * 19 62 * 4575 * * * * 4159 0 0 V 20 * * 3931 * * * * * * 2549 * 3233 * 3648 * * 2601 1277 * * 20 126 * 3582 * * 0 * 4142 0 1000 K 21 * * 2488 * * * * * 3200 * * * 1241 * * 1786 * * * * 21 0 * * * * 0 * 4236 0 1573 D 22 3567 * 2250 2428 * 1992 * * * * * 3428 * 3013 * 4284 * * * * 22 93 4008 * 1585 585 * * 4159 1000 0 L 23 * * * * 3232 * * 1643 * 1512 4568 * * * * * * 2468 * * 23 0 * * * * * * 4159 0 0 E 24 * * * 2617 * * * 4008 1532 * * * * 3732 2603 3405 3400 * * * 24 0 * * * * * * 4159 0 0 I 25 4575 * * * * * * 2027 * 1869 4008 * 1916 * * * * 3158 * * 25 0 * * * * * * 4159 0 0 T 26 * * 2614 2625 * * * 4370 * * * 4181 * 1537 2994 4215 4409 * * * 26 0 * * * * * * 4159 0 0 S 27 * * * * * 4008 4284 * * 3719 * 4568 * 4008 * 1121 2252 4779 * * 27 0 * * * * * * 4159 0 0 F 28 * * * * 3195 * * 4632 * 497 * * * * * * * 2817 * * 28 0 * * * * * * 4159 0 0 K 29 * * * * * * * * 1739 * * 4227 * * 1087 3130 4008 * * * 29 0 * * * * * * 4159 0 0 Y 30 * * * * 977 * * * * * * * * * * * * * * 1024 30 114 * 3719 * * * * 4159 0 0 D 31 * * 264 4112 * * * * * * * 3192 * * * * * * * * 31 0 * * * * * 0 4187 0 1337 G 32 1958 * 4419 3173 * 1997 * * 4116 * * * 3948 3952 * 3321 4402 * * * 32 0 * * * * 0 * 4187 0 1337 Q 33 2308 * 4575 * * 4008 * * 1537 * * 2861 * 3023 * 3494 * * * * 33 0 * * * * * * 4159 0 0 R 34 4296 * 4607 * * * * * 4215 * * 4839 * 3297 610 4008 * * * * 34 0 * * * * * * 4159 0 0 G 35 3326 * * * * 1601 * * * * * 2020 * 2742 * 2882 4685 * * * 35 0 * * * * * * 4159 0 0 E 36 2683 * * 447 * * * 4008 * * * * * * * * 4370 * * * 36 0 * * * * * * 4159 0 0 V 37 * * * * 3261 * * 2571 * 556 * * * * * * * 4409 * * 37 0 * * * * * * 4159 0 0 R 38 * * * * * * 4008 * * * * * * 2479 605 3305 * * * * 38 0 * * * * * * 4159 0 0 I 39 * * * * * * * 1852 * 1080 2749 * * * * * * 3305 * * 39 0 * * * * * * 4159 0 0 H 40 3255 * * 3270 * 4284 4409 * * * * * * 896 4249 * 3276 * * * 40 0 * * * * * * 4159 0 0 A 41 830 * * * * * * 3099 * 2126 * * * * * * * 3449 * * 41 0 * * * * * * 4159 0 0 R 42 * * * * * * * * * 3276 * * * 2924 2159 2362 1711 4607 * * 42 0 * * * * * * 4159 0 0 S 43 696 * * * * 3477 * * * * * * * * * 2383 * * * 3305 43 0 * * * * * * 4159 0 0 S 44 3178 * * * * * * * 2171 * * * 3470 4607 4632 1559 3426 3981 * * 44 0 * * * * * * 4159 0 0 D 45 4575 * 1672 4568 * 2840 * * * * * 2815 * * * 1915 4181 * * * 45 0 * * * * * * 4159 0 0 F 46 * * * * 444 * * 4008 * * * * * * * 3981 * * * 2841 46 0 * * * * * * 4159 0 0 Q 47 3343 * 4227 3307 * 3252 * * * * * * 4621 1211 * 2563 * * * * 47 0 * * * * * * 4159 0 0 P 48 2399 * 2347 3517 * * 4568 * 4008 * * * 4409 2931 * 3286 4249 4370 * 4621 48 0 * * * * * * 4159 0 0 F 49 * * * * 742 * * 3449 * 1959 * * * * * * * 4227 * * 49 0 * * * * * * 4159 0 0 E 50 * * 1841 581 * 4249 * * * * * * * * * * * * * * 50 0 * * * * * * 4159 0 0 Q 51 3719 * 4284 * * * * * 2295 * * * * 1402 3535 * 2291 * * * 51 0 * * * * * * 4159 0 0 A 52 3516 * * * 1152 * * 4568 * 1669 * * * * * * * 3238 * * 52 60 4609 * 0 * * * 4159 1000 0 R 53 4178 * * * * * * * 1829 * * * * 2928 1400 3205 4488 * * * 53 0 * * * * * * 4022 0 0 V 54 2657 * * 3436 * * * * * * 3972 4628 * 2280 3929 2317 3514 3554 * * 54 0 * * * * * * 4022 0 0 K 55 2484 * * 3325 * * * 4112 4395 2874 * 3169 * 2450 3818 4243 * 4018 * * 55 0 * * * * * * 4022 0 0 L 56 1550 * * 4589 * * * * * 847 * * * * * * * 4035 * * 56 120 3643 * 0 * * * 4022 1442 0 A 57 1618 * * 1856 * 3719 * * * * * 4589 4178 4628 3818 3135 * * * * 57 58 4666 * 0 * * * 4022 1000 0 E 58 1781 * * 2397 * 3864 * * 3376 * * * * 2759 * * 2277 * * * 58 170 3166 * 0 * * * 3991 1649 0 K 59 * * 2948 * * 2054 4154 * 3374 * * 4689 * 2619 2527 * * * * 3293 59 90 4044 * 0 * * * 3991 1000 0 F 60 * * * * 1213 3829 * * * 1935 * * * * * * * * * 2079 60 0 * * * * * * 3991 0 0 N 61 3123 * 4193 2388 * * * 3535 * 3227 * 4352 * 4117 3817 4154 2763 3934 * * 61 0 * * * * * * 3991 0 0 V 62 4154 * * * * * * * * 3962 * * * * * * * 185 * * 62 105 3829 * 1000 1000 * * 3991 1000 0 E 63 4193 * 2324 1389 * * * * 4689 * * * * 1621 * * * * * * 63 103 3864 * 0 * * * 3991 1000 0 Q 64 3398 * 4336 * * 2894 * * * * * 3864 * 782 * * 3817 * * * 64 0 * * * * * * 3991 0 0 G 65 * * 3934 * * 208 * * * * * * * * * 3864 * * * * 65 57 4689 * 0 * * * 3991 1000 0 Q 66 1121 * * 2637 * * * * * * * * * 2139 * 3353 4193 * * * 66 0 * * * * * * 3991 0 0 L 67 3856 * * * * * * 3420 * 1060 2045 * * * 3762 4577 * * * * 67 508 1753 * 0 * * * 3978 2514 0 N 68 * * * 3856 * * * * 3796 * * 728 * 2351 4076 * * * * * 68 108 3796 * 0 * * * 3978 1000 0 R 69 * * 4028 * * * * * 2251 * * 4129 * 2554 1486 2793 * * * * 69 278 2511 * 0 * * * 3978 2081 0 S 70 2779 * 2576 * * 1709 * * * * * 2297 * * * 2496 * * * * 70 0 * * * * * * 3978 0 0 N 71 3762 * 1103 2642 * 3315 * * 4129 * * 2806 * * * * * * * * 71 236 2726 * 0 * * * 3978 1876 0 V 72 3901 * * 3824 4028 1775 * * * 4316 * * * 2503 2610 * * 4334 * 3856 72 106 3824 * 0 * * * 3978 1000 0 V 73 * * * * * * * 3796 * * * * * * * * * 108 * * 73 0 * * * * * * 3978 0 0 X 74 3012 * * 2873 3282 * * 4255 * * 3795 4261 * 4117 * 2509 3088 3193 * * 74 0 * * * * * * 3940 0 0 G 75 * * * * * 106 * * * * * * * * * 3824 * * * * 75 0 * * * * * * 3978 0 0 S 76 4354 * * 2889 * 3901 * * * * * * * * 2319 2922 1668 3290 * * 76 0 * * * * * * 3978 0 0 F 77 * * * * 2250 * * 3182 * 943 * * * * * * * 2650 * * 77 0 * * * * * * 3978 0 0 V 78 * * 4174 * * * * 3028 4028 * * * * * * 3554 1112 2232 * * 78 0 * * * * * * 3978 0 0 L 79 * * * * * * * 1739 * 1221 * * * * * * * 1881 * * 79 0 * * * * * * 3978 0 0 K 80 4304 * * * * * * * 2239 * * * * 4520 625 * 4455 * * * 80 0 * * * * * * 3864 0 0 R 81 * * * * * 3622 * * 3571 * * 2566 3761 * 1295 3257 * * * 3649 81 0 * * * * * * 3494 0 0 Q 82 * * * * * * * * 663 * * * * 1441 * * * * * * 82 0 * * 0 * * * 3311 0 0 //