HHsearch 1.5 NAME c2penE_ FAM FILE c2penE_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2penE_.a3m DATE Wed Mar 10 18:45:09 2010 LENG 110 match states, 110 columns in multiple alignment FILT 32 out of 36 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.8 EVD 0.3943 -1.8289 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCTTSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH HHHHHHTTCC >sa_dssp EDDEDCEDDEEDDCEBADDACCCBDDCBDDECEECCDDBDDBDDCDECDEBECBBECADEECCDBAEDADECCEECCEECDDECEDDDEDEECEDDBEEE EEEEDDEEDE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHCC >ss_conf 9369999999999999999999999999630834448999998528947599999999720499999999999999876899999999999999699999 9999997579 >Consensus xxxxxkxaaxxLxxxfTyxAvriVlxQlxxxnpxxxxxLxdFlxxnplxDGdxxLxxLmxexxxlAlRilxvRxxxaexxfdxlxxxxxexixxxNxxxx RxxLerxtxx >c2penE_ FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHR RSLLERLTQV >UniRef50_D1H5B9(51-121:167) Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=8 Tax=Magnoliophyta RepID=D1H5B9_VITVI E=2e-08 s/c=0.85 id=31% cov=65% -----EDVKTQILNYFTYKAVRTVMHQLYEMNPTQYRWLYDFVAANKPGEGKRFIRILVKEKQELAERVMVTRLHL------------------------ ---------- >UniRef50_C1MVZ1(16-115:115) Predicted protein (Fragment) n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MVZ1_9CHLO E=2e-24 s/c=1.13 id=23% cov=90% -----KKASRLLTALFTYVATWIGTREAARVTNVHAFLL-DFLEANPVKDGDAFLEKLTAADPSIARRVMDVRTAYAGGDFEWdiCRGLVMQNMEKSNAE IQRGFL------ >UniRef50_A9SKM1(15-120:121) Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SKM1_PHYPA E=4e-13 s/c=0.72 id=28% cov=91% -----------LHNFFTYVAVKIVASQLEDYNKEAYVDLMEFLEKMPLNDGDKFIAALMREsfrhkNLDVVVLRLQVRSAYANQDFEWdnLQSLSFKQLE EGNKTLMRKYLTETSNM >UniRef50_C1E300(25-139:186) Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E300_9CHLO E=5e-16 s/c=0.74 id=21% cov=87% --------AQMLRMLMTHVAIRVVQGHLEGLGNDGGFapqasnfdgscgspDLADLLwamENVPLGDGDSWISAFMKKNPVVALRVLEARKAYCEEfDYQ QMRSATRELIDSGNMSLMREH------- >UniRef50_A4RX50(13-120:150) Predicted protein n=2 Tax=Ostreococcus RepID=A4RX50_OSTLU E=5e-10 s/c=0.61 id=25% cov=62% ------DVDSLLMNYFTFRALKETLAQMQETDlspgKGEYKWLYNFAASEYKNRGDEFIKKLFAEgRSDHAQRILAQR---------------------- --------------- >UniRef50_A4RTZ0(17-126:130) Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RTZ0_OSTLU E=6e-08 s/c=0.53 id=27% cov=64% --------------------------------------LKAYVDAHPIgRDGNDWLRGLMARDdagsRAAGLRVLEARETYANEVFSFeeVREMVEKAVT EENDKLMADYVKRM--- >UniRef50_A4S6B8(15-138:144) Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S6B8_OSTLU E=2e-20 s/c=0.81 id=23% cov=92% -----RRASELMNAMLTYVSAWIVISQLENVAPRRSVagedagedgegearrvttsheFLLDYLEANPVRDGEQWLIALTRVNPTLAERIMAVRRAYAEE