HHsearch 1.5 NAME c2rbgB_ FAM FILE c2rbgB_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2rbgB_.a3m DATE Thu Mar 11 01:25:52 2010 LENG 124 match states, 124 columns in multiple alignment FILT 4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.1 EVD 0.4050 -0.0400 SEQ >ss_dssp CCSEEEEEECCGGGHHHHHHHHHHHHHHHTCSEEEEEEECSSCHHHHHHHTHHHHHTTTTSEEEEEEECGGGHHHHHHHGGGCCCCEEEEEECGGGHHHH HHHHHTSCHHHHHTEEEEESTTCC >sa_dssp EECAAAAAABCDECACEBADCAAECADECEBEEABABABBDBEDEDACEDADCABDDBEEBDDDCDCBCEECCEDACDEBEEDEBCAAAAAABDECCECA BEBBDEBDEDBDEDDDDCDADECE >ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH HHHHHHCCHHHHHHHHHHHHHHCC >ss_conf 9727999951501289999999999962398067554312663799999999997620144306687666899999999875367838999848985239 999973007899999998665309 >Consensus ykxIxxlvxvxxexlxnxfRkxxxDxRxxGskKxiINvisxlxxxexvxxxREAlLdNIDlGxelxxWKxeeVxxmxxkxxxxxvdGlliYCDexnkxxm xKixxxxPxsiKxxiiKdxCkxxx >c2rbgB_ YKNILTLISVNNDNFENYFRKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLENIDIGYELFLWKKNEVDIFLKNLEKSEVDGLLVYCDDENKVFX SKIVDNLPTAIKRNLIKDFCRKLS >UniRef50_C3MU07(6-127:127) Putative uncharacterized protein n=9 Tax=Sulfolobus RepID=C3MU07_SULIM E=3e-22 s/c=0.87 id=41% cov=98% -KPIVVISSTNAEEIPNFIRAMFKDCRLNGSKKLIINFISSISYPEFIQNAREALLDNIDLGAYIYIWKPEEVDQMMKKIleNRQDMKGIIIYCDDNNKY TIEKILHKVPNSIKANIIKDYCK--- >UniRef50_A4YEK5(6-125:125) Putative uncharacterized protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YEK5_METS5 E=4e-40 s/c=1.38 id=37% cov=98% -KAVLVLVQVREETLAEVFRKLMKDARTSGFRKVIINVISPLPHWQVLASAREAILDNIDLGLEVYTWKPEDVKKMFEKASQLSVDGLMTYCDEDNKYSM SKLMSSLPDSLKISMIKDNCK--- >UniRef50_Q4JA32(18-137:140) Conserved protein n=1 Tax=Sulfolobus acidocaldarius RepID=Q4JA32_SULAC E=1e-39 s/c=1.37 id=44% cov=98% YSLIASIVNVTSENLDNFFRRVLTDVRKLGSKKVVVNIITDLKFHEVVGYIREAMLDNIDIGYELHLWKRDEVNKMLDKLLEYNIDGILIYCDEETRPIM IKIYDAFPNKIKAMITKNYC---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Y 1 * * * * * * * * * * * * * * * * * * * 0 1 0 * * * * * * 1464 0 0 K 2 * * * * * * * * 418 * * * * * * 1992 * * * * 2 0 * * * * * * 2109 0 0 N 3 1945 * * * * * * * * 1992 * 2054 2012 * * * * * * * 3 0 * * * * * * 2109 0 0 I 4 * * * * * * * 434 * * * * * * * * * 1945 * * 4 0 * * * * * * 2109 0 0 L 5 1992 * * * * * * * * 998 * * * * * * * 2012 * * 5 0 * * * * * * 2109 0 0 T 6 * * * * * * * * * * * * * * * 1992 2054 978 * * 6 0 * * * * * * 2109 0 0 L 7 * * * * * * * 1002 * 998 * * * * * * * * * * 7 0 * * * * * * 2109 0 0 I 8 * * * * * * * 2054 * * * * * * * 2012 * 968 * * 8 0 * * * * * * 2109 0 0 S 9 * * * * * * * * * * * 1992 * 1945 * 1033 * * * * 9 0 * * * * * * 2109 0 0 V 10 * * * * * * * * * * * * * * * * 2012 411 * * 10 0 * * * * * * 2109 0 0 N 11 * * * * * * * * * * * 1033 * * 1945 * 1992 * * * 11 0 * * * * * * 2109 0 0 N 12 2012 * * 1945 * * * * * * * 2054 * * * 1992 * * * * 12 0 * * * * * * 2109 0 0 D 13 * * 2054 398 * * * * * * * * * * * * * * * * 13 