HHsearch 1.5 NAME c2rnnA_ FAM FILE c2rnnA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2rnnA_.a3m DATE Tue Mar 9 03:10:27 2010 LENG 114 match states, 114 columns in multiple alignment FILT 106 out of 187 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.9 EVD 0.4050 -0.4361 SEQ >ss_dssp CCSSCCGGGSSCCCCCCCSSSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHTCC CCCHHHHHHHHHHC >sa_dssp EEEEEDEEEEEEEEEEEDEEEDDEECEEDADDBBEEADEBDEDBBDCAAEBBECEEEDEECDACCDADDCACDACDEEECDDDDCCAADBABDCBEEECE DDECEECCDDDEEE >ss_pred CCCEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC CCCHHHHHHHHHCC >ss_conf 9621113431144799977565451013489999999968699999999985988878789999999999984103576773157899999999874888 88899999996319 >Consensus xxxxxxxxdxxxxxxpxpxrxxxxxlxxexxxtxxxlxxLkVxeLKxxlrxxgLxxsGxKaeLidRlxxxlexxxxxxxxdxxxlxAirxLIxkxxxxxx lPxyxxlxxalrtG >c2rnnA_ GSHMINLEDYWEDETPGPDREPTNELRNEVEETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKNEP LPVYKDLWNALRKG >UniRef50_Q9ULH7(363-424:1088) MKL/myocardin-like protein 2 n=18 Tax=Amniota RepID=MKL2_HUMAN E=5e-12 s/c=1.16 id=32% cov=44% -----------NNATPNTPRQNTSTPVRKPGPLPSSLDDLKVSELKTELKLRGLPVSGTK---------------------------------------- -------------- >UniRef50_P45951(82-170:536) Apurinic endonuclease-redox protein n=18 Tax=Embryophyta RepID=ARP_ARATH E=0.0004 s/c=0.52 id=26% cov=78% ------------------DRDEMGTLQDDRKE----IEAMTVQELRSTLRKLGVPVKGRKQELISTLRLHMDSNLPDQKETSSSTRSDSVTIKRKISNRE EPTEDECTNS---- >UniRef50_UPI000023F1E1(10-82:466) hypothetical protein FG02507.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023F1E1 E=7e-11 s/c=0.94 id=30% cov=55% -------------------------LRQEAAALARQVNRLLNRQLSSVCQVNGVKSTGIKAELQGRIHNLIQEAV--NANDPVRLQQIR----------- -------------- >UniRef50_C5DEP0(45-126:266) KLTH0C10824p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DEP0_LACTC E=6e-09 s/c=0.75 id=29% cov=52% -----------------PKKDHTTLLSNDK---LATFNVMSLKALKNECRTRGLKISGRKGELVDRILAFETSGSLSG---------------------- -------------- >UniRef50_C4Y642(5-102:1174) Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y642_CLAL4 E=5e-20 s/c=1.01 id=28% cov=76% --------------------------EDDLHATLVQLTQLKVPQLKELCKSTGLAQKGKKQDLIDRLAQFV-NACAASR-EKSLLLAVRTVVLKALNNDP IPNFSSLSTVLRTG >UniRef50_A2G4A6(56-151:391) SAP domain containing protein n=4 Tax=Trichomonas vaginalis RepID=A2G4A6_TRIVA E=2e-05 s/c=0.52 id=28% cov=50% ------------------------------------ISLLSITQLRDLLRDYSLPTGGNKHVLVNRLIIFLET---IGQSQQNLLSAFSAKLKKL----- -------------- >UniRef50_Q4N0G6(8-57:116) Putative uncharacterized protein n=1 Tax=Theileria parva RepID=Q4N0G6_THEPA E=0.0005 s/c=0.91 id=24% cov=30% -------------------------------------ENMTIPELKAALAKNNLETTGKRADLVSRLSNY------------------------------ -------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1000 0 0 H 3 * * * * * * 0 * * * * * * * * * * * * * 3 0 * * * * * * 1533 0 0 M 4 * * * * * * * * * * 980 * * * * 1020 * * * * 4 0 * * * * * * 1533 0 0 I 5 * * * * * * * 980 * 1020 * * * * * * * * * * 5 0 * * * * * * 1533 0 0 N 6 * * * * * * * * * 1020 * 980 * * * * * * * * 6 0 * * * * * * 1533 0 0 L 7 * * * * * * * * * 0 * * * * * * * * * * 7 0 * * * * * * 1533 0 0 E 8 * * * 552 * * * * * 1654 * * * * * * * * * * 8 0 * * * * * * 1973 0 0 D 9 * * 0 * * * * * * * * * * * * * * * * * 9 0 * * * * * * 1973 0 0 Y 10 * * * * * * * * * * * * * * 1503 * 1654 * * 1602 10 0 * * * * * * 1973 0 0 W 11 * * * * * * * * * 1654 * * * * * * * 1503 1602 * 11 0 * * * * * * 1973 0 0 E 12 * * * 552 * * * * * * * * 1654 * * * * * * * 12 0 * * * * * * 1973 0 0 D 13 * * 780 * * * * * * * * 2335 * * * 2189 * * * * 13 320 * 2329 * * * * 2563 0 0 E 14 * * 2389 1273 * * * * * * * * * * * 1339 * * * * 14 0 * * * * 0 * 2610 0 1000 T 15 2022 * * * * * * 2969 * * * * * * * 1342 2111 * * * 15 0 * * * * * * 3131 0 0 P 16 * * * * * * * * * * * * 389 * * 2080 * * * * 16 138 * 3459 * * * * 3404 0 0 G 17 2079 * * 3147 * 1721 * * * * * 2922 * * * 2217 * * * * 17 0 * * * * 0 * 3671 0 1000 P 18 3819 * * * * * * * * * * * 584 * 3365 3498 * 3705 * * 18 113 3734 * 1585 585 * * 3933 1000 0 D 19 3890 * 1863 * * * * * 2661 * * 3513 * 3974 * 1900 3637 * * * 19 0 * * * * * * 4137 0 0 R 20 * 3748 * * * * * * 3791 * * 3898 * 3513 1028 2263 * * * * 20 0 * * * * * * 4137 0 0 E 21 * * 1902 1883 * * * * 3726 * * * * 2767 * 2490 4038 * * * 21 0 * * * * * * 4226 0 0 P 22 2925 * * 2863 * 2039 3884 * * * * 3971 2504 * * 2475 * * * * 22 0 * * * * * * 4226 0 0 T 23 2917 * * * * * * * 3588 4081 3893 3953 3851 3726 * 3971 1378 * * * 23 0 * * * * * * 4226 0 0 N 24 * * * 2861 * 2505 * * * * * 1520 * 3220 * 4167 2519 * * * 24 80 4207 * 0 * * * 4394 1000 0 E 25 4195 * * 2146 * * * * 2882 3204 * * 2449 3079 * 4247 3045 * * * 25 0 * * * * * * 4394 0 0 L 26 2869 4228 * * * * * 3066 * 1304 * * * * * 4609 2972 3096 * * 26 70 4398 * 3170 170 * * 4660 1000 0 R 27 * * * 3099 * * 3850 5010 3940 * 4759 4552 3559 2757 2286 3125 3543 * * * 27 0 * * * * * * 4685 0 0 N 28 5086 * 3019 * * 5234 4357 * 4062 5129 * 2648 4346 2232 5162 3483 3515 4934 * 5361 28 0 * * * * * * 4829 0 0 E 29 * * 1987 1166 * * * * 3102 * * 3972 5297 4469 * 5159 * * * 5432 29 153 5360 3713 2000 415 * * 4902 1000 0 V 30 3184 * * * 4446 * * 2220 4884 3085 3672 3305 3028 5383 5262 * * 3357 * 5164 30 50 * 4884 * * 500 1772 4888 0 2097 E 31 3275 * 3441 2752 * 5569 3759 * 2192 5547 4680 * 4643 2953 * 3952 5801 5046 * * 31 0 * * * * * 0 4820 0 1623 E 32 3165 * 1656 2499 5263 * * * 5048 4576 * * * 3722 4346 3534 4285 