DFEWhnVAKLTSESIAAGNERAMREWLK----- >UniRef50_A4S2Z1(9-116:116) Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S2Z1_OSTLU E=2e-15 s/c=0.77 id=26% cov=69% --------SEALKTLFTVAAVRTTLDQELSYDNEGGSTalssaLAGFLETHPLRNGDEWLEALMRDEPQLrlaALRLMETRAAYARENFDW--------- ------------------ >UniRef50_C1E4V2(69-222:250) Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4V2_9CHLO E=2e-13 s/c=0.50 id=21% cov=93% -----RKAATALGNLFTMAATRVILDQFTGTrhRSPVYYKMvravrgpdvapppptpraplapdleprknpvlpaapltffslatqVDFLSENPLRNGNE WLAKLMREPdndlRITAMRIIETRRVFAESEFNWevMNRVAKEEIDDDTLEMNKQMLMR---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * F 1 * * * * 1951 * * 1828 * 1121 * * * * * * * * * * 1 0 * * * * * * 1523 0 0 K 2 * * * * * * * * 0 * * * * * * * * * * * 2 0 * * * * * * 1844 0 0 K 3 * * * * * * 2678 * 2286 * * * * 1554 1746 * * * * * 3 0 * * * * * * 2077 0 0 V 4 * * * * * * * 689 * * * * * * * * * 1397 * * 4 0 * * * * * * 2077 0 0 A 5 264 * * * * * * * * * * * * * * 2580 * * * * 5 0 * * * * * * 2077 0 0 K 6 * * * 3079 * * * * 1270 * * * * 4066 1437 * 4722 * * * 6 0 * * * * * * 3582 0 0 E 7 4227 * 1424 3317 * * * * 1437 * * * * * 3264 * * * * * 7 0 * * * * * * 3786 0 0 T 8 1078 * * * * * * * * * * * * * * * 1663 2246 * * 8 0 * * * * * * 3786 0 0 A 9 848 * 3948 4649 * * * * 3759 * * * * * * 2154 * 4601 * * 9 0 * * * * * * 4014 0 0 I 10 * * * 2957 * * * 4750 1883 * 4327 * * 3313 2774 3336 3050 4430 * * 10 0 * * * * * * 4014 0 0 T 11 2214 * * * * 4585 3648 * * 2650 2300 4321 * 3759 * * 3750 3288 * * 11 0 * * * * * * 4014 0 0 L 12 * * * * * 4724 * 4962 * 239 3595 * * * * * * * * * 12 0 * * * * * * 3981 0 0 Q 13 3695 * * 4438 * 3931 3628 3449 3830 3432 4124 3653 * 2802 3239 * 4314 4668 * * 13 0 * * * * * * 3981 0 0 S 14 2946 * 3228 * * * 4527 * * * 3965 1729 * * * 1670 4637 * * * 14 0 * * * * * * 3981 0 0 Y 15 * * * * 3008 * * * * 1593 2993 * * * * * * 4911 * 1375 15 0 * * * * * * 3981 0 0 L 16 * * * * 820 * * 4575 * 1605 3992 * * * * * * * * * 16 0 * * * * * * 4002 0 0 T 17 * * * * * * * * * * * 4541 * * * * 63 * * * 17 0 * * * * * * 4002 0 0 Y 18 * * * * 3377 * 3992 * * * 2722 * * * * * * 4671 * 621 18 0 * * * * * * 4002 0 0 Q 19 3311 * * * * * * 3501 3016 * * * * 2116 4164 4009 * 1562 * * 19 0 * * * * * * 4002 0 0 A 20 117 * * * * * * * * * * * * * * 3683 * * * * 20 0 * * * * * * 4002 0 0 V 21 2752 4463 * * * * * 3992 * 4018 5199 * * * * * 3168 881 * * 21 0 * * * * * * 4002 0 0 R 22 * 4695 * * * * * * 2353 4828 * * * * 843 * * * 2531 * 22 0 * * * * * * 4002 0 0 L 23 * * * 4164 * * * 1653 * 3996 * * * * 4828 * 2186 1696 * * 23 0 * * * * * * 4002 0 0 I 24 * * * * * 4329 * 2126 * * * * * * * * 3395 675 * * 24 0 * * * * * * 4002 0 0 S 25 4467 * * * * * * 