HHsearch 1.5 NAME c2n5uA_ FAM FILE c2n5uA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2n5uA_.a3m DATE Sat Apr 16 08:16:20 2016 LENG 79 match states, 79 columns in multiple alignment FILT 16 out of 20 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.3946 -0.2332 SEQ >ss_dssp CCTTCCCCCSSGGGTCCTTCEEEECCCCSCCCTTHHHHBTCEEEEEEEEECSSSSEEEEEEETTSCEEEEETTTEEEEC >sa_dssp EDEEDEEECDDBEDEBDEDCDADACECDDEEDEEDEDADDCDBDADBCDECEEDDCAADADBECEDECDABCDBBCDDE >ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEEEHHCCCHHHHHHHCCEEEEEEEEEECCCEEEEEEEECCCCEEEECHHHHEECC >ss_conf 9865570079888402446657764220004889999724934899999871870389999759960461276620039 >Consensus xxxxxxxxxxkxxxxxxIGqkVkVxxxkDRixxxlxxxlgxxgxIxdyKmtDGxgIGxivxfxdxxxxWFFedEixxvx >c2n5uA_ MASWSHPQFEKIEGRMDVGQKVRVCRIRDRVAQDIIQKLGQVGQITGFKMTDGSGVGVIVTFDDRSSTWFFEDEVEVVG >UniRef50_Q2JXF9(14-76:86) Putative uncharacterized protein n=1 Tax=Synechococcus sp. JA-3-3Ab RepID=Q2JXF9_SYNJA E=8e-17 s/c=1.40 id=47% cov=81% ---------------IKVGDKVRVRSIRDRGQEEVSALVGKEGVVLARRVVDGSGIGYILEFPDRSRHWFFESEVEEV- >UniRef50_P51282(1-60:65) Uncharacterized protein ORF65 n=1 Tax=Porphyra purpurea RepID=YCXG_PORPU E=1e-06 s/c=0.90 id=34% cov=77% ---------------MLIGQKVRIKYSKSKIANDIAVRVGDIGVIRGIKFINNQCVTIIVEFENHTRLWMFREEL---- >UniRef50_Q7VDF2(12-76:77) Uncharacterized protein n=2 Tax=Prochlorococcus marinus RepID=Q7VDF2_PROMA E=2e-06 s/c=0.82 id=34% cov=78% ----------------RIGSRIKIdlDKVQDRISSNLIKKIysDPRATVTDYKMTDGGGVGLVVKLADGTKNWFFENEIGP-- >UniRef50_B4WSL1(3-67:68) Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSL1_9SYNE E=4e-14 s/c=1.21 id=45% cov=82% ---------------LEVGQRVQVRRMRDRVDKKLAARLGETAVIQDFKVLDGQNIGALVSFEsDDFTTWFFEDELRPVA >UniRef50_Q7VBT8(6-74:77) Uncharacterized protein n=4 Tax=Prochlorococcus marinus RepID=Q7VBT8_PROMA E=2e-12 s/c=1.06 id=30% cov=84% -------------SKLKKGQKLKVdlDKLNDRLPKNVLNLLKNEpiGLLVGYKMVDGNQFGLVLQLKSGLNQWFFEDELCEI- >UniRef50_Q7VCL8(6-76:125) Uncharacterized protein n=1 Tax=Prochlorococcus marinus RepID=Q7VCL8_PROMA E=8e-12 s/c=1.01 id=35% cov=78% ----------------EVGSIVSIDpsKIKDRVSPELIELLNDRpnGKIVGYRITDGTQIGLILELSNGKTVWFFQDEIKE-- >UniRef50_A9B9T5(7-58:114) Putative uncharacterized protein n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9B9T5_PROM4 E=2e-09 s/c=1.22 id=36% cov=63% --------------------------IADRGTENLRRELGDnpSGTVIDYKITDGTDIGFFIRFNDNSTRWFFKNEI---- >UniRef50_Q46L94(7-72:132) Putative uncharacterized protein n=2 Tax=Prochlorococcus marinus RepID=Q46L94_PROMT E=1e-05 s/c=0.77 id=33% cov=46% ------------------------------------------GEIVDYKMTDGMGIGYVLMTKNNLKIWIFDTELKE-- >UniRef50_A2BXG7(2-73:142) Putative uncharacterized protein n=9 Tax=Prochlorococcus marinus RepID=A2BXG7_PROM5 E=1e-11 s/c=0.98 id=32% cov=87% ----------KIFERAKIGSTVQIKldLAKNRLEKESLKAIEasSICKIIDFKITDGKGIGVILKLSNGKEEWFFEEEIDVL- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 A 2 0 * * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 S 3 * * * * * * * * * * * * * * * 0 * * * * 3 0 * * * * * * 1000 0 0 W 4 * * * * * * * * * * * * * * * * * * 0 * 4 0 * * * * * * 1000 0 0 S 5 * * * * * * * * * * * * * * * 0 * * * * 5 0 * * * * * * 