4899 * * 32 69 5291 5557 3807 107 * 0 4823 1000 1623 T 33 3226 5276 * 5015 * * * * * 2898 4889 * 3577 * 5000 4899 1279 3911 * 4597 33 0 * * * * 1533 612 4817 0 1997 I 34 3207 5832 4701 * * * * 2028 3508 2787 4100 5410 4023 * 3465 * 4139 3898 * * 34 0 * * * * 1037 964 4841 0 1542 T 35 2397 * 4010 5385 * 3617 5876 * 3375 5605 * 3283 * 4508 2855 4167 2772 5520 * * 35 44 * 5068 * * * 0 4851 0 1000 L 36 2550 5424 3756 3473 * * * * 5570 3627 * 5620 4670 2972 2730 3731 3803 4181 * * 36 22 6035 * 3459 138 0 * 4811 1000 1627 M 37 * * * * 3764 * * 3061 * 885 4147 * * * 5131 * * 3553 4019 4909 37 0 * * * * * * 4548 0 0 E 38 4540 * 3822 1588 * * 6062 * 3637 * * 2797 4983 3785 4295 3069 5446 * * 5861 38 0 * * * * * * 4563 0 0 L 39 3530 * 4369 6562 * * 6530 4753 2250 3085 5989 4696 * 3869 3220 2696 3952 6052 * 6124 39 0 * * * * * * 4554 0 0 L 40 5684 6547 * * 4257 * * * 6044 743 1984 * * 5996 6453 * * 6137 * 6516 40 0 * * * * * * 4416 0 0 K 41 * * * * * * * * 1073 4918 * 5066 5727 4933 2883 4647 2092 * * * 41 0 * * * * * * 4417 0 0 V 42 * 5993 * * * * * 3303 6443 4399 6122 3765 * * 4884 * 5786 548 * * 42 28 5707 * 1000 1000 * * 4411 1000 0 S 43 1803 * 4817 6446 * 6151 * 6356 3727 7052 * 4056 3296 4334 5478 2684 4223 3979 * 4304 43 0 * * * * * * 4412 0 0 E 44 5378 * 2509 1305 * * * 6543 6181 * * 6497 * 1884 7038 5708 5702 4541 * * 44 0 * * * * * * 4412 0 0 L 45 * 5417 * * * * * 4000 * 130 * * * * * * * * * * 45 0 * * * * * * 4412 0 0 K 46 6638 * * * * * * * 430 * * 5199 * 4435 3066 5478 4952 * * * 46 0 * * * * * * 4412 0 0 D 47 2552 * 2228 2482 * 6540 * 5737 4401 5242 * 3765 5788 3503 6417 3923 4415 5672 * 6676 47 0 * * * * * * 4412 0 0 I 48 4800 6584 * 2317 4463 * 5150 2489 5302 2455 5116 * * 5123 6885 * 5476 3101 * 3498 48 0 * * * * * * 4412 0 0 C 49 5926 1391 * * * * * * * 802 * * * * * 6368 * 5910 * * 49 0 * * * * * * 4412 0 0 R 50 4344 * * 5435 * 5558 5664 * 1695 * 6123 * * 4573 1015 6933 5745 * * * 50 0 * * * * * * 4412 0 0 S 51 2914 5025 4743 3934 * 5788 6968 6035 2139 5748 5417 * * 4924 3061 2400 4223 5172 * * 51 0 * * * * * * 4412 0 0 V 52 4769 5602 * 5204 3867 * 3693 4651 5438 3013 3990 3981 * 4709 1758 5788 6215 4710 * 4237 52 0 * * * * * * 4412 0 0 S 53 * 6742 4632 6047 * 915 * * 4092 4517 * 2583 * 5140 5327 3602 * * * * 53 0 * * * * * * 4412 0 0 F 54 6865 * * 6135 4761 * * 4789 * 400 6758 * * 5203 5271 * * 3805 * 6339 54 0 * * * * * * 4412 0 0 P 55 3348 * 5055 6427 * 6901 * * 2234 5381 * 6726 1479 6660 3128 3509 4848 * * * 55 0 * * * * * * 4412 0 0 V 56 5054 * 6837 5737 * 5862 * 3383 5558 2872 * * * 4883 5063 4178 2187 1587 * * 56 0 * * * * * * 4412 0 0 S 57 4247 * 5154 5364 * 3258 4171 6532 3879 * * 6678 * * * 1385 2314 5009 5708 6339 57 0 * * * * * * 4412 0 0 G 58 * * * * * 0 * * * * * * * * * * * * * * 58 0 * * * * * * 4412 0 0 R 59 4762 5995 * * * * * 5478 1812 4448 * 2894 5730 * 2241 4528 3109 4278 * 5737 59 0 * * * * * * 4412 0 0 K 60 * * * 5998 * * * * 173 * * 4886 * * 3979 * * * * * 60 7 * 7682 * * * * 4412 0 0 A 61 1276 * 5206 4204 * 4815 4625 * 4876 * * 4717 4317 3050 4855 3445 5909 4519 * * 61 0 * * * * * 0 4416 0 1000 V 62 3266 * 1959 1505 * * 6481 5750 * * * 5730 * 3543 * 6724 6062 2969 * * 62 0 * * * * * 0 4400 0 1000 L 63 * * * * * * * 5178 * 108 5567 * * * * * * 5425 * * 63 0 * * * * 0 * 4400 0 1000 Q 64 4727 5666 * * * * 5965 1550 6318 3649 4444 * * 2648 * 6471 * 1857 * * 64 0 * * * * * * 4443 0 0 D 65 4022 * 1382 1817 6150 5137 * * 4890 5673 * 5386 * 4693 * 5255 4041 * 5280 * 65 0 * * * * * * 4439 0 0 L 66 4813 * * * * * * * 5902 5531 * 6450 * * 155 * 5915 * * * 66 0 * * * * * * 4254 0 0 I 67 * * * * * 5310 * 1453 * 943 * * * * * * * 3489 * * 67 0 * * * * * * 4254 0 0 R 68 6514 * 6462 3133 * * 5077 4237 1916 3462 * 6546 * 5079 2169 5289 3689 4583 * 5817 68 0 * * * * * * 4236 0 0 N 69 3894 * 3490 1946 * 5351 * 5830 * 4937 * 3227 3856 2748 4801 3084 5010 * * * 69 0 * * * * * * 4343 0 0 F 70 5763 6152 5097 * 1546 5943 3311 6181 * 4074 5810 * * * 5973 * * 5025 5634 1639 70 0 * * * * * * 4362 0 0 L 71 5110 * * 4109 3411 * * 2326 5531 1247 4084 * * * * 5697 6113 3572 * * 71 49 * 4902 * * * * 4371 0 0 Q 72 5033 * 3763 1450 * * 5389 * 2595 * 6017 * * 2561 4917 4667 3956 5763 * * 72 34 * 5410 * * 1000 1000 4295 0 1553 N 73 5623 5290 4559 4497 * 5283 3702 * 3858 * * 2125 * 3201 5610 1709 4979 * * * 73 62 * 4571 * * 1000 1000 4243 0 1513 A 74 2645 * * 4814 * 2235 * 3745 3272 3937 * 3390 5177 * * 2546 * 4195 * * 74 0 * * * * 975 1025 4095 0 1613 L 75 2944 3531 * * 3656 * * 2685 * 2298 4345 * * * 4532 3129 * 2851 * * 75 154 * 3305 * * * 0 4040 0 1000 V 76 3288 * 4731 4034 * 3347 * 4434 * 4210 * * 2967 * 1953 2939 * 3578 * * 76 138 * 3456 * * 1592 581 3889 0 2212 V 77 3490 * 2314 * 4305 * * 1999 3347 3429 * * 4763 * 3404 4511 * 4543 * * 77 167 * 3195 * * 894 1114 4118 0 2236 G 78 * * 2494 3848 4290 1254 * * * * * 2665 * 3717 * 4357 * * * * 78 0 * * * * 1000 1000 4223 0 2158 K 79 3154 * * 4363 * * 2827 * 3175 * 4638 3457 * 3901 3013 2257 * * * 4155 79 71 * 4375 * * 0 * 4234 0 1511 S 80 * * 3539 3827 * 4491 * 2627 * * * 1868 3888 4252 * 2243 * 4964 * * 80 0 * * * * 0 * 4274 0 1000 D 81 4472 * 618 4513 * * * * * * * * * 2975 * * 2917 * * * 81 0 * * * * * * 4315 0 0 P 82 3961 * 4604 * * * 4898 * 2309 * * 3631 1294 3267 * 3900 * * * * 82 0 * * * * * * 4315 0 0 Y 83 4481 * * 3882 3796 3904 4607 3400 * 4890 * 3949 * * * 3109 * 2331 2616 4770 83 60 4607 * 0 * * * 4306 1000 0 R 84 3064 * * 3882 * 4593 * * 4229 2693 * 3904 * * 1231 3828 * * * * 84 0 * * * * * * 4306 0 0 V 85 * * * * 4593 * * 4678 * 1194 * * 2351 3882 * * 3828 2754 * * 85 0 * * * * * * 4306 0 0 Q 86 * * * * * * 3106 * 2351 1508 * * 3240 3394 3828 3949 * * * * 86 0 * * * * * * 4306 0 0 A 87 608 * * 3882 * * * 3904 * * * * * 4095 * 3828 5201 4229 * * 87 0 * * * * * * 4306 0 0 V 88 4593 * 3828 * 3949 * * 1501 * 2479 * * * * * * 4492 2022 * * 88 0 * * * * * * 4306 0 0 K 89 * * * * * 4229 * * 2443 5051 4926 3226 * * 1128 2887 * * * * 89 0 * * * * * * 4306 0 0 F 90 2457 * * * 4635 * 3831 2359 * * * * * * * 4551 2394 1838 * * 90 105 * 3831 * * * * 4179 0 0 L 91 * * * * * * * 3229 4004 539 * * * * * * 3524 4158 * * 91 0 * * * * 0 * 4038 0 1000 I 92 4646 * * * * * * 946 * 3856 * * * * * 3816 * 1732 * * 92 0 * * * * * * 4179 0 0 E 93 4526 * 4046 3817 3046 * * * 1384 2345 * * * 3745 * * * 4340 * * 93 0 * * * * * * 4179 0 0 R 94 * * * * * * * * 954 * 3340 * * 4340 1575 * * * * * 94 0 * * * * * * 4179 0 0 I 95 1896 3673 * * * * * 3367 2770 3856 * * * * 2195 4852 * 3520 * * 95 0 * * * * * * 4179 0 0 R 96 3073 4144 * * * 3275 * 2903 2822 2028 * * * * 2315 * * * * * 96 0 * * * * * * 4018 0 0 K 97 3688 * * 4057 * * * 4416 3187 2539 * 2241 * 2360 * 3500 * 4685 * * 97 0 * * * * * * 4018 0 0 N 98 * * * * 4273 1326 4093 * * * * 1345 * * * 3362 * * * * 98 0 * * * * * * 4018 0 0 E 99 * * 1354 1843 * * * * * * * * * 4223 2580 4364 * 4037 * * 99 0 * * * * * * 3869 0 0 P 100 * * 4351 2544 * * * * * 4711 * * 1257 2622 * 3082 * 4562 * * 100 0 * * * * * * 3720 0 0 L 101 * * * 3142 * * * 2467 * 750 * * * * * * * 3170 * * 101 0 * * * * * * 3720 0 0 P 102 * * * * * * * * * * * * 100 3894 * * * * * * 102 0 * * * * * * 3720 0 0 V 103 * * * * * * * 3829 2817 * * 1922 * 3448 * 3027 1939 4363 * * 103 0 * * * * * * 3720 0 0 Y 104 * * * 3142 1776 * * * * * * * * * * * * * * 750 104 0 * * * * * * 3720 0 0 K 105 * * 2224 2182 * * * * 3072 * * * * 3441 3026 3149 3072 * * * 105 0 * * * * * * 3720 0 0 D 106 4274 * 2049 2284 * * * 4711 * * 4552 * * 4351 * 2255 2626 * * * 106 0 * * * * * * 3720 0 0 L 107 * 3142 * * * * * 3314 * 842 2760 * * * * * * 3633 * * 107 0 * * * * * * 3720 0 0 W 108 * * * * * * 4172 3441 * 3392 * * * * * 4014 3142 * 1904 1668 108 0 * * * * * * 3720 0 0 N 109 * * 4274 4298 * * 2236 * * 4351 * 1799 * 2634 3829 * 4014 * * 4172 109 0 * * * * * * 3720 0 0 A 110 790 * * * * * * * 3829 * * * * * * 2320 3490 4014 * * 110 0 * * * * * * 3720 0 0 L 111 * * * * * * * 1336 * 845 4401 * * * * * * * * * 111 0 * * * * * * 3323 0 0 R 112 4083 * * 3754 * * * * 2564 * * * * * 694 3649 * * * * 112 0 * * * * * * 3323 0 0 K 113 * * * * 3588 * * * 2767 * * * * * * 2978 637 * * * 113 0 * * * * * * 3249 0 0 G 114 * * * * * 0 * * * * * * * * * * * * * * 114 0 * * 0 * * * 3249 0 0 //