HHsearch 1.5 NAME c2ogfD_ FAM FILE c2ogfD_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2ogfD_.a3m DATE Wed Mar 10 06:07:51 2010 LENG 122 match states, 122 columns in multiple alignment FILT 20 out of 24 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.3872 -1.0104 SEQ >ss_dssp CCCGGGSHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHHTSTTEEEEEEEECSCCSSCEECCGGGEEEEEEEEETTEEE EEEEEEEGGGTEEEEEEEEEEC >sa_dssp EECDBDDEECDEECEEDDCDDBADDBADDAACCACEECDDCEABEECCEEBBEDACDDBDECCBBEDBEADADECDEEEDEADBDBACADACADAEEBBA CBBACDCEEEDEBDDCDEECDE >ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEECCEEEEEEEEEECCEEE EEEEEECCCCCCCHHHHHHCCC >ss_conf 9411057889998425897888898743435434354416766831079999999975013952566799996066643674323368999999788599 9999971446897013311049 >Consensus xxxxxxxxxxxkYFknxTdrerAxFEaGIklGaLyHQFvGtPVsxxtaxslExAIexsixxQPxvxdvxVxIxxxxxxYteLxGxmldvxixixyxxxxv xxxleyxxelxYPLMxixeixe >c2ogfD_ SLRVEETEVFKKYFKNLTDRERAVFEGGITLGALFHQFVGTPVSKYNKESLERAIEEAXKNQPCVYDIKVKIRNVGEKYVSLDGKXLDVDLKIKINKTVA HLKLEYIPEIDYPLXYVKKFEE >UniRef50_Q8TX89(2-116:121) Uncharacterized protein conserved in archaea n=1 Tax=Methanopyrus kandleri RepID=Q8TX89_METKA E=4e-21 s/c=0.89 id=46% cov=90% -----------KYFKRLSDRERAIFEAGITLGAIYHQFCGTPVSPGTAEEVAKCIERAALLQPCVIDARVEVDVSSEDtdnyggYTEVSGRNLRVTIVTR CGEWEAVGKLEFIEELNYPLMWVEEI-- >UniRef50_C1V6L6(3-114:114) Uncharacterized conserved protein n=5 Tax=Halobacteriaceae RepID=C1V6L6_9EURY E=3e-15 s/c=0.74 id=44% cov=85% -----------------TDAQNACFEAGIKFGSLYHQFAGTPVSPESADSLARAIEESIANQPYCEAVRVTIRrdeleaaleDATADYTELTGRFLDVEM DIEYEGTAVQTKMEM--EDGYPLMKLVSVEE >UniRef50_O27110(16-131:131) Conserved protein n=9 Tax=Euryarchaeota RepID=O27110_METTH E=2e-32 s/c=1.20 id=50% cov=90% ----------EKYFSNLSDRERAIFEGGISMGALFHQFTGTPVSLETADGLESAISESIKLQPAIMDVEVHIdremirKTAGEfGYVSLTGDMLSVRLTV EHGSERVTVRMEYLEELRYPLMYIED--- >UniRef50_Q648S1(5-117:142) Uncharacterized protein conserved in archaea n=3 Tax=Archaea RepID=Q648S1_9ARCH E=7e-31 s/c=1.19 id=44% cov=88% ----------------ITDRDTALFESGIKLGALYHQFVGSPVNLSTAGSLEAAIRDSISLQPCVQSITVAIdremvrgRINDFGYCELEGRMLGVEAVI RYGTAVVHVGMRYDAEMDYPMMSVQQIEQ >UniRef50_A7I8X8(11-118:125) Putative uncharacterized protein n=4 Tax=Methanomicrobiales RepID=A7I8X8_METB6 E=2e-28 s/c=1.17 id=40% cov=85% -----------------TDREQAIFEAGIKLGALYHQWVGTPIAQESAASVESAIEKAVVLQPFVEEITVRLDRFRMqknvfGYSELSGLMFDVEIVTRV G--FWYCRATLAPENGYPLMKVLECHE >UniRef50_B8D3S0(8-128:129) Putative uncharacterized protein n=1 Tax=Desulfurococcus kamchatkensis 1221n RepID=B8D3S0_DESK1 E=3e-24 s/c=0.93 id=39% cov=92% -----------KYFSGkTTSRDRAVFEAGIAIGMIIHQFTGIPVKrLEDIELIGKVIENAVKAQPFKEDAKIEIRIGDlssspgnpYSYTTLKTRHIDAR IVVRYNNVRVVARLRYIPELDFNLAYIEDIEE >UniRef50_C8S7G5(2-106:108) Putative uncharacterized protein n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S7G5_FERPL