HHsearch 1.5 NAME c2rt6A_ FAM FILE c2rt6A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2rt6A_.a3m DATE Sat Aug 10 08:30:36 2013 LENG 98 match states, 98 columns in multiple alignment FILT 14 out of 18 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.5 EVD 0.4413 0.1575 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHTSTTTTTCCCCTTCCTTTSCSSCCSHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC >sa_dssp EEEDEEEEEDDDDBDDCEEEBDECEEEBEBDEEDDDEEBCEEAEDBDBABEBABECCDDCEEBEEEECEEDCEECCECACBABEBACECCEEEDEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCC >ss_conf 98348999999999999999832001100000256899996241378999999999999999998350679999999999999999999701242139 >Consensus MkxxxllxxLxxqlxxLxxxxxxixxxxxxxxrFDxxLFxcrsxxLxxylxExxxxxxxLxxxvxxxxxxrvxxLaeklxxQIxAiqRElaTqxLRex >c2rt6A_ MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREW >UniRef50_D1P4G4(1-97:182) Primosomal replication protein n=6 Tax=Enterobacteriaceae RepID=D1P4G4_9ENTR E=4e-09 s/c=0.64 id=38% cov=100% MKTQALLEALKKQIDELEARVTPIKDQEFSHSRFDMQLFSHKSTRLGDCQKELNNLYQQLCHSVTLKHTQQVNFLTEKIVHQMQAISRELSTQSLRE- >UniRef50_C9XXU0(1-97:171) Primosomal replication protein N'' n=2 Tax=Cronobacter RepID=C9XXU0_CROTZ E=1e-22 s/c=1.10 id=47% cov=99% MRTPLLLQSLKTRLATLRELIEPLASQRHFSPRFDRQLFSCSGARLGDYLAEAEESLAHLEAAVTQGDAARVAWLAERLAAQIEALQREAATATLR-- >UniRef50_Q2NV63(1-96:177) Primosomal replication protein N n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NV63_SODGM E=1e-11 s/c=0.74 id=35% cov=99% MHASQLITALGARLNELAARIDTQGHPLVQQSRFDPLLFSARGNRLQDYLSESRATLSHLTSAVEQGRTERVAWLAQRLTDQMLALSRELATQNLR-- >UniRef50_B7VM24(18-111:196) Primosomal replication protein N'' n=4 Tax=Vibrionales RepID=B7VM24_VIBSL E=0.0002 s/c=0.50 id=29% cov=91% --------KLKSVIDTLIGHCSQVDKSRgaYHQALFDRTLFKCSSSILLPYALETQATYNTIvrEQATNQLTASRANYLTEKLTNQIAAIQRELANHDLR -- >UniRef50_B4EU75(1-97:180) Primosomal replication protein N'' n=4 Tax=Proteus RepID=B4EU75_PROMH E=1e-18 s/c=0.97 id=32% cov=100% MKKTDPLSLFKKQIDNLAETLAPIANKKIAAPCFDTALFHHRSDSLGGYMQQIRDNFTQLITCVEAQRSQQVKFLATQILQQIEALTRELSTQTLRK- >UniRef50_C8Q3V5(1-94:170) Primosomal replication protein N'' n=1 Tax=Pantoea sp. At-9b RepID=C8Q3V5_9ENTR E=7e-11 s/c=0.73 id=32% cov=97% MPLPRPQQRLQLTLQLLRQQIAQQPDGSCRQPRFDAQLFHCKGTRLADYLQELEHNVAQLTAA--DQDVTRRQWLADKVVDQIAALQRECQSQQLR-- >UniRef50_B5FD93(5-97:183) Primosomal replication protein N' n=2 Tax=Vibrio fischeri RepID=B5FD93_VIBFM E=1e-13 s/c=0.84 id=27% cov=91% --------SIEIMLEQLGKTAAEIDRRRGEQrlPLFDERLFGCRSRYLVPCINEAKATLGSIQREEKANilTAQRAEYLTQMLVAQIEAIQREVATQRIR -- >UniRef50_D0YZ22(10-98:183) Primosomal replication protein N prime prime n=5 Tax=Photobacterium RepID=D0YZ22_LISDA E=2e-13 s/c=0.86 id=27% cov=90% -----LIAQLKTQAANLDRT-----RGEANKPLFDEQLFRCRSKLLTPCVNEIASEVFKLRQEQQSGRLlpTRTQHICEKIVAQIQAVQREFATISIRK- >UniRef50_C9NYK0(1-98:182) Primosomal replication protein N prime prime