2485 * 1337 4077 * * 3350 4695 3896 3521 5056 * * 25 0 * * * * * * 4002 0 0 Q 26 2447 * 1699 4626 * 3254 4997 * * * * 5177 * 4939 4329 3104 3242 * * * 26 0 * * * * * * 4002 0 0 Q 27 * * * 3557 * * 3992 * * * * * * 231 * * * * * * 27 0 * * * * * * 4002 0 0 L 28 4329 * * 3895 4022 * * * * 603 3085 * * * * * 4463 * * * 28 0 * * * * * * 4002 0 0 S 29 3104 * * 1695 * 4604 * * * 4671 * * * 3377 * 2779 4022 * 4742 2702 29 0 * * * * * * 4002 0 0 E 30 * * 4465 1291 * 1968 * * * * * 3018 * * 4328 3094 * * * * 30 60 4622 * 2807 222 * * 4004 1000 0 T 31 4460 * * * * * * * * 3990 3008 * * * * 4972 1409 2968 * 2113 31 191 3012 * 1000 1000 * * 4004 1674 0 N 32 3018 * 2717 * * 3990 * * * * * 1036 * * 3012 * 4328 * * * 32 85 4131 * 2000 415 * * 4004 1000 0 P 33 * * * * * * * * 3288 * * 2473 972 4622 4536 3012 * * * * 33 110 3766 * 4451 68 * * 4004 1535 0 G 34 4689 * 3990 2622 * 2664 * * * * * 3848 1831 4622 3680 * 4077 4328 * * 34 0 * * * * * * 4004 0 0 Q 35 2611 * * 3486 * 2826 4328 * * 5046 4004 * * 2396 3244 4929 5154 3223 * * 35 0 * * * * * * 4004 0 0 A 36 1693 * * * * 2915 4460 * * * * * * * * 3680 * * * 1202 36 0 * * * * * * 4004 0 0 I 37 4956 * * 4460 3149 4536 * 2635 3554 3182 4850 * 4004 * 3959 4667 5168 3621 * 3316 37 219 2827 * 4222 79 * * 4004 1699 0 W 38 * * 2748 3684 3018 5154 * * 3012 4328 * * * * 4689 * 4667 * 1435 * 38 58 4667 * 2322 322 * * 4004 1000 0 L 39 * * * * 4092 * * * * 183 4052 * * * * * * * * * 39 119 5006 4376 5492 32 * * 4003 1000 0 G 40 3308 * * * * 4883 5575 3963 5379 3002 2931 4651 * 3387 4992 3478 * 3969 * 2477 40 0 * * * * 0 * 3923 0 1000 E 41 5411 * 1191 2540 * 4777 5683 * * * * 2409 * 3539 * * * 4778 * * 41 0 * * * * * * 4003 0 0 F 42 * * * * 503 * * * * 4089 * * * * * * * * * 2084 42 0 * * * * * * 4036 0 0 S 43 4149 * * * * * * * * 770 * * * * * 2478 * 2493 * * 43 87 4089 * 1585 585 * * 4036 1000 0 K 44 2068 * 4278 1720 * 4648 5153 * 4946 * * 3855 * 3713 * 2953 * 4980 * * 44 0 * * * * * * 4036 0 0 R 45 2652 * * 2622 * * 4439 * 4471 * * 3467 * 4433 3326 2937 2393 5068 * * 45 0 * * * * * * 4036 0 0 H 46 * * 5094 4149 4806 4922 2981 * 4082 * 4471 1090 4648 5209 * * * 3678 * * 46 0 * * * * * * 4036 0 0 P 47 * * * * * * * * 2393 * 4641 5127 909 * 5193 2985 * * * 4195 47 0 * * * * * * 4002 0 0 I 48 * * * * 4916 * * 2397 3401 1308 * * 2969 * * * * 2729 * * 48 51 4850 * 0 * * * 4002 1000 0 Q 49 * * * * * 2347 * * 3383 * * 2858 * 1974 2009 4941 4880 * * * 49 78 4255 * 890 1119 * * 4002 1364 0 E 50 5119 * 434 3956 * * * * * * * 3156 * * 4195 * * * * * 50 59 4641 * 0 * * * 4002 1000 0 S 51 3414 * * * * 265 * * * * * * * * * 3758 * * * * 51 42 5119 * 0 * * * 4002 1000 0 D 52 * * 1079 2119 * * * * 2969 * * 3158 * * * 4135 * * * * 52 35 * 5366 * * * * 4002 0 0 L 53 1797 * 5471 2241 5099 * * * 3309 3977 * * * 4964 4221 3426 3716 5076 * * 53 0 * * * * 0 * 4045 0 1000 Y 54 * * * * 1351 * * * * * * * * * * * * * 1252 2411 54 0 * * * * * * 4002 0 0 L 55 * 3960 * * * * * 2233 * 624 3755 * * * * * * * * * 55 0 * * * * * * 4002 0 0 E 56 1882 * 4805 2401 * * * 5308 3535 * * * * 4688 2152 4628 3509 * * * 56 0 * * * * * * 4002 0 0 A 57 1228 * * 2712 * 4092 * 5145 2333 4878 * * * 5016 * * 4941 4729 * * 57 0 * * * * * * 4002 0 0 M 58 * * * * 3714 * * * * 350 3337 * * * * * * 4641 * * 58 0 * * * * * * 4002 0 0 M 59 * * * * 3468 4880 * 4159 * 2950 1064 * * * * 4878 3569 3415 * * 59 0 * * * * * * 4002 0 0 L 60 2122 * 5113 * * 4805 * * 2119 4788 * 4916 * 3919 1556 * * * * * 60 0 * * * * * * 4002 0 0 E 61 3944 * 5247 982 * * 2893 * 3634 * * * * * 3349 * 4805 4231 * * 61 208 2897 * 1334 729 * * 4002 2028 0 N 62 * * 2980 3272 * * * * 2969 * * 1296 4231 * 3587 3347 * * * * 62 316 2345 * 1936 437 * * 4002 2268 0 K 63 * * * * * * 4641 * 3050 4275 * 5158 2003 2586 2148 3083 * * * * 63 0 * * * * * * 4002 0 0 E 64 3272 * 2626 1371 * * * 5109 * 3782 * * * 4107 4941 4015 4231 4628 * * 64 48 4941 * 1585 585 * * 4002 1000 0 L 65 4085 * * * * * 4195 3944 * 866 4688 * * * * * 4342 2436 * * 65 81 4202 * 1585 585 * * 4002 1466 0 V 66 449 * * * * 2980 * * * * * * * * * * * 2830 * * 66 0 * * * * * * 4002 0 0 L 67 * * * 2466 4688 * * * * 1187 3027 * * 4195 5013 * * 3265 * 5127 67 0 * * * * * * 4002 0 0 R 68 * * * * * * * * * 4275 * * * * 76 * * * * * 68 0 * * * * * * 4002 0 0 I 69 * * * * * * * 1109 * 3004 4688 * * * 4275 * * 1638 * * 69 0 * * * * * * 4002 0 0 L 70 * 4805 * * * 5157 * 2855 * 1361 1291 * * * * * * * * * 70 0 * * * * * * 4002 0 0 T 71 2791 * 5013 1220 * * * 4880 * * * * * 4275 * * 2211 3415 * * 71 0 * * * * * * 4002 0 0 V 72 3734 4805 * * * * * * * * * * * 4195 * * 1900 820 * * 72 0 * * * * * * 4002 0 0 R 73 * * * * * * * * * * * * * * 0 * * * * * 73 0 * * * * * * 4002 0 0 E 74 3925 * 5317 1408 * * * * 2585 2870 * * * * 3320 3405 4864 * * * 74 0 * * * * * * 3849 0 0 N 75 1490 * 4575 * * * 1632 * * * * 4505 * * * * 3471 2785 * * 75 0 * * * * * * 3808 0 0 L 76 * * * * 3741 * * 3645 * 1325 * * * * * * * * * 1164 76 0 * * * * * * 3808 0 0 A 77 450 3206 * * * * * * * * 4323 * * * * * * 3187 * * 77 116 3693 * 2000 415 * * 3624 1180 0 E 78 4491 * 4477 910 * 3085 * * 4234 * * 3136 * 4141 4765 * * * * * 78 0 * * * * * * 3624 0 0 G 79 * * 4321 1242 3693 3023 3346 * * * * * * 4038 * 3490 3673 * * * 79 173 3987 4323 0 * * * 3624 1000 0 V 80 4989 * 1159 3536 * * * 4427 * * * 4337 * 4725 * * * 1734 * * 80 0 * * * * 0 * 3674 0 1000 L 81 4141 * * * 871 * * * * 2509 * * * * * * * 3631 * 2833 81 0 * * * * * * 3624 0 0 E 82 * * 1256 1411 * * * * * * * 3484 * 3987 * 4241 * * * * 82 0 * * * * * * 3624 0 0 F 83 * * * * 2002 * * * * * * * * 3987 * * * * 1026 2348 83 886 1124 * 1000 1000 * * 3624 2995 0 L 84 * 3841 * * * * * * * 1132 2054 * * * * 3945 * 2573 * * 84 0 * * * * * * 3859 0 0 P 85 4028 * * 4132 * * * * 3115 * * 4126 1613 3964 1653 * * * * * 85 0 * * * * * * 3859 0 0 E 86 4318 * * 1421 * 3038 * * 4028 * * * * * 2415 2281 * * * * 86 0 * * * * * * 3859 0 0 M 87 3561 * * 3338 * * * * * 1620 1409 * * * * * * 3129 * * 87 0 * * * * * * 3859 0 0 V 88 2185 * * * * * * * * * * * * * * 2951 1504 1746 * * 88 0 * * * * * * 3859 0 0 L 89 * * * 4330 2951 * * 3337 2050 2613 3841 * * * 2427 4028 * * * * 89 0 * * * * * * 3859 0 0 S 90 3375 * 4318 1240 * * * * 2481 * * 4266 * 3841 * 4328 3652 * * * 90 0 * * * * * * 3859 0 0 Q 91 4330 * * 3129 * 2507 * * * 3561 3937 2443 * 2620 4318 3142 * * * * 91 0 * * * * * * 3859 0 0 I 92 * * * * * * * 902 * 2601 2892 * * * * * 4318 3120 * * 92 0 * * * * * * 3859 0 0 K 93 2190 * 2270 2901 * * * * 4328 * * * * 2391 3119 * 3569 * * * 93 0 * * * * * * 3859 0 0 Q 94 4028 * 4126 1415 * 4132 * * 2443 * * * * 2923 4357 3561 * * * * 94 0 * * * * * * 3859 0 0 S 95 2027 * 2604 3343 * 2251 * * * * * * * * * 2207 * 3945 * * 95 0 * * * * * * 3859 0 0 N 96 * * * * * * * * * * * 175 * * * * 3129 * * * 96 0 * * * * * * 3859 0 0 G 97 3841 * 4330 4028 * 3124 * 2438 3964 2230 2918 * * * * * 3937 4473 * * 97 0 * * * * * * 3859 0 0 N 98 4266 * 3131 1667 * 4473 * * 3120 * * 3342 * * 4028 3561 3131 * * * 98 0 * * * * * * 3859 0 0 H 99 4028 * * * * * 1848 3841 * 1463 3129 * * * * * * 3945 * 4344 99 0 * * * * * * 3859 0 0 R 100 * * * * * * * * * * 1358 4126 * 3841 1407 4357 4132 * * * 100 0 * * * * * * 3859 0 0 R 101 4330 * * * * * * * 3129 * * * * * 258 * * * * * 101 0 * * * * * * 3859 0 0 S 102 2759 * 3120 2245 * 3841 4266 * 3964 * * 4394 * 2426 * 3227 * * * * 102 0 * * * * * * 3859 0 0 L 103 * * * * 2979 * 2342 * * 1842 3219 * * * * * * * 4028 2131 103 0 * * * * * * 3859 0 0 L 104 * * * * * * * * * 224 * * * * * * * 2800 * * 104 138 3457 * 0 * * * 3568 1000 0 E 105 * * * 784 * * * * 2355 * 3318 * * * * * 3016 * * * 105 0 * * * * * * 3162 0 0 R 106 * * * 2752 * * * * * * * * * * 425 3230 * * * * 106 0 * * * * * * 2982 0 0 L 107 * * * * * * * 2491 * 1039 2519 * * * * * 2635 * * * 107 0 * * * * * * 2895 0 0 T 108 * * * * * * * * * * * * * * * 2475 286 * * * 108 0 * * * * * * 2750 0 0 Q 109 * * * * * 2833 * * * * * 2017 * 1075 2858 * * * * * 109 0 * * * * * * 2317 0 0 V 110 * * * * * * * * * 1424 1145 * * * * * * 2512 * * 110 0 * * 0 * * * 2195 0 0 //