E=3e-20 s/c=0.95 id=45% cov=79% -------------------RELAAFEAGIKLGALFHQFVGIPVSFENVELVEKTMESCMKLQPYVVDAEVKIDKrklkerlSSFNYTSLEGDMIFARVKV RVENDEVEAVLEYDKKLKYPL-------- >UniRef50_B5IE19(1-122:129) Conserved domain protein n=3 Tax=Euryarchaeota RepID=B5IE19_9EURY E=4e-34 s/c=1.19 id=48% cov=95% -MKVDKA---KKYF-NCSSSERAAFEAGIKLGTVYHQFVGTPLSLENVDALEKAMEASLKVQPFVVDAKVRIDrsrikkkSGFYKYLTLSGDMLDVELTV QYEDKTALCKLEYVEEMDYPLMYIKEI-- >UniRef50_Q6L2J9(6-119:120) Putative uncharacterized protein n=1 Tax=Picrophilus torridus RepID=Q6L2J9_PICTO E=1e-29 s/c=1.14 id=41% cov=90% ----------EKYF-NCTDIQRAFFEAGIKLGAIFHQYTGIPVNSENASMAEEFIERSTMIQPFVENVRISINNVkrssgTYSYSSLNEKMLHAEVLINY NGKKVLGVLNYDEGLDYPVMYAKEV-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 L 2 * * * * * * * * * 1653 552 * * * * * * * * * 2 0 * * * * * * 1540 0 0 R 3 * * * * * * * * 1500 * * * * * 630 * * * * * 3 0 * * * * * * 1540 0 0 V 4 * * * * * * * * * 1967 * * * * * * * 426 * * 4 0 * * * * * * 1678 0 0 E 5 * * 1882 457 * * * * * * * * * * * * * * * * 5 0 * * * * * * 1678 0 0 E 6 * * * 1080 * * * * 924 * * * * * * * * * * * 6 0 * * * * * * 1678 0 0 T 7 1882 * * * * * * * 2029 * * * * * * 1967 2133 * * * 7 457 * 1882 * * * * 1678 0 0 E 8 * * * 0 * * * * * * * * * * * * * * * * 8 0 * * * * * 0 1456 0 1000 V 9 * * * * * * * 1510 * 1573 * * * * * * * 1677 * * 9 0 * * * * * 0 1456 0 1000 F 10 * * * * 0 * * * * * * * * * * * * * * * 10 0 * * * * 0 * 1456 0 1000 K 11 * * 2698 1384 * * * * 1112 * * * * * * * * * * * 11 0 * * * * * * 2058 0 0 K 12 * * * 3227 * * * * 356 * * * * * * 3158 * * * * 12 0 * * * * * * 2401 0 0 Y 13 * * * * * * * * * * * * * * * * * * * 0 13 0 * * * * * * 2449 0 0 F 14 * * * * 0 * * * * * * * * * * * * * * * 14 372 * 2137 * * * * 2449 0 0 K 15 * * * * * * * * 556 * * * * * * 1645 * * * * 15 245 * 2676 * * 0 * 2278 0 1474 N 16 * * * * * 2665 * * * * * 507 * * 2848 * * * * * 16 248 2665 * 0 * 0 * 2401 1000 1000 L 17 * 1992 * * * * * 2615 * 1378 * * * * * * 3090 3590 * * 17 0 * * * * * * 2740 0 0 T 18 * * * * * * * * * * * 4137 * * * 2124 486 * * * 18 0 * * * * * * 3008 0 0 D 19 * * 419 * * * * * * * * * 4164 * * 2349 * * * * 19 0 * * * * * * 3008 0 0 R 20 2737 * * * * * * 3777 * * * * * * 458 4353 * * * * 20 0 * * * * * * 3037 0 0 E 21 * * 2016 916 * * * * * * * * * 2165 * * * * * * 21 0 * * * * * * 3037 0 0 R 22 * * * * * * * * * 4316 * 2319 * 2734 871 * 4258 * * * 22 0 * * * * * * 3066 0 0 A 23 151 * * * * * * * * * * * * * * * * 3329 * * 23 0 * * * * * * 3066 0 0 V 24 2883 2149 * * 3870 * * 2007 * 3311 * * * * * * * 2178 * * 24 0 * * * * * * 3125 0 0 F 25 * * * * 0 * * * * * * * * * * * * * * * 25 0 * * * * * * 3125 0 0 E 26 * * * 0 * * * * * * * * * * * * * * * * 26 0 * * * * * * 3125 0 0 G 27 473 * * * * 2469 * * * 4436 * * * * * 4243 * * * * 