HHsearch 1.5 NAME c2rrfA_ FAM FILE c2rrfA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2rrfA_.a3m DATE Sat Aug 6 10:03:11 2011 LENG 141 match states, 141 columns in multiple alignment FILT 7 out of 11 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.3 EVD 0.3985 -1.1266 SEQ >ss_dssp CCCCSSSCHHHHHHHHHHHHCEEEEECCSSCCSCEEEEEEECTTSSEEEEESSSEEEEETTTCCCEECCCCSSCSSSSSCCCSCCEEEECCTTSSSCEEE EEECCCSSSCCHHHHHHHHHHHHHHHHHHHHSCSSSSSSCC >sa_dssp EEEDEEEDEEDCECDECBDDBBCACACBEEDEEDDEADAEBBEECDDACADEEDEDEBDBEDBEDBDCDEEDEDEDEEECDADBACACBDEEEEEDECDA DACACEDEECDDEDACCAACAACCCADECDEDEDEEEEDEE >ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCEEEE EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >ss_conf 9654211146787689864574478970677887226888627805899437878713346653347886247888877640379999705554312589 99832777631000026899999999998742001277789 >Consensus xxxxxxxaEFyxKxLkxLxxGaxfxVtxxxxexxeTxxCkLsxNxRxlxldgDxhxeIelxxixxvQxltexxxxggxxxraxGxxlqYxxxxxxxvtql xLxaxedxxxxrkqsxaWlaAmqKAxKlLxEsrdqxxpsxx >c2rrfA_ GSSGSSGAEFYDKQLKVLLSGATFLVTFGNSEKPETMTCRLSNNQRYLFLDGDSHYEIEIVHISTVQILTEGFPPGGGNARATGMFLQYTVPGTEGVTQL KLTVVEDVTVGRRQAVAWLVAMHKAAKLLYESRDQSGPSSG >UniRef50_UPI0000E478E9(102-239:240) Cluster: PREDICTED: similar to MGC83954 protein; n=1; Strongylocentrotus purpuratus|Rep: PREDICTED: similar to MGC83954 protein - Strongylocentrotus purpuratus E=2e-36 s/c=1.11 id=34% cov=88% --------EFFNKHLKALMNGCNFSVE--TLEEGQTNSyCKLTSNHRNILFNDEKpdkdnskttmwvHDPVALLSIQNLQMMTsEANVNGHVIPKAVTIL YKY----IDEMREVTMTVPDDSS--RKQSIAWIVALQKAYKLLNEAKDrQELPS-- >UniRef50_A7S7Z7(80-196:199) Cluster: Predicted protein; n=1; Nematostella vectensis|Rep: Predicted protein - Nematostella vectensis (Starlet sea anemone) E=1e-34 s/c=1.25 id=35% cov=81% --------EFFHKHLKILCNGANFIV---DNSAPLTFNCKLEHNthREILFeCDGDAYHEpIELSRLVSVQLIAD-----NPDDRVSGIILKYKERA--E VMEVKLHAIGTSEAEKKSGLAWIAAMQRAIKMLFE---------- >UniRef50_Q1RQ12(104-235:237) Cluster: Zinc finger protein; n=1; Ciona intestinalis|Rep: Zinc finger protein - Ciona intestinalis (Transparent sea squirt) E=1e-06 s/c=0.41 id=26% cov=87% --------EFYEKSIPALTQGTLMSVSEPIANSSESfgeFDCKLSKDHRILKLvhtkksKADANPPkIILSKLLEIKFIITDSGDAGTQKTPAGFKITYK DEEDSAITHsLILRAVEP-----KSSLPWLSSFQKAIKMLFEARN------- >UniRef50_UPI000156026C(18-206:206) Cluster: PREDICTED: similar to Zinc finger, FYVE domain containing 21; n=1; Equus caballus|Rep: PREDICTED: similar to Zinc finger, FYVE domain containing 21 - Equus caballus E=3e-92 s/c=0.85 