0 * * * * * * 2109 0 0 N 14 * * * 2012 * * * * * * * 1022 * * * * 1945 * * * 14 0 * * * * * * 2109 0 0 F 15 * * * * 2054 * * 2012 * 968 * * * * * * * * * * 15 0 * * * * * * 2109 0 0 E 16 1945 * 1992 2054 * * * * * * * * 2012 * * * * * * * 16 0 * * * * * * 2109 0 0 N 17 * * * 1945 * * * * * * * 434 * * * * * * * * 17 0 * * * * * * 2109 0 0 Y 18 * * * * 1002 * * * * * * * * * * * * 1945 * 2054 18 0 * * * * * * 2109 0 0 F 19 * * * * 411 * * 2012 * * * * * * * * * * * * 19 0 * * * * * * 2109 0 0 R 20 * * * * * * * * * * * * * * 0 * * * * * 20 0 * * * * * * 2109 0 0 K 21 2012 * * * * * * * 998 * * * * * 1992 * * * * * 21 0 * * * * * * 2109 0 0 I 22 * * * * * * * 2054 * 1945 2012 * * * * * * 1992 * * 22 0 * * * * * * 2109 0 0 F 23 * * * * 1033 * * * * 1992 1945 * * * * * * * * * 23 0 * * * * * * 2109 0 0 L 24 * * * * * * * * 978 2054 * * * * * * 1992 * * * 24 0 * * * * * * 2109 0 0 D 25 * * 0 * * * * * * * * * * * * * * * * * 25 0 * * * * * * 2109 0 0 V 26 1945 2012 * * * * * * * * * * * * * * * 1022 * * 26 0 * * * * * * 2109 0 0 R 27 * * * * * * * * * * * * * * 0 * * * * * 27 0 * * * * * * 2109 0 0 S 28 * * * * * * * * 1992 2012 * * * * * 2054 1945 * * * 28 0 * * * * * * 2109 0 0 S 29 * * * * * * * * * 1992 * 2012 * * * 998 * * * * 29 0 * * * * * * 2109 0 0 G 30 * * * * * 0 * * * * * * * * * * * * * * 30 0 * * * * * * 2109 0 0 S 31 * * * * 1945 * * * * * * * * * * 434 * * * * 31 0 * * * * * * 2109 0 0 K 32 * * * * * * * * 434 * * * * * 1945 * * * * * 32 0 * * * * * * 2109 0 0 K 33 * * * * * * * * 0 * * * * * * * * * * * 33 0 * * * * * * 2109 0 0 T 34 * * * * * * * * * 2012 * * * * * * 2054 968 * * 34 0 * * * * * * 2109 0 0 T 35 * * * * * * * 978 * * * * * * * * 2054 1992 * * 35 0 * * * * * * 2109 0 0 I 36 * * * * * * * 418 * * * * * * * * * 1992 * * 36 0 * * * * * * 2109 0 0 N 37 * * * * * * * * * * * 0 * * * * * * * * 37 0 * * * * * * 2109 0 0 V 38 * * * * 2012 * * 1992 * * * * * * * * * 998 * * 38 0 * * * * * * 2109 0 0 F 39 * * * * 2054 * * 398 * * * * * * * * * * * * 39 0 * * * * * * 2109 0 0 T 40 * * * * * * * * * * * * * * * 978 1022 * * * 40 0 * * * * * * 2109 0 0 E 41 * * 1992 2054 * * * * * * * * 1945 * * 2012 * * * * 41 0 * * * * * * 2109 0 0 I 42 * * * * * * * 1033 * 968 * * * * * * * * * * 42 0 * * * * * * 2109 0 0 Q 43 * * * * * * * * 1992 * * * 1945 2054 * 2012 * * * * 43 0 * * * * * * 2109 0 0 Y 44 * * * * 1992 * 1945 * * * * * * * * * * * * 1033 44 0 * * * * * * 2109 0 0 Q 45 * * * * * * 1992 * * * * * 2012 2054 * * * * 1945 * 45 0 * * * * * * 2109 0 0 E 46 * * * 434 * * * * * * * * * 1945 * * * * * * 46 0 * * * * * * 2109 0 0 L 47 * * * * 2012 * * * * 2054 * * * * * * * 968 * * 47 0 * * * * * * 2109 0 0 V 48 * * * * * * * 2012 * 1945 * * * * * * * 1022 * * 48 0 * * * * * * 2109 0 0 T 49 1945 * * * * 1992 * * * * * * * 2012 * * 2054 * * * 49 0 * * * * * * 2109 0 0 L 50 * * * * * * * * * 2054 * 2012 * * * 1945 * * * 