n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NYK0_9VIBR E=1e-10 s/c=0.69 id=28% cov=99% MKQFGQLSSLLEQLEQ-EATLLDNQRGEQQQALFDQKLFRCQSKLLTPYTYEAHETLDKILCEQSSGSLSpdQAEFLSEKLLWQISAIKRELATTALRQ- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 3139 0 0 K 2 * * 3320 * * * 3188 * 795 * * * 3050 * 3428 * * * * * 2 0 * * * * * * 3139 0 0 T 3 3188 * * * * * * * 3065 3050 * * * 2852 * * 967 * * * 3 0 * * * * * * 3139 0 0 A 4 3147 * * * 2852 * * * * * * * 2227 1710 * 3188 3065 * * * 4 0 * * * * * * 3139 0 0 L 5 2328 * 3065 * * 2852 * * 3230 2281 * * * 3188 3050 * * * * * 5 0 * * * * * * 3139 0 0 L 6 * * * * * * * * * 588 * * 2187 3120 * * * * * * 6 0 * * * * * * 3267 0 0 L 7 * * * * * * * 2295 * 542 * * * 3195 * * * * * * 7 0 * * * * * * 3267 0 0 E 8 2390 * * 2375 * * * * * * * 3365 * 2375 * 2149 3305 * * * 8 0 * * * * * * 3267 0 0 K 9 2082 * * * * * * * 2485 3417 * * * 3529 3504 2048 * 3736 * * 9 0 * * * * * * 3588 0 0 L 10 * * * * 3456 * * 2976 * 355 * * * * * * * * * * 10 0 * * * * * * 3598 0 0 E 11 * * * 1788 * 3712 * * 1334 3650 * * * 3546 * * 3789 * * * 11 0 * * * * * * 3598 0 0 G 12 3712 * * 2663 * 3570 * 2976 2600 3546 * * * * 3789 3535 2782 * * * 12 0 * * * * * * 3598 0 0 Q 13 * * * * * * * * * * 2976 * * 833 2839 * 3546 3535 * * 13 0 * * * * * * 3598 0 0 L 14 3608 * * * * * * 1316 * 954 * * * * * * * * * * 14 0 * * * * * * 3598 0 0 A 15 2123 * 1628 1811 * * * * * * * 3712 * 3546 * * * * * * 15 0 * * * * * * 3598 0 0 T 16 3676 * * 2736 * * * * * 3546 * 2530 * 2274 * * 1707 * * * 16 120 * 3650 * * * * 3598 0 0 L 17 * * * * * * * * * 0 * * * * * * * * * * 17 0 * * * * 0 * 3489 0 1000 R 18 1725 * 3608 2704 * 3960 * 3535 * * * * * * 2100 3676 * * * * 18 0 * * * * * * 3598 0 0 Q 19 2122 * * 2103 * 3535 * * 2976 * * * * 2046 3608 * * * * * 19 0 * * * * * * 3598 0 0 R 20 3789 * * * * * 3535 * * 3979 * * * 2609 2094 * 1397 * * * 20 123 * 3608 * * * * 3598 0 0 C 21 3811 2459 * * * * * 1612 * 2399 * * * * * 3846 * 2637 * * 21 0 * * * * * 0 3498 0 1000 A 22 1246 * 3643 2741 * * * * 3576 3436 * * * * * 3442 3635 * * * 22 0 * * * * * 0 3498 0 1000 P 23 * * 3436 2829 * * * * * * * * 997 2428 * * 3643 * * * 23 0 * * * * * 0 3498 0 1000 V 24 * * * * * * * 1051 * 3850 * 3436 * 2524 * * * 2459 * * 24 0 * * * * * 0 3498 0 1000 S 25 1596 * 2103 * * 3643 * * 3635 * * * 3414 3436 * 3476 * * * * 25 0 * * * * 0 * 3498 0 1000 Q 26 3789 * 2649 * * * 2694 * 3535 * * 3456 * 3570 1792 3979 * * * * 26 0 * * * * * * 3598 0 0 F 27 * * * * 3570 2016 * * 3456 * * * 3712 2866 2326 2604 * * * * 27 0 * * * * * * 3598 0 0 A 28 2667 * * 1895 * * * * 3525 3773 * * * 3872 1928 3599 * * * * 28 125 3596 * 1000 1000 * * 3586 1000 0 T 29 2798 3599 * * 2753 3060 3208 3525 * * * * * 3766 * * 3625 3773 * 3596 29 0 * * * * * * 3586 0 0 L 30 3525 * * 3060 4054 * 2936 3710 * 3625 * 3728 3872 2769 3599 3797 * * * * 30 0 * * * * * * 3586 0 0 S 31 3525 * * * * * 3797 * 3728 * * * * 1211 3104 2824 3710 * * * 31 184 3060 * 1000 1000 * * 3586 1083 0 A 32 2075 * * * * * * * * * * * 1080 * * 1787 * * * * 32 0 * * * * * * 3586 0 0 R 33 * 3525 * * * * * * * 1323 * * * * 961 * * * * * 33 0 * * * * * * 3586 0 0 F 34 * * * * 0 * * * * * * * * * * * * * * * 34 0 * * * * * * 3586 0 0 D 35 * * 0 * * * * * * * * * * * * * * * * * 35 0 * * * * * * 3586 0 0 R 36 3599 * * 2039 * * * * * * 3797 * 3773 2738 1775 * 3525 * * * 36 0 * * * * * * 3586 0 0 H 37 3525 * * * * * 3625 * 2738 3773 * * * 1480 3060 * 3596 4382 * * 37 0 * * * * * * 3586 0 0 L 38 * * * * * * * * * 0 * * * * * * * * * * 38 0 * * * * * * 3586 0 0 F 39 * * * * 0 * * * * * * * * * * * * * * * 39 0 * * * * * * 3586 0 0 Q 40 * * * * * 3060 2202 * 3596 * * * * 3625 2747 1870 * * * 3710 40 0 * * * * * * 3586 0 0 T 41 3773 712 * * * * 2655 * * * * * * * 3710 * 3625 * * * 41 0 * * * * * * 3586 0 0 R 42 * * * * * * 4382 * 2115 * * * * 3766 1196 2807 * * * 3872 42 0 * * * * * * 3586 0 0 A 43 3625 * * * * 1590 * * * * * * * * * 769 * * * * 43 0 * * * * * * 3586 0 0 T 44 4054 * 3525 * * * 3710 * 2344 * * 3773 * * 3060 3596 1719 * * * 44 0 * * * * * * 3586 0 0 T 45 * * * * * * * 3596 * 2344 * * * 3710 1490 3525 3625 * * 3060 45 0 * * * * * * 3586 0 0 L 46 * * * * * * * * * 0 * * * * * * * * * * 46 0 * * * * * * 3586 0 0 Q 47 3599 * * * * 1799 * 4075 * 3596 * * * 2697 * 3710 2344 4045 * * 47 0 * * * * * * 3586 0 0 A 48 3625 * 1209 * * 3525 * * * * * * 1323 * * * * * * * 48 0 * * * * * * 3586 0 0 C 49 * 1081 * * * * * * * * * * * * * * * * * 923 49 0 * * * * * * 3586 0 0 L 50 3596 * * * * * * 3060 * 1179 3525 * * 3797 * * 3766 3018 * * 50 0 * * * * * * 3586 0 0 D 51 4054 * 2743 4382 3710 * * * 3797 3596 * 2356 * 2562 * 3773 * * * 3766 51 0 * * * * * * 3586 0 0 E 52 * * * 131 * * * * * * * * * 3525 * * * * * * 52 0 * * * * * * 3586 0 0 A 53 1629 * * * * * * 1704 * 2695 * * * * * 3773 2815 * * * 53 0 * * * * * * 3586 0 0 G 54 3728 * * 2809 * 3625 3041 * 2349 * * 3797 * 3596 2131 * * * * * 54 0 * * * * * * 3586 0 0 D 55 1858 * 2574 2902 * * 3599 * * 3872 * 3797 * 3710 * 3018 * * * * 55 0 * * * * * * 3586 0 0 N 56 * * * 3728 * * 3710 * * 3797 * 1650 * * * 4054 1332 * * * 56 0 * * * * * * 3586 0 0 L 57 * * * * 2615 * * * * 1133 * * * * * * * 2662 * 2165 57 0 * * * * * * 3586 0 0 A 58 2160 3710 3766 * 3728 4045 * * * * * 3596 * 2014 * 3773 3525 * * * 58 0 * * * * * * 3586 0 0 A 59 2954 * * * * * 2310 * 2747 * * * * 1654 * 3060 3596 * * * 59 0 * * * * * * 3586 0 0 L 60 * * * * * * * 1856 * 466 * * * * * * * * * * 60 125 3596 * 1000 1000 * * 3586 1000 0 R 61 * 3797 * 2807 * * * 2891 3710 3766 * * * 2409 2676 * 2684 * * * 61 0 * * * * * * 3586 0 0 H 62 2809 3766 * * * * 2709 * * * * 3710 * 2142 2574 3773 3525 * * * 62 0 * * * * * * 3586 0 0 A 63 1133 3525 * 1658 * * * * * * * * * * * 3797 * * * 3872 63 124 * 3599 * * * * 3586 0 0 V 64 * * * 2957 * * * * 4271 * * * * 2635 * * 3484 814 * * 64 0 * * * * * 