1000 0 0 H 6 * * * * * * 0 * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 P 7 * * * * * * * * * * * * 0 * * * * * * * 7 0 * * * * * * 1000 0 0 Q 8 * * * * * * * * * * * * * 0 * * * * * * 8 0 * * * * * * 1000 0 0 F 9 * * * * 0 * * * * * * * * * * * * * * * 9 0 * * * * * * 1000 0 0 E 10 * * * 0 * * * * * * * * * * * * * * * * 10 0 * * * * * * 1000 0 0 K 11 * * * * * * * * 0 * * * * * * * * * * * 11 0 * * * * * * 1857 0 0 I 12 1672 * * * * * * 543 * * * * * * * * * * * * 12 0 * * * * * * 1857 0 0 E 13 * * * 1707 1396 * * * 1672 * * * * * * * * * * * 13 0 * * * * * * 1857 0 0 G 14 2189 * * 1819 * 2140 * * * * * * * * * 1886 * * * * 14 0 * * * * * * 2242 0 0 R 15 * * * * * 2404 * * 1268 * * * * * 1337 * * * * * 15 0 * * * * * * 2342 0 0 M 16 3145 * * * * * * 2498 * 2073 1449 * * * * * * 3237 * * 16 0 * * * * * * 2999 0 0 D 17 * * 4069 1796 * * * * 1344 2952 * * * * 2950 * * * * * 17 0 * * * * * * 3166 0 0 V 18 * * * * * * * 686 3495 * * * * * * * * 1787 * * 18 0 * * * * * * 3166 0 0 G 19 * * * * * 0 * * * * * * * * * * * * * * 19 0 * * * * * * 3166 0 0 Q 20 * * 3502 * * * * * * * * 3883 * 1001 * 1538 * * * * 20 0 * * * * * * 3166 0 0 K 21 * * * * * * * 3927 750 * * * * * 2755 * 2384 * * * 21 0 * * * * * * 3166 0 0 V 22 * * * * * * * 3798 * 3495 * * * * * * * 253 * * 22 0 * * * * * * 3166 0 0 R 23 * * * * * * * * 1156 * * * * 2729 1580 3927 * * * * 23 112 3746 * 2000 415 * * 3166 1000 0 V 24 * * * * * * * 1265 * * * * * * * * * 776 * * 24 253 2638 * 1000 1000 * * 3166 1548 0 C 25 * 4069 2143 * * * * * 2294 * * 2813 * * 2604 4120 * * * 2776 25 337 2264 * 1000 1000 * * 3166 1615 0 R 26 * * * * * * * * 1733 2812 * * * * 1560 3502 * * * 2952 26 0 * * * * * * 3166 0 0 I 27 3835 * * * * * * 1928 * 2189 3808 * * * * 2426 * 2394 * * 27 0 * * * * * * 3262 0 0 R 28 3906 * * * * * * * 1373 * * 3573 * 3911 1333 * * * * * 28 0 * * * * * * 3262 0 0 D 29 * * 312 * * * * * * * * 3835 * * * 3004 * * * * 29 0 * * * * * * 3262 0 0 R 30 * * * * * * * * 3004 * * * * * 192 * * * * * 30 0 * * * * * * 3262 0 0 V 31 * * * * * 2766 * 2029 * 1809 * * * * * * * 1632 * * 31 0 * * * * * * 3262 0 0 A 32 2468 * 3808 3835 * * * * * * * * 2267 3639 * 1934 2964 * * * 32 0 * * * * * * 3262 0 0 Q 33 3014 * * 2766 * * * * 1590 * * 3004 2739 4158 * 3911 * * * * 33 0 * * * * * * 3262 0 0 D 34 4372 * 1901 1880 * * * * 2357 * * 2203 * * * * * * * * 34 0 * * * * * * 3262 0 0 I 35 * * * * * * * 2145 * 1365 * * * * * 3835 4025 1976 * * 35 0 * * * * * * 3262 0 0 I 36 2351 * * * * * * 1672 * 2698 * * * * 3906 3639 * 2402 * * 36 0 * * * * * * 3262 0 0 Q 37 2721 * 3116 2514 * 4585 * * 2873 * * 3573 * 4158 3906 4372 * 3004 * * 37 0 * * * * * * 3262 0 0 K 38 2927 * * 3906 * * * * 1956 1847 * * * 3837 2351 * * * * * 38 0 * * * * * * 3262 0 0 L 39 * * * * * * * 1900 * 924 * * * * * * * 2287 * * 39 212 2874 * 1000 1000 * * 3262 1382 0 G 40 * * 3911 3835 * 904 * * 2859 * * 2387 * * * * * * * * 40 296 2432 * 1000 1000 * * 3262 1682 0 Q 41 * * 1713 3808 * * * * 2554 * * 3573 2874 3302 * 2927 * * * * 41 100 3906 * 1000 1000 * * 3262 1000 0 V 42 * * * 2148 * * * 2041 * * * * * 4463 2349 3906 3808 2722 * * 42 224 2797 * 1000 1000 * * 3262 1487 0 G 43 2973 3034 * * * 558 * * * * * * * * * * * 3808 * * 43 0 * * * * * * 3440 0 0 Q 44 * * * 4307 * * * 4399 3100 3744 * * * 4322 4390 * 2118 1386 * * 44 0 * * * * * * 3440 0 0 I 45 * * * * * * * 837 * 3744 * * * * * * 3808 1765 * * 45 0 * * * * * * 3440 0 0 T 46 * * * * * * * 2803 3611 3759 * * * 3830 2970 4187 1871 2518 * * 46 0 * * * * * * 3440 0 0 G 47 3044 * 1127 * * 1249 * * * * * * * * * * * * * * 47 0 * * * * * * 3440 0 0 F 48 * * * * 1428 * * 2970 * * * * * * 3759 * * * * 1228 48 0 * * * * * * 3440 0 0 K 49 * * * * * * * * 190 * * * * * 3020 * * * * * 49 0 * * * * * * 3440 0 0 M 50 * * * * 2970 * * 2014 * * 1057 * * * * * * 2794 * * 50 0 * * * * * * 3440 0 0 T 51 * * * * * * * 2970 * 3830 * * * * * * 614 2751 * * 51 0 * * * * * * 3440 0 0 D 52 * * 197 * * * * * * * * 2970 * * * * * * * * 52 0 * * * * * * 3440 0 0 G 53 * * * * * 197 * * * * * 2970 * * * * * * * * 53 0 * * * * * * 3440 0 0 S 54 * * * * * 4133 * * 3895 * 2707 3744 * 2336 3808 1982 2994 * * * 54 0 * * * * * * 3440 0 0 G 55 * 2970 3716 * * 915 * * * * * 3830 * 3011 * 3808 * * * * 55 0 * * * * * * 3440 0 0 V 56 * * * * 3744 * * 636 * * * * * * * * * 1826 * * 56 0 * * * * * * 3440 0 0 G 57 * * * * * 197 * * * * * * * * * * 2970 * * * 57 0 * * * * * * 3440 0 0 V 58 2325 * * * 3716 * * 2329 * 2128 * * * * * * * 2539 * 3007 58 0 * * * * * * 3440 0 0 I 59 * * * * 2487 * * 1442 * 3830 * * * * * * 3808 1682 * * 59 0 * * * * * * 3440 0 0 V 60 * * * * * * * 3716 * 1432 * * * * * * * 854 * * 60 0 * * * * * * 3440 0 0 T 61 * * * 1552 * * * * 2354 * 4307 4187 * 3034 3716 3187 4322 * * * 61 0 * * * * * * 3440 0 0 F 62 * * * * 924 * * * * 1244 * * * * * * 4307 * * * 62 0 * * * * * * 3440 0 0 D 63 4133 * 3483 2027 * * * * 2577 * * 3716 3759 3808 * 2189 * * * * 63 105 3830 * 0 * * * 3440 1000 0 D 64 * * 988 * * * * * * * * 1248 * * * 3744 * * * * 64 0 * * * * * * 3440 0 0 R 65 * * 3830 * * 1244 2970 * 4561 * * 2981 * * 2247 * * * * * 65 0 * * * * * * 3440 0 0 S 66 * * * 3808 3830 * * * 2543 2998 * * * * * 2015 1670 * * * 66 0 * * * * * * 3440 0 0 S 67 2952 * * 2851 * * * * 3217 * * 2949 * * 2311 4322 2352 4390 * * 67 0 * * * * * * 3440 0 0 T 68 * * * 3034 * * 3759 4307 * 2970 * 2962 * 3744 3716 4390 2271 3446 * * 68 0 * * * * * * 3440 0 0 W 69 * * * * * * * * * * * * * * * * * * 0 * 69 0 * * * * * * 3440 0 0 F 70 * * * * 283 * * 4307 * * 2970 * * * * * * * * * 70 0 * * * * * * 3440 0 0 F 71 * * * * 0 * * * * * * * * * * * * * * * 71 0 * * * * * * 3440 0 0 E 72 * * 3347 793 * * * * 3716 * * * 3808 4339 2970 * * * * * 72 0 * * * * * * 3440 0 0 D 73 * * 1247 1909 * * * * * * * 2411 * * * 3759 4307 * * * 73 0 * * * * * * 3440 0 0 E 74 * * * 0 * * * * * * * * * * * * * * * * 74 0 * * * * * * 3440 0 0 V 75 * * * * * * * 1411 * 1144 * * * * * * * 2543 * * 75 0 * * * * * * 3440 0 0 E 76 * 3378 3524 1948 * 3555 * * 1720 * * * * 3676 3459 * * * * * 76 0 * * * * * * 3017 0 0 V 77 4075 * * 1487 * * * 3526 * * * * 1935 * * * * 2085 * * 77 0 * * * * * * 2936 0 0 V 78 * * * * * * * 2141 * 1565 * * * * * * * 1200 * * 78 0 * * * * * * 2730 0 0 G 79 1000 * * * * 1000 * * * * * * * * * * * * * * 79 0 * * 0 * * * 1461 0 0 //