27 0 * * * * * * 3125 0 0 G 28 4240 * * * * 78 * * * * * * * * * * * * * * 28 0 * * * * * * 3125 0 0 I 29 * * * * * * * 0 * * * * * * * * * * * * 29 0 * * * * * * 3125 0 0 T 30 3618 * * * * * * * 553 * * * * * * 2819 3390 * * * 30 0 * * * * * * 3125 0 0 L 31 * * * * 2480 * * 3618 * 533 4377 * * * * * * * * * 31 0 * * * * * * 3125 0 0 G 32 * * * * * 0 * * * * * * * * * * * * * * 32 0 * * * * * * 3125 0 0 A 33 529 * * * * * * * * * 3618 * * * * 4532 2457 * * * 33 0 * * * * * * 3125 0 0 L 34 * * * * * * * 1987 * 599 * * * * * * * 3516 * * 34 0 * * * * * * 3125 0 0 F 35 * * * * 1550 * * 3618 * * * * * * * * * * * 793 35 0 * * * * * * 3125 0 0 H 36 * * * * * * 0 * * * * * * * * * * * * * 36 0 * * * * * * 3125 0 0 Q 37 * * * * * * * * * * * * * 0 * * * * * * 37 0 * * * * * * 3125 0 0 F 38 * * * * 263 * * * * * * * * * * * * * 4187 3161 38 0 * * * * * * 3125 0 0 V 39 2480 4146 * * * * * 4436 * * * * * * * * 2024 1083 * * 39 0 * * * * * * 3125 0 0 G 40 * * * * * 0 * * * * * * * * * * * * * * 40 0 * * * * * * 3125 0 0 T 41 * * * * * * * 1807 * * * * * * * 2776 815 * * * 41 0 * * * * * * 3125 0 0 P 42 * * * * * * * * * * * * 0 * * * * * * * 42 0 * * * * * * 3125 0 0 V 43 * * * * * * * 3213 * 3516 * * * * * * * 313 * * 43 0 * * * * * * 3125 0 0 S 44 4187 * * * * 4436 * * 3618 * * 2234 * * * 725 * * * * 44 123 3618 * 0 * * * 3125 1000 0 K 45 * * * 4390 3433 * * * 3560 1646 * * 2085 3346 4240 3870 * * * * 45 0 * * * * * * 3125 0 0 Y 46 2878 * * 1209 * 4146 * * 3428 * * 4445 * * 4382 2745 * * * 4684 46 0 * * * * * * 3125 0 0 N 47 * * 3618 * * * * * * * * 1800 * * * 1836 1510 * * * 47 0 * * * * * * 3125 0 0 K 48 841 * * * * * * 3002 2916 * * * * * * * * 2438 * * 48 0 * * * * * * 3125 0 0 E 49 4187 * 2141 1857 * 3311 * * 4390 * * * 3518 * * 2639 * * * 4445 49 0 * * * * * * 3125 0 0 S 50 4506 * * 4146 * 4377 * 3335 * 2968 3870 * * * * 979 4358 * * * 50 0 * * * * * * 3125 0 0 L 51 3870 * * * * * * 3618 * 753 * * * * * * * 1961 * * 51 0 * * * * * * 3125 0 0 E 52 3326 * * 288 * 3618 * * * * * * * * * * * * * * 52 0 * * * * * * 3125 0 0 R 53 3242 * 4358 3870 * * * 4390 1658 * * * * * 2521 3278 2886 * * * 53 0 * * * * * * 3125 0 0 A 54 420 4146 * * 3870 * * * * * * * * * * * 4431 3618 * * 54 0 * * * * * * 3125 0 0 I 55 * * * * * * * 214 * * 2856 * * * * * * * * * 55 0 * * * * * * 3125 0 0 E 56 2817 * * 586 * * * * * * * * * * 3378 3383 * * * * 56 0 * * * * * * 3125 0 0 E 57 4506 * 2786 1489 * * * * 4187 * * 3618 * 4382 3002 2781 * * * * 57 0 * * * * * * 3125 0 0 A 58 1398 3433 * * * * * * * * * * * * * 921 * * * * 58 0 * * * * * * 3125 0 0 X 59 4040 * * * * * * 1068 * 3355 4292 * * * * * 3874 2027 * * 59 0 * * * * * * 3119 0 0 K 60 4532 * * 4358 * * * * 1327 4146 3161 * * * 3518 2330 * 4187 * * 60 0 * * * * * * 3125 0 0 N 61 3618 * * * * * * 3870 * 1483 * 