0 3472 0 1000 E 65 * * * 1662 * * * 3595 2957 * * 3484 * 2665 * 3683 2761 * * * 65 0 * * * * 0 * 3472 0 1000 Q 66 2274 * 3599 3872 * * * * * 3797 * * * 1751 * 2344 3710 * * * 66 0 * * * * * * 3586 0 0 Q 67 * * * * * 1598 * * 3797 3596 * 3060 * 1650 * 3710 * * * * 67 90 4045 * 1000 1000 * * 3586 1000 0 Q 68 * * 2809 * * * 3797 * * * 4075 * * 3625 1224 3766 2803 * * * 68 0 * * * * * * 3586 0 0 L 69 2297 * * * * * * * * 1273 * * * 3872 * 3525 2785 3599 * * 69 113 3728 * 1000 1000 * * 3586 1000 0 P 70 4054 * 3872 2741 * * * * * * * * 3625 2189 * 2678 1914 * * * 70 288 2467 * 1000 1000 * * 3586 1686 0 Q 71 * * * * * * * * * * * * * 1360 712 * * * * * 71 0 * * * * * * 3586 0 0 V 72 1625 * * * * * * * * * * * * * 3599 * 3728 949 * * 72 0 * * * * * * 3586 0 0 A 73 1823 * * 2050 * * * * 3525 * * 2693 * 2662 * * 3710 * * * 73 0 * * * * * * 3586 0 0 W 74 * * * * 1407 * 3728 * * * * * * * * * * * 1752 1996 74 0 * * * * * * 3586 0 0 L 75 * * * * * * * 3728 * 224 3872 * * * * * * * * * 75 0 * * * * * * 3586 0 0 A 76 1145 3728 * * * * * * * * * * * * * 3041 1511 * * * 76 0 * * * * * * 3586 0 0 E 77 * * 3599 649 * * * * * * * * * 2373 * * 3525 * * * 77 0 * * * * * * 3586 0 0 H 78 * * * * * * 3625 * 914 * 3060 * * 3525 2463 * * * * * 78 0 * * * * * * 3586 0 0 L 79 * * * * * * * 1687 * 721 * * * * * * * 3599 * * 79 0 * * * * * * 3586 0 0 A 80 2824 * * * * * * 3710 * 1573 * * * * * * 2682 1783 * * 80 0 * * * * * * 3586 0 0 A 81 1117 * 2684 * * * 3797 * * * * 3596 * 3525 * * 3872 * 3766 * 81 0 * * * * * * 3586 0 0 Q 82 * * * * * * * * * * * * * 0 * * * * * * 82 0 * * * * * * 3586 0 0 L 83 * * * * * * * 503 * 3625 2228 * * * * * * * * * 83 0 * * * * * * 3586 0 0 E 84 2230 * * 1523 * 3710 * * * 3773 * * * 2762 * 3766 3872 * * * 84 0 * * * * * * 3586 0 0 A 85 0 * * * * * * * * * * * * * * * * * * * 85 0 * * * * * * 3586 0 0 I 86 * * * * * * * 984 * 1255 * * * * * * * 3728 * * 86 0 * * * * * * 3586 0 0 A 87 3625 * * * * * * * 3766 * * * * 1032 * 2785 2243 * * * 87 0 * * * * * * 3586 0 0 R 88 * * * * * * * * * * * * * * 0 * * * * * 88 0 * * * * * * 3586 0 0 E 89 * * * 0 * * * * * * * * * * * * * * * * 89 0 * * * * * * 3586 0 0 A 90 2824 3599 * * 3728 * * 4075 * 987 * * * * * 3710 * 4045 * * 90 0 * * * * * * 3586 0 0 S 91 667 * * * * * * * * * * * * 3599 * 1797 * * * * 91 0 * * * * * * 3586 0 0 A 92 3625 * * * * * * * * * * 3596 * * * 3599 408 * * * 92 0 * * * * * * 3586 0 0 W 93 4054 * * * * * 3596 3728 * * * * * 673 * * 3766 * 3625 * 93 0 * * * * * * 3586 0 0 S 94 3766 * 3596 * * * * * * * * 3045 3872 3599 3060 2130 2162 * * * 94 0 * * * * * * 3586 0 0 L 95 * * * * * * * 2356 * 402 * * * * * * * 4382 * * 95 0 * * * * * * 3586 0 0 R 96 * * * * * * * * * * * * * * 0 * * * * * 96 0 * * * * * * 3586 0 0 E 97 * * * 864 * * * * 1767 * * * * 2675 * * * * * * 97 0 * * * * * * 2877 0 0 W 98 * * * * * * * * * * * * * * * * * * 0 * 98 0 * * 0 * * * 1000 0 0 //