id=80% cov=96% ALVSHKEAEFYDKQLKVLLSGATFLVTFGNSEKSETMVCRLSNNQRYLLLDGDSHYEIEIAHISTVQVLTEGFPPGGGNARATGMSLQYTTPGADGVTQL KLTAGEDANASRRQSTAWLAAMHKAVKLLYESRDQ------ >UniRef50_Q8VCM3(1-234:234) Cluster: Zinc finger FYVE domain-containing protein 21; n=11; Euteleostomi|Rep: Zinc finger FYVE domain-containing protein 21 - Mus musculus (Mouse) E=1e-122 s/c=0.95 id=73% cov=96% ALVSHREAEFYDKQLKVLLSGATFLVTFGDSEKPETMVCRLSNNQRCLVLDGDSHREIEIAHVCTVQILTEGFTPGAGSTRATGMLLQYTVPGAEAAAQL RLMAGEDASGSKRQAAAWLAAMHKATKLLYESRDQ------ >UniRef50_UPI0000EBDF9A(127-334:334) Cluster: PREDICTED: hypothetical protein LOC511413; n=2; Eutheria|Rep: PREDICTED: hypothetical protein LOC511413 - Bos taurus E=1e-84 s/c=1.09 id=68% cov=96% APVSRREADFYDRQLKLLLSGATFLVTFENSEKPDTMVCRLSSNQRFllldGDGDGDGHREVEVARIAAVQMLTEGLPPGdtlshtslpasrpaaeGGNA RAIGMTLQYTTPGAEGLTQLTLTAGEDADGSRRQATAWLAAMHKAAKLLYESRDQ------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 423 * * * * 1975 * * * * * * * * * * * * * * 1 0 * * * * * * 1342 0 0 S 2 * * * * * * * * * 1054 * * 1920 * * 1975 * * * * 2 0 * * * * * * 1342 0 0 S 3 * * * * * * * * * * * * * * * 1975 * 423 * * 3 0 * * * * * * 1342 0 0 G 4 * * * * * 1975 * * * * * * * * * 423 * * * * 4 0 * * * * * * 1342 0 0 S 5 * * * * * * 1054 * * * * * * * 1920 1975 * * * * 5 0 * * * * * * 1342 0 0 S 6 * * * * * * * * 2115 * * * * * 958 1975 * * * * 6 0 * * * * * * 1342 0 0 G 7 * * * 423 * 1975 * * * * * * * * * * * * * * 7 0 * * * * * * 1342 0 0 A 8 0 * * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 1342 0 0 E 9 * * 3058 185 * * * * * * * * * * * * * * * * 9 0 * * * * * * 2498 0 0 F 10 * * * * 0 * * * * * * * * * * * * * * * 10 0 * * * * * * 2498 0 0 Y 11 * * * * 1512 * * * * * * * * * * * * * * 623 11 0 * * * * * * 2498 0 0 D 12 * * 1220 2184 * * 2582 * * * * 2445 * * * * * * * * 12 0 * * * * * * 2498 0 0 K 13 * * * * * * * * 185 * * * * * 3058 * * * * * 13 0 * * * * * * 2498 0 0 Q 14 * * * * * * 1512 * * * * * * 1220 * 2184 * * * * 14 0 * * * * * * 2498 0 0 L 15 * * * * * * * 2184 * 359 * * * * * * * * * * 15 0 * * * * * * 2498 0 0 K 16 * * * * * * * * 359 * * * 2184 * * * * * * * 16 0 * * * * * * 2498 0 0 V 17 1309 * * * * * * 2582 * 3058 * * * * * * * 1693 * * 17 0 * * * * * * 2498 0 0 L 18 * * * * * * * * * 0 * * * * * * * * * * 18 0 * * * * * * 2498 0 0 L 19 * 2582 * * * * * * * 1220 2445 * * * * * 2184 * * * 19 0 * * * * * * 2498 0 0 S 20 * * * * * * * * * * * 1512 * 2184 * 1220 * * * * 20 0 * * * * * * 2498 0 0 G 21 * * * * * 0 * * * * * * * * * * * * * * 21 0 * * * * * * 2498 0 0 A 22 746 2445 * * * * * * * * * * * * * * 2184 * * * 22 0 * * * * * * 2498 0 0 T 23 * * * * * * * * * 2184 * 1512 * * * * 1220 * * * 23 0 * * * * * * 2498 0 0 F 24 * * * * 359 * * * * * 2184 * * * * * * * * * 24 0 * * * * * * 2498 0 0 L 25 * * * * * * * 2582 * 1220 * * * * * 1309 * * * * 25 0 * * * * * * 2498 0 0 V 26 * * * * * * * * * * * * * * * * * 0 * * 26 264 * 2582 * * * * 2498 0 0 T 27 * * * 2143 * * * * * * * * * * * 1904 982 * * * 27 370 * 2143 * * * 0 2269 0 1000 F 28 * * * 1544 606 * * * * * * * * * * * * * * * 28 0 * * * * * 0 1898 0 1493 G 29 * * * 2469 * 1070 * * * * * * 1544 * * * * * * * 29 0 * * * * 0 * 1898 0 1493 N 30 * * 1855 * * * * 2184 * * * 1644 * * * * 2445 * * * 30 0 * * * * * * 2498 0 0 S 31 2184 * * * * * * * * 2445 * 2582 * * * 1220 * * * * 31 0 * * * * * * 2498 0 0 E 32 * * * 706 * * * * * * * 2184 * * * 2582 * * * * 32 0 * * * * * * 2498 0 0 K 33 2582 * * 2445 * * * * 1220 * * * * * * 2184 * * * * 33 0 * * * * * * 2498 0 0 P 34 * * * * * 2445 * * * * * * 997 * * 1664 * * * * 34 0 * * * * * * 2498 0 0 E 35 * * 3058 918 * * * * * 2582 * * * 2445 * * * * * * 35 0 * * * * * * 2498 0 0 T 36 * * * * * * * * * * * * * * * 2184 359 * * * 36 359 2184 * 1585 585 * * 2498 1000 0 M 37 * * * * 1369 * * * * * 1220 2445 * * * * * * * * 37 0 * * * * * * 2498 0 0 T 38 * * 2184 * * * * * * * * 2582 * * * 2445 3259 1622 * * 38 293 2445 * 0 * * * 2498 1000 0 C 39 * 0 * * * * * * * * * * * * * * * * * * 39 0 * * * * * * 2498 0 0 R 40 * * * * * * * * 809 * * * * * 1220 * * * * * 40 0 * * * * * * 2498 0 0 L 41 * * * * * * * * * 0 * * * * * * * * * * 41 0 * * * * * * 2498 0 0 S 42 * * * 2582 * * * * * * * * * * * 623 2445 * * * 42 0 * * * * * * 2498 0 0 N 43 * * * * * * 2582 * 2184 * * 1693 * * * 1719 * * * * 43 0 * * * * * * 2498 0 0 N 44 * * 2184 * * * * * * * * 359 * * * * * * * * 44 264 2582 * 1000 1000 * * 2498 1000 0 Q 45 * * * * * * 1309 * * * * * * 1220 2582 * * * * * 45 0 * * * * * * 2498 0 0 R 46 * * * 2582 * * * * * * * * * * 264 * * * * * 46 0 * * * * * * 2498 0 0 Y 47 * 3192 * * 3058 * * 1369 * * * 2445 * * * * * * * 2323 47 185 3058 * 2000 415 * * 2498 1000 0 L 48 * * * * * 3058 * 2445 * 522 * * * * * * * * * * 48 0 * * * * * * 2498 0 0 F 49 * * 3058 * 1881 * * * 2184 1842 * * * * * * * 3192 * * 49 264 2582 * 0 * * * 2498 1000 0 L 50 * 2582 * * 2445 3058 * * * 918 * * * * * * * * * * 50 359 2184 * 2585 263 * * 2498 1000 0 D 51 * * 746 * * * * * 