1681 * * * * * 2469 * * 61 0 * * * * * * 3125 0 0 Q 62 * * * * * * * * * * * * * 0 * * * * * * 62 0 * * * * * * 3125 0 0 P 63 * * * * * * * * * * * * 0 * * * * * * * 63 69 4425 * 0 * * * 3125 1000 0 C 64 4377 1793 * * 1083 * 4358 * * * * * * * * * * * * 2811 64 69 4425 * 1585 585 * * 3125 1000 0 V 65 4425 2913 * * * * * 3383 3618 * * * * * * * * 636 * * 65 0 * * * * * * 3125 0 0 Y 66 * * * 1207 * * * 3283 4467 * 4377 * * 4243 * * 4240 2472 * 3560 66 0 * * * * * * 3125 0 0 D 67 3443 * 995 3346 * 4617 * * 4240 * * 3104 * * * 3351 * * * * 67 0 * * * * * * 3125 0 0 I 68 1653 * * * * * * 1560 * * * * * * * * * 1544 * * 68 0 * * * * * * 3125 0 0 K 69 4617 * * 2858 * * * * 1723 * * * * * 2573 2819 2261 * * * 69 0 * * * * * * 3125 0 0 V 70 * * * * * * * 2739 * * * * * * * * 4425 315 * * 70 0 * * * * * * 3125 0 0 K 71 4243 * 4617 2116 * * 4377 * 2518 * * * * * 2719 2257 3443 * * * 71 0 * * * * * * 3125 0 0 I 72 * * * * * * * 434 * 3213 * * * * 4425 * * 3248 * * 72 313 2358 * 2354 314 * * 3125 1941 0 R 73 * * 1542 * * * * * 3492 4425 * 3129 * * 1477 * * 4390 * * 73 271 2545 * 2431 296 * * 3125 1814 0 N 74 * * 2486 * * 4390 * 2897 3333 * * 2345 * * 3320 4506 3367 4146 * 4445 74 139 3449 * 2807 222 * * 3125 1451 0 V 75 3452 * 3401 4390 4187 2995 * 3409 * * * 4243 * * * 2315 * 2071 * * 75 355 2198 * 2343 317 * * 3125 2153 0 G 76 * * 2897 3518 4506 2467 * 4390 * * * 4526 4240 * 4187 2041 3164 * * * 76 123 3618 * 3000 193 * * 3125 1000 0 E 77 3443 * * 2076 2342 * 3518 * 4436 * 4187 4526 * * * 4382 * * * 2367 77 397 2057 * 1550 603 * * 3125 2197 0 K 78 * * 3326 3401 * 1368 * * 2172 * * 4431 * * * 2739 * * * * 78 159 3259 * 2585 263 * * 3125 1516 0 Y 79 * * * * * * * * * * * * * * * * * * * 0 79 0 * * * * * * 3125 0 0 V 80 * 3311 * * * * * 4445 * 3516 * * * * * 2505 1136 2892 * * 80 0 * * * * * * 3125 0 0 S 81 * * * 901 * * * * * * * * * * * 2003 2217 * * * 81 0 * * * * * * 3125 0 0 L 82 * * * * * * * * * 84 * * * * * * * 4146 * * 82 0 * * * * * * 3125 0 0 D 83 * * 4684 2765 * * * * 2981 * * 3870 * * 4445 2029 1608 * * * 83 0 * * * * * * 3125 0 0 G 84 * * * 3870 * 315 * * * * * * 4436 * * * 3618 * * * 84 0 * * * * * * 3125 0 0 K 85 4240 * 2439 2154 * * * * 2680 4187 * * 4467 * 1827 * * * * * 85 0 * * * * * * 3125 0 0 X 86 * * * * 3456 * 3619 * * * 558 4040 * * * * * * * 3517 86 0 * * * * * * 3119 0 0 L 87 * * * * 3270 * * 2968 * 670 3518 * * * * * * * * 4240 87 0 * * * * * * 3125 0 0 D 88 * * 765 * 4431 4243 3870 * 3451 * * 4382 * * 4146 4377 * * * * 88 0 * * * * * * 3125 0 0 V 89 1760 * * * * * * * * * * * * * * * * 505 * * 89 0 * * * * * * 3125 0 0 D 90 * * 3572 1175 * * * * * * 4526 * * 4382 2507 4390 3248 4240 * * 90 0 * * * * * * 3125 0 0 L 91 3351 * * * * * * 1767 * 1681 3443 * * * * * * 2291 * * 91 0 * * * * * * 3125 0 0 K 92 * * 3455 4240 * * * * 2958 3870 4445 * * 4358 3518 * 2838 1569 * * 92 0 * * * * * * 3125 0 0 I 93 4382 * * * * * * 1216 * * * * * * * * 2605 1485 * * 93 0 * * * * * * 3125 0 0 K 94 * * 2936 2424 * * * * 2116 * * 3870 * 4506 1556 * * * * * 94 0 * * * * * * 3125 0 0 I 95 * 4146 * * * * 4377 4684 * * * * * * * * 4390 2370 * 700 95 0 * * * * * * 3125 0 0 N 96 * * * 1480 * 1914 4467 * 4390 * * 1819 * * * * * * * * 96 81 * 4187 * * * * 3125 0 0 K 97 * * 3212 2663 * 1722 * * 4595 * * 2084 * * * 3300 4254 * * * 97 0 * * * * * 0 3069 0 1000 T 98 2605 4277 4293 4272 * * * * 3124 * * 4304 * * * 4347 2516 2436 4053 4412 98 0 * * * * 0 * 3069 0 1000 V 99 4532 * * 2756 4187 * * * 3104 4445 * * * * 2155 * 2482 2411 * * 99 69 * 4425 * * * * 3125 0 0 A 100 2050 4174 * * * 4356 * * * * * * * * * * * 749 4072 * 100 0 * * * * * 0 3104 0 1000 H 101 4311 * * 4311 * * 2816 3328 4432 3151 * * * 3410 3225 4440 4292 2826 * 4072 101 0 * * * * 0 * 3104 0 1000 L 102 1917 3337 * * 4445 2547 * * * 3529 * * * * * * 3443 2055 * * 102 60 * 4617 * * * * 3125 0 0 K 103 4153 * * * * 3358 * * 2417 * * * * 4304 1576 3265 4288 3086 * * 103 0 * * * * * 0 3116 0 1000 L 104 3133 * * * * * * 4442 * 753 2019 * * * * * * * * * 104 0 * * * * 0 * 3116 0 1000 E 105 * * * 1126 * * * * 2768 * * 3870 * 4467 2493 * 3270 * * * 105 0 * * * * * * 3125 0 0 Y 106 * * * * 2304 * * * * 4187 2480 * * * * * * * 4436 952 106 220 * 2823 * * * * 3125 0 0 I 107 2571 * 1981 * * * * 1697 * 4170 * 4102 * * * * * 2678 * * 107 0 * * * * * 0 3064 0 1744 P 108 4030 * * 1496 * 4034 * * 2531 * 3335 * 1994 * * * * * * * 108 91 * 4034 * * 0 * 3064 0 1744 E 109 * * 2816 534 * 3823 * * 3370 * * * * * * * * * * * 109 0 * * * * * 0 3066 0 1000 I 110 * * 2410 * * * * 4607 * 1112 2359 3146 * * * * * * * * 110 0 * * * * 0 * 3066 0 1000 D 111 * * 1079 * * 1818 * * 3433 * * 3288 * * 4377 * * * * * 111 0 * * * * * * 3125 0 0 Y 112 * * * * 3618 * * * * * * * * * * * * * * 123 112 0 * * * * * * 3125 0 0 P 113 * * * * * * * * * * * 3618 123 * * * * * * * 113 0 * * * * * * 3125 0 0 L 114 * * * * * * * * * 195 4186 * * * * * * 3806 * * 114 0 * * * * * * 3107 0 0 X 115 3441 * * * * * * * * * 139 * * * * * * * * * 115 0 * * * * * * 3054 0 0 Y 116 * * * 4298 4231 * * * 2206 * * * * * 3426 4140 * * 3992 1100 116 0 * * * * * * 3051 0 0 V 117 3733 * * * * * * 1122 * 2845 * * * * * * * 1616 * * 117 0 * * * * * * 3051 0 0 K 118 3426 * 4265 1688 * * * 4070 1877 4083 * * * 4140 * * * 3366 * * 118 0 * * * * * * 3051 0 0 K 119 4298 * 2349 998 * * * * 2745 * * * * 4140 * 4437 * * * * 119 0 * * * * * * 3051 0 0 F 120 * 3696 * * 4226 * * 583 * * * * * * * * * 2310 * * 120 0 * * * * * * 2965 0 0 E 121 * * 2128 1059 * * 3198 * 2455 * * * * * * * * * * * 121 0 * * * * * * 2694 0 0 E 122 * * * 215 * * * * * * * * * 2850 * * * * * * 122 0 * * 0 * * * 2474 0 0 //