HHsearch 1.5 NAME c2ro5B_ FAM FILE c2ro5B_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2ro5B_.a3m DATE Thu Mar 11 01:08:45 2010 LENG 55 match states, 55 columns in multiple alignment FILT 40 out of 44 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4474 1.7550 SEQ >ss_dssp CCCCCCCCCCCSSCCCCCCHHHHHHHTCCTTCCCEEEECSSSCEEEECSTTTTTC >sa_dssp EEEEEEEDEECEEDEDECCEDCCEECECEECBCDDEDEDEEECDDCBCEECEEEE >ss_pred CCCCEEEEEECCCCCEEECHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCC >ss_conf 9640237764125859711888865198999768999918985999952645579 >Consensus MKxtGiVRxiDxLGRiViPkelRkxlxixexdxlEifvxxdxxIilkkYxPxxxx >c2ro5B_ MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPISEL >UniRef50_C9RBL0(1-52:83) Transcriptional regulator, AbrB family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBL0_AMMDK E=2e-05 s/c=0.97 id=48% cov=95% MKVFVSMREIDELGRVTLPAELRRSLGWGPGTPLELFIDEaKGEIVLRLYEP---- >UniRef50_C9S1A7(1-49:82) Transcriptional regulator, AbrB family n=3 Tax=root RepID=C9S1A7_GEOSY E=0.0001 s/c=0.98 id=51% cov=89% MKPLGIVRRIDHLGRITIPMEIRRVHGWNTGTPIEMFATDKG-LLLREY------ >UniRef50_C0ES52(29-78:116) Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ES52_9FIRM E=1e-12 s/c=1.48 id=51% cov=93% MQSTGIVRKLDSLGRITLPMELRKSFDIGEREPLEIFTEED-KIIIKKYNP---- >UniRef50_C8WTC4(1-50:83) Transcriptional regulator, AbrB family n=3 Tax=Alicyclobacillus acidocaldarius RepID=C8WTC4_ALIAD E=4e-11 s/c=1.39 id=51% cov=93% MLVTGYVRKVDHLGRLVIPKRLRKDLAIGQDDSIEIYVEGDA-VVLSKYEP---- >UniRef50_C6CZ93(1-50:83) Transcriptional regulator, AbrB family n=4 Tax=Bacillales RepID=C6CZ93_PAESJ E=4e-11 s/c=1.39 id=49% cov=93% MKPAGVVRKVDQLGRIVLPKSLRKRYQMNEGDPVEILVQGD-HIILERYRP---- >UniRef50_A8F9W2(12-54:100) Transcription regulator n=2 Tax=Bacillus pumilus RepID=A8F9W2_BACP2 E=0.0004 s/c=1.07 id=43% cov=80% -----YVRYIDNVGRVVLPTDIRKRLKIHPRDFMEIYREED-QIVIKPY------ >UniRef50_C8WYE1(3-51:90) Transcriptional regulator, AbrB family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WYE1_ALIAD E=5e-09 s/c=1.27 id=46% cov=91% -KSVGIVRNLDALNRVILPKSLRDTLGILPHSSVEAFIDGD-RIVLRKYAP---- >UniRef50_UPI0001C3571A(1-50:98) AbrB family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3571A E=9e-09 s/c=1.23 id=51% cov=93% MNSTGIIRRIDDLGRVVVPRDMRKSFGLQEGTPLEVCATEEG-ILFKKYDP---- >UniRef50_C4G0V6(1-51:86) Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0V6_ABIDE E=2e-06 s/c=1.05 id=37% cov=95% MKNIVLTRRLDKLGRITIPANLRKSLNINDSEELEIITGANNIIIRKQINP---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 2765 0 0 K 2 * * * * * * * * 208 4605 * 4612 * 5250 5273 * * * * * 2 0 * * * * * * 2825 0 0 A 3 1837 * * * * * * * * * * 3420 3507 * 4591 1407 4998 3493 * * 3 0 * * * * * * 2825 0 0 T 4 4605 * * * 4422 * * 3560 * 4524 * * * * 4776 3919 669 4259 * * 4 0 * * * * * * 2859 0 0 G 5 * * * * * 171 * * * * * * * * * * * 3163 * * 5 0 * * * * * * 2859 0 0 I 6 * * * * * * * 921 * 4001 3029 * * * * 4495 * 2607 * 3675 6 0 * * * * * * 2952 0 0 V 7 * * * * * * * 2765 5449 * 4495 * * * * * 3443 528 * * 7 0 * * * * * * 2952 0 0 R 8 * * * * * * * * * * * * * * 0 * * * * * 8 0 * * * * * * 2952 0 0 R 9 * * * 4495 * 4559 3710 * 1582 * * 4350 * * 1278 * * * * 4597 9 0 * * * * * * 2952 0 0 I 10 5082 * * * * * * 1198 * 1993 4897 * * * * * * 2002 * * 10 0 * * * * * * 2952 0 0 D 11 * * 0 * * * * * * * * * * * * * * * * * 11 0 * * * * * * 2952 0 0 D 12 4350 * 2174 2055 * 4511 3683 * 4001 * * 4181 4412 3697 * 2996 * * * * 12 0 * * * * * * 2952 0 0 L 13 * * * * * * * * * 106 5082 * * * * * * 4597 * * 13 0 * * * * * * 2952 0 0 G 14 * * * * * 73 * * * * * 4350 * * * * * * * * 14 0 * * * * * * 2952 0 0 R 15 * * * * * * * * * * * * * * 33 * * * 5449 * 15 0 * * * * * * 2952 0 0 V 16 * * * * * * * 980 * 3544 * * * * * * * 1295 * * 16 0 * * * * * * 2952 0 0 V 17 * * * * * * * 4350 * * * * * * * * 2337 409 * * 17 0 * * * * * * 2952 0 0 I 18 * * * * * * * 928 * 1256 * * * * * * * 4171 * * 18 0 * * * * * * 2952 0 0 P 19 * * * * * * * * * * * * 0 * * * * * * * 19 0 * * * * * * 2952 0 0 K 20 3227 * * * * * * 3623 864 * 2899 * * * 4227 4891 4597 * * * 20 0 * * * * * * 2952 0 0 E 21 * * 3711 440 * * * * * * * 4001 * * 4758 3518 * * * * 21 0 * * * * * * 2952 0 0 I 22 * * * * * * * 1543 * 1029 3001 * * * * * 4581 * * * 22 0 * * * * * * 2952 0 0 R 23 * * * * * * * * * * * * * * 0 * * * * * 23 0 * * * * * * 2952 0 0 R 24 * * 3532 * * * * * 858 * * * * * 1753 * 3937 * * * 24 0 * * * * * * 2952 0 0 T 25 * * 4758 * * * * 5387 * 4441 * 4974 * 5327 3652 1689 1700 2848 * * 25 0 * * * * * * 2952 0 0 L 26 * * * * 4129 * 4611 * * 564 3355 * * 4624 * * * * * 3522 26 0 * * * * * * 2952 0 0 R 27 4758 * 2432 4451 * 1878 3885 * 3046 * * 3185 * 4709 3329 5415 * * * * 27 0 * * * * * * 2952 0 0 I 28 * * * * * * * 614 * 2309 4709 * * * * * * 5560 3552 * 28 0 * * * * * * 2952 0 0 R 29 4607 * 3204 * * 3235 4030 * 2537 4306 * 2420 5607 3530 3764 * * 3938 * 5196 29 28 5710 * 2322 322 * * 3020 1000 0 E 30 * * 3364 998 * * * 4696 * * * 4612 2843 4734 5780 * 3340 5117 * * 30 0 * * * * * * 3020 0 0 G 31 5765 * 3601 4866 * 1226 4306 * 2266 * * 4848 * * 3941 3660 * * * * 31 0 * * * * * * 3020 0 0 D 32 5475 * 1057 3063 * * * * * * 5538 * * 4866 * 3488 2105 * * * 32 0 * * * * * * 3020 0 0 P 33 4067 * * 3964 4553 5117 * * 4479 4866 * * 1084 4848 * 2190 * * * * 33 0 * * * * * * 3020 0 0 L 34 * * * * * * * 2642 * 631 3839 * * * * * * 3009 * * 34 0 * * * * * * 3020 0 0 E 35 * * * 0 * * * * * * * * * * * * * * * * 35 0 * * * * * * 3020 0 0 I 36 4306 * * * 4337 * * 530 * 4437 3226 * * * * * * 4207 * * 36 40 * 5196 * * * * 3020 0 0 F 37 * 4790 * * 866 * * 3920 * 4658 * 4843 * * * * 5094 * * 2027 37 35 * 5374 * * 0 * 3006 0 1000 V 38 3660 * * * * * * 2386 * * * * * * 4544 * 2104 1139 * * 38 149 * 3345 * * 0 * 3016 0 1000 D 39 5935 * 1562 1438 * 3826 * * 5011 * * 5256 * 4526 * * 3256 * * * 39 157 * 3282 * * 0 * 2853 0 1819 R 40 3859 * 4064 1809 * 1879 * * 3994 * 4755 4588 * 4933 3607 * * 4974 * 5266 40 72 4367 * 0 * 0 * 3001 1000 1685 D 41 * * 682 2416 * 5710 * * 3235 * * 3964 * * * * * * * * 41 524 * 1716 * * * * 3020 0 0 G 42 3105 4956 3711 * * 1315 * * 4905 * * 3074 * 4442 4535 2921 * * * * 42 499 * 1773 * * 0 * 2784 0 2353 E 43 * 4899 4533 2222 * 4099 4432 3774 2944 * * 4589 * 3031 2868 4678 4029 * * * 43 0 * * * * 0 * 2863 0 2238 V 44 * * * * * * * 428 * 4585 * * * * * * * 2217 * * 44 0 * * * * * * 3020 0 0 I 45 * * * * * * 4848 939 * 3284 3892 * * * * * * 1869 * * 45 0 * * * * * * 3020 0 0 L 46 * * * * 4212 * * 3468 * 497 4848 * * * 3964 * * 4377 * * 46 0 * * * * * * 3020 0 0 K 47 * * * 4681 * * * * 862 * * * * 4020 1844 4734 4918 * * * 47 0 * * * * * * 3020 0 0 K 48 * * * 4585 * * * * 516 4437 * * 3724 3964 3771 * * * * * 48 0 * * * * * * 3020 0 0 Y 49 * * * * 3738 * 4343 3896 * * * * * * * * * * * 307 49 58 4675 * 0 * * * 2884 1000 0 S 50 3257 * 3042 2433 * * * * 5615 5204 * 3293 * 4292 3278 1908 * 5744 * * 50 0 * * * * * * 2812 0 0 P 51 * * * * * * * * * * * * 114 * * * * 3719 * * 51 0 * * * * * * 2716 0 0 I 52 3317 * * * 3728 * * 1467 * 2317 2579 * * * * * 3405 * * * 52 0 * * * * * * 1959 0 0 S 53 * * * * * 1026 * * * * * * 3139 3541 * 1693 * * * * 53 0 * * * * * * 1959 0 0 E 54 2900 * 2204 912 * * * * 3088 * * * * * * * * * * * 54 0 * * * * * * 1787 0 0 L 55 * * * * * * * * * 361 2177 * * * * * * * * * 55 0 * * 0 * * * 1637 0 0 //