2184 * * 2445 * * * * * * * * 51 0 * * * * * * 2498 0 0 G 52 2184 * 2445 * * 746 * * * * * * * * * * * * * * 52 0 * * * * * * 2498 0 0 D 53 * * 293 2445 * * * * * * * * * * * * * * * * 53 0 * * * * * * 2498 0 0 S 54 1369 * * * * 3058 * * 2445 * * * * * * 1693 * * * * 54 293 2445 * 3585 126 * * 2498 1000 0 H 55 * * * * * * 706 * * * * 2184 * * * * * * * 2582 55 0 * * * * * * 2498 0 0 Y 56 * * 2445 * * * 2582 * * * * * 2184 * 2123 * * * * 2323 56 0 * * * * * * 2498 0 0 E 57 * * * 746 * * * * * * * * 1309 * * * * * * * 57 706 1369 * 0 * * * 2498 1494 0 I 58 * * * * * * * 522 * * * * * * * * * 1719 * * 58 0 * * * * * * 2498 0 0 E 59 2445 * * 746 * * * 2184 * * * * * * * * * * * * 59 0 * * * * * * 2498 0 0 I 60 * * * * * * * 1693 * 809 * * * * * * * 3058 * * 60 0 * * * * * * 2498 0 0 V 61 1622 * * * * * * * * 2445 * * * * * 1369 * 3259 * * 61 0 * * * * * * 2498 0 0 H 62 * * * * * * 1693 * 2184 * * * * * 1800 2445 * * * * 62 0 * * * * * * 2498 0 0 I 63 * * * * * * * 990 * 1369 * * * * * * * 3192 * * 63 0 * * * * * * 2498 0 0 S 64 3058 3192 * * * * * * * 2184 * * * 2445 * 2323 * 2582 * * 64 0 * * * * * * 2498 0 0 T 65 3058 * * 2184 * * * * * * * 2445 * * * 2582 1693 * * * 65 0 * * * * * * 2498 0 0 V 66 * * * * * * * 2184 * 2445 * * * * * * * 746 * * 66 0 * * * * * * 2498 0 0 Q 67 * * * * * * * * 2184 * * * * 359 * * * * * * 67 0 * * * * * * 2498 0 0 I 68 * * * * 2184 * * 2225 * 2582 1719 * * * * * * 3390 * * 68 0 * * * * * * 2498 0 0 L 69 * * * * * * * 1369 * 1220 2445 * * * * * * * * * 69 0 * * * * * * 2498 0 0 T 70 2582 * * * * * * 2184 * * * * * * * * 706 * * * 70 293 2445 * 0 * * * 2498 1000 0 E 71 * * 2582 706 * * * * * * * * * * * * 2184 * * * 71 264 * 2582 * * * * 2498 0 0 G 72 2143 * 1904 * * 982 * * * * * * * * * * * * * * 72 0 * * * * * 0 2269 0 1000 F 73 * * * * 1444 * * * * 2849 * 2143 * * * 1904 * * * * 73 0 * * * * * 0 2269 0 1000 P 74 * * * * * 1904 * * * * * * 1412 * * * 2937 2143 * * 74 0 * * * * * 0 2269 0 1000 P 75 * * 1904 * * * * * * * * 2143 982 * * * * * * * 75 0 * * * * * 0 2269 0 1000 G 76 1904 * * * * 448 * * * * * * * * * * * * * * 76 216 2849 * 4000 93 0 * 2269 1000 1000 G 77 3192 * * * * 889 2445 * * * * 2582 * * * * * * * * 77 0 * * * * * * 2498 0 0 G 78 * * * * * 1220 * * * * * * 2582 * * * 2184 2445 * * 78 0 * * * * * * 2498 0 0 N 79 * * 2582 * * * * 2445 * * * 1644 * 2184 * 3192 * * * * 79 0 * * * * * * 2498 0 0 A 80 1644 * 2582 * * * * * 2184 * * * 2445 * * * 3192 * * * 80 0 * * * * * * 