1992 50 0 * * * * * * 2109 0 0 I 51 978 * * * * * * 1022 * * * * * * * * * * * * 51 0 * * * * * * 2109 0 0 R 52 * * * * * * * * * * * * * * 0 * * * * * 52 0 * * * * * * 2109 0 0 E 53 * * * 0 * * * * * * * * * * * * * * * * 53 0 * * * * * * 2109 0 0 A 54 0 * * * * * * * * * * * * * * * * * * * 54 0 * * * * * * 2109 0 0 L 55 * * * * * * * 1945 * 1033 1992 * * * * * * * * * 55 0 * * * * * * 2109 0 0 L 56 * * * * * * * * * 0 * * * * * * * * * * 56 0 * * * * * * 2109 0 0 E 57 * * 398 2054 * * * * * * * * * * * * * * * * 57 0 * * * * * * 2109 0 0 N 58 * * * * * * * * * * * 0 * * * * * * * * 58 0 * * * * * * 2109 0 0 I 59 * * * * * * * 0 * * * * * * * * * * * * 59 0 * * * * * * 2109 0 0 D 60 * * 0 * * * * * * * * * * * * * * * * * 60 0 * * * * * * 2109 0 0 I 61 * * * * * * * 1022 * 978 * * * * * * * * * * 61 0 * * * * * * 2109 0 0 G 62 * * * * * 0 * * * * * * * * * * * * * * 62 0 * * * * * * 2109 0 0 Y 63 2012 * * * * * * * * 1945 * * * * * * * * * 1022 63 0 * * * * * * 2109 0 0 E 64 * * * 411 * * * * * * * * * * * * * * * 2012 64 0 * * * * * * 2109 0 0 L 65 * * * * * * * 2012 * 1022 * * * * * * * 1945 * * 65 0 * * * * * * 2109 0 0 F 66 * * * * 2054 * 1992 * * * * * * * * * * * * 978 66 0 * * * * * * 2109 0 0 L 67 * * * * * * * 2012 * 1022 * * * * * * 1945 * * * 67 0 * * * * * * 2109 0 0 W 68 * * * * * * * * * * * * * * * * * * 0 * 68 0 * * * * * * 2109 0 0 K 69 * * * * * * * * 0 * * * * * * * * * * * 69 0 * * * * * * 2109 0 0 K 70 * * * * * * * * 2054 * * * 978 * 1992 * * * * * 70 0 * * * * * * 2109 0 0 N 71 * * 1992 978 * * * * * * * 2054 * * * * * * * * 71 0 * * * * * * 2109 0 0 E 72 * * 1945 434 * * * * * * * * * * * * * * * * 72 0 * * * * * * 2109 0 0 V 73 * * * * * * * * * * * * * * * * * 0 * * 73 0 * * * * * * 2109 0 0 D 74 * * 1033 * * * * * 1945 * * 1992 * * * * * * * * 74 0 * * * * * * 2109 0 0 I 75 * * * * * * * 2054 968 * * * * 2012 * * * * * * 75 0 * * * * * * 2109 0 0 F 76 * * * * 2054 * * * * * 398 * * * * * * * * * 76 0 * * * * * * 2109 0 0 L 77 * * * * 1945 * * * * 1022 2012 * * * * * * * * * 77 0 * * * * * * 2109 0 0 K 78 * * 1992 1945 * * * * 1033 * * * * * * * * * * * 78 0 * * * * * * 2109 0 0 N 79 * * * * * * * * 398 * * 2054 * * * * * * * * 79 0 * * * * * * 2109 0 0 L 80 1945 * * * * * * 2012 * 1022 * * * * * * * * * * 80 411 2012 * 1000 1000 * * 2109 1000 0 E 81 * * * 2054 * * * * * 1992 * 2012 * * * 1945 * * * * 81 0 * * * * * * 2109 0 0 K 82 * * * 1992 * * * * 2054 * * * * 1945 2012 * * * * * 82 0 * * * * * * 2109 0 0 S 83 * * * * * * * * * 1945 * * * 2012 * 2054 * * * 1992 83 0 * * * * * * 2109 0 0 E 84 * * 2012 2054 * * * * * * * 1992 * * * 1945 * * * * 84 0 * * * * * * 2109 0 0 V 85 * * * * * * * 1992 * * 2012 * * * * * * 998 * * 85 0 * * * * * * 2109 0 0 D 86 * * 411 * * * * * 2012 * * * * * * * * * * * 86 0 * * * * * * 2109 0 0 G 87 * * * * * 0 * * * * * * * * * * * * * * 87 0 * * * * * * 2109 0 0 L 88 * * * * * * * 1002 * 998 * * * * * * * * * * 88 0 * * * * * * 2109 0 0 L 89 * * * * * * * 2012 * 1022 1945 * * * * * * * * * 89 0 * * * * * * 2109 0 0 V 90 * * * * * * * 1002 * * * * * * * * 1945 2054 * * 90 0 * * * * * * 2109 0 0 Y 91 * * * * * * * * * * * * * * * * * * * 0 91 0 * * * * * * 2109 0 0 C 92 * 0 * * * * * * * * * * * * * * * * * * 92 0 * * * * * * 2109 0 0 D 93 * * 0 * * * * * * * * * * * * * * * * * 93 0 * * * * * * 2109 0 0 D 94 * * 1033 968 * * * * * * * * * * * * * * * * 94 0 * * * * * * 2109 0 0 E 95 * * 1945 1022 * * * * * * * 2012 * * * * * * * * 95 0 * * * * * * 2109 0 0 N 96 * * * * * * * * * * * 418 * * * * 1992 * * * 96 0 * * * * * * 2109 0 0 K 97 * * * * * * * * 418 * * * * * 1992 * * * * * 97 0 * * * * * * 2109 0 0 V 98 * * * * * * * * * * * * 1992 * * * * 2054 * 978 98 0 * * * * * * 2109 0 0 F 99 * * * * 2054 * * 1992 * * * * * * * 1945 2012 * * * 99 0 * * * * * * 2109 0 0 X 100 * * * * * * * 1612 * * 571 * * * * * * * * * 100 0 * * * * * * 1892 0 0 S 101 * * * 2012 * * * 1992 * * * * * * * 998 * * * * 101 0 * * * * * * 2109 0 0 K 102 * * * * * * * * 0 * * * * * * * * * * * 102 0 * * * * * * 2109 0 0 I 103 * * * * * * * 434 * 1945 * * * * * * * * * * 103 0 * * * * * * 2109 0 0 V 104 * * * * * * * * * 2012 1945 * * * * * * 2054 * 1992 104 0 * * * * * * 2109 0 0 D 105 * * 1022 * * * 2012 * * * * * * * * 1945 * * * * 105 0 * * * * * * 2109 0 0 N 106 1992 * * * * * * * 2012 * * 2054 * * * 1945 * * * * 106 0 * * * * * * 2109 0 0 L 107 * * * * 1992 * * * * 998 * * * * * * * 2012 * * 107 0 * * * * * * 2109 0 0 P 108 * * * * * * * * * * * * 0 * * * * * * * 108 0 * * * * * * 2109 0 0 T 109 * * 1945 * * * * * * * * 1002 * * * * 2054 * * * 109 0 * * * * * * 2109 0 0 A 110 2054 * * * * * * * 1992 * * * * * * 978 * * * * 110 0 * * * * * * 2109 0 0 I 111 * * * * * * * 434 * 1945 * * * * * * * * * * 111 0 * * * * * * 2109 0 0 K 112 * * * * * * * * 0 * * * * * * * * * * * 112 0 * * * * * * 2109 0 0 R 113 1002 * * * * * * 1945 * * * * * * 2054 * * * * * 113 0 * * * * * * 2109 0 0 N 114 * * * * * * * * * * 1992 1033 * * * 1945 * * * * 114 0 * * * * * * 2109 0 0 L 115 * * * * * * * 1002 * 2054 1945 * * * * * * * * * 115 0 * * * * * * 2109 0 0 I 116 * * * * * * * 418 * * * * * * * * 1992 * * * 116 0 * * * * * * 2109 0 0 K 117 * * * * * * * * 0 * * * * * * * * * * * 117 0 * * * * * * 2109 0 0 D 118 * * 418 * * * * * * * * 1992 * * * * * * * * 118 0 * * * * * * 2109 0 0 F 119 * * * * 2054 * * * * * * 1945 * * * * * * * 1002 119 0 * * * * * * 2109 0 0 C 120 * 0 * * * * * * * * * * * * * * * * * * 120 0 * * * * * * 2109 0 0 R 121 * * * * * * * * 583 * * * * * 1588 * * * * * 121 0 * * * * * * 1854 0 0 K 122 * * * * * * * * 0 * * * * * * * * * * * 122 0 * * * * * * 1000 0 0 L 123 * * * * * * * * * 0 * * * * * * * * * * 123 0 * * * * * * 1000 0 0 S 124 * * * * * * * * * * * * * * * 0 * * * * 124 0 * * 0 * * * 1000 0 0 //