2498 0 0 R 81 * * * * * * * * 2445 * * * * * 746 * 2184 * * * 81 0 * * * * * * 2498 0 0 A 82 706 * * * * * * * * * * * 2184 * * * * 2582 * * 82 0 * * * * * * 2498 0 0 T 83 2184 * * * * * * 3058 * * * * * * * 2582 1693 2445 * * 83 0 * * * * * * 2498 0 0 G 84 * * * * * 293 * * * * * * * * * * 2445 * * * 84 0 * * * * * * 2498 0 0 M 85 * * * * 2184 * * 1512 * * 1220 * * * * * * * * * 85 0 * * * * * * 2498 0 0 F 86 * * * * 3259 * * 2582 2184 1771 * * * * * 3390 3058 * * * 86 0 * * * * * * 2498 0 0 L 87 * * * * * * * 2184 * 746 * * * * * * * * * 2445 87 0 * * * * * * 2498 0 0 Q 88 * * * * * * * * 1512 * * * * 1220 * * 2184 * * * 88 0 * * * * * * 2498 0 0 Y 89 * * * * * * * * * * * * * * * * * * * 0 89 293 * 2445 * * * * 2498 0 0 T 90 * * * * * * * * 1072 * * * * * * * 931 * * * 90 0 * * * * * 0 2202 0 1000 V 91 * * 1920 2243 * * * * * * * * * * * * 1918 1945 * * 91 0 * * * * * 0 2202 0 1000 P 92 * * * 1920 * * * * * * * * 931 * 2243 * * * * * 92 0 * * * * * 0 2202 0 1000 G 93 2243 * * 1920 * 931 * * * * * * * * * * * * * * 93 342 * 2243 * * 0 * 2202 0 1000 T 94 1384 * 1904 * * * * 2143 * * * * * * * * 3022 * * * 94 0 * * * * * 0 2269 0 1000 E 95 * * 1555 1350 * * * * * * * * * * * 1904 * * * * 95 0 * * * * 0 * 2269 0 1000 G 96 1602 * * 1512 * 1644 * * * * * * * * * * * * * * 96 0 * * * * * * 2498 0 0 V 97 3192 * * * * * * 2184 * 3058 2445 * * * * * * 1447 * * 97 0 * * * * * * 2498 0 0 T 98 3192 * * * * * * * * * 2582 * * * 2445 * 889 * * * 98 0 * * * * * * 2498 0 0 Q 99 * * * 1512 * * 2184 * * * * * * 1220 * * * * * * 99 359 2184 * 0 * * * 2498 1000 0 L 100 * * * * * * * * * 623 * * * * * * * 1512 * * 100 0 * * * * * * 2498 0 0 K 101 * * * * * * * 2184 1447 * * * * * 3192 * 1719 * * * 101 0 * * * * * * 2498 0 0 L 102 * * * * * * * * * 293 2445 * * * * * * * * * 102 0 * * * * * * 2498 0 0 T 103 * * * * * * 2582 * * * 3192 * * * 2184 * 990 * * * 103 0 * * * * * * 2498 0 0 V 104 490 * * * * * * * * * * * * * * * * 1796 * * 104 0 * * * * * * 2498 0 0 V 105 * * * * * 1622 * 2582 * * * * 2445 * * * * 1624 * * 105 0 * * * * * * 2498 0 0 E 106 * * 2445 623 * 2582 * * * * * * * * * * * * * * 106 0 * * * * * * 2498 0 0 D 107 * * 706 * * * * * * * * * 2184 * * * 2582 * * * 107 359 * 2184 * * * * 2498 0 0 V 108 1283 * * * * * * * * * * * * * * 1131 * 2916 * * 108 0 * * * * * 0 2083 0 1000 T 109 * * 2755 2172 * * * * * * * 3014 * * * 1420 2916 * * * 109 386 * 2092 * * * 0 2083 0 1000 V 110 1126 * * * * 1436 * * * * * * * * * * * 2538 * * 110 0 * * * * * 0 1739 0 1644 G 111 * * * 1758 * 2538 * * * * * * * * * 910 * * * * 111 0 * * * * 1035 966 1739 0 1644 R 112 * * * * * * * * 1470 * * * * * 646 * * * * * 112 0 * * * * 0 * 2083 0 1000 R 113 * * * * * * * * 809 * * * * * 1220 * * * * * 113 0 * * * * * * 2498 0 0 Q 114 * * * * * * * * * * * * * 706 * 1369 * * * * 114 0 * * * * * * 2498 0 0 A 115 1582 * * * * 2582 * * * * * * * * * 1003 * * * * 115 0 * * * * * * 2498 0 0 V 116 3192 * * * * * * 2445 * 1369 * * * * * * 2215 3259 * * 116 0 * * * * * * 2498 0 0 A 117 359 * * * * * * * * * * * 2184 * * * * * * * 117 0 * * * * * * 2498 0 0 W 118 * * * * * * * * * * * * * * * * * * 0 * 118 0 * * * * * * 2498 0 0 L 119 * * * * * * * 1512 * 623 * * * * * * * * * * 119 0 * * * * * * 2498 0 0 V 120 1024 * * * * * * * * * * * * * * 2184 * 1796 * * 120 0 * * * * * * 2498 0 0 A 121 359 * * * * * * * * * * * * * * 2184 * * * * 121 0 * * * * * * 2498 0 0 M 122 * * * * 2184 * * * * 2445 746 * * * * * * * * * 122 0 * * * * * * 2498 0 0 H 123 * * * * * * 1220 * * * * * * 809 * * * * * * 123 0 * * * * * * 2498 0 0 K 124 * * * * * * * * 264 * * * * * 2582 * * * * * 124 0 * * * * * * 2498 0 0 A 125 0 * * * * * * * * * * * * * * * * * * * 125 0 * * * * * * 2498 0 0 A 126 2155 * * * * * * 1369 * * * * * * * * 3192 3390 * 2445 126 0 * * * * * * 2498 0 0 K 127 * * * * * * * * 0 * * * * * * * * * * * 127 0 * * * * * * 2498 0 0 L 128 * * * * * * * * * 706 1369 * * * * * * * * * 128 0 * * * * * * 2498 0 0 L 129 * * * * * * * * * 0 * * * * * * * * * * 129 0 * * * * * * 2498 0 0 Y 130 * * * * 1369 * * * * * * 2445 * * * * * * * 1220 130 0 * * * * * * 2498 0 0 E 131 * * * 0 * * * * * * * * * * * * * * * * 131 0 * * * * * * 2498 0 0 S 132 1018 * * * * * * * * * * * * * * 982 * * * * 132 0 * * * * * * 2269 0 0 R 133 * * * * * * * * 2143 * * * * * 370 * * * * * 133 0 * * * * * * 2269 0 0 D 134 * * 448 * * * * * * * * 1904 * * * * * * * * 134 533 1694 * 0 * * * 2269 1000 0 Q 135 * * * * * * * * * * * * * 0 * * * * * * 135 0 * * * * * * 1757 0 0 S 136 * * * 1091 * * * * * * * * * * * 914 * * * * 136 0 * * * * * * 1533 0 0 G 137 * * * * * 914 * * * 1091 * * * * * * * * * * 137 0 * * * * * * 1533 0 0 P 138 * * * * * * * * * * * * 0 * * * * * * * 138 0 * * * * * * 1533 0 0 S 139 * * * * * * * * * * * * * * * 0 * * * * 139 0 * * * * * * 1533 0 0 S 140 * * * * * * * * * * * * * * * 0 * * * * 140 0 * * * * * * 1000 0 0 G 141 * * * * * 0 * * * * * * * * * * * * * * 141 0 * * 0 * * * 1000 0 0 //