HHsearch 1.5 NAME c2n5nA_ FAM FILE c2n5nA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2n5nA_.a3m DATE Sat Nov 21 08:20:49 2015 LENG 86 match states, 86 columns in multiple alignment FILT 13 out of 17 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.5 EVD 0.3994 -0.5552 SEQ >ss_dssp CCCCSSSSCCCHHHHHHHTTCCCCCCCCCHHHHHHCCSHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHCCCSSTTSCC >sa_dssp EEEDEEEEDDCBDDCAEECEDECCECEBDDECBEECDDDEBACEDADDDACECAEEBDEEDADEABDBBCECADEECEDEBCEEEE >ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC >ss_conf 98520000201999999738865641005888854452898999999999653889879999999999999974378867652469 >Consensus xxxxxxkxxKSSxelxaxxglxDVexxyseEdyxtlTnyKxFSQxVrPlIakxNPkixxsKmxxixxAKWrEFsxxnpxxxxxxxx >c2n5nA_ GPLGSSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGAS >UniRef50_C1LZY0(61-134:1966) Chromodomain helicase DNA binding protein, putative n=1 Tax=Schistosoma mansoni RepID=C1LZY0_SCHMA E=9e-26 s/c=1.58 id=44% cov=87% -----SKKEKTVDQLCEELGIDDVEMTYSTEDFENWTIQKLFDQYVRPLIANKNPNASKEDVQKVLDAKWKEFAIMNPY------- >UniRef50_B7PLQ0(126-196:1882) Chromodomain helicase DNA binding protein, putative n=1 Tax=Ixodes scapularis RepID=B7PLQ0_IXOSC E=2e-24 s/c=1.59 id=43% cov=84% -------QHKSSTEVCAELGLQDVPMEYTDADYQNLTSYKLFSQHVRPLVTKANPKIAMAKIVLLISAKWHEFLRDNP-------- >UniRef50_B3NE02(123-190:711) GG13363 n=1 Tax=Drosophila erecta RepID=B3NE02_DROER E=1e-15 s/c=1.24 id=45% cov=80% ----------SVEDVCSAFSVCDVEIEYSEEELQSLTTYKAFMQHVRPILQKENPKIAAPKLMMLVAAKWREFCESNP-------- >UniRef50_Q22516(83-155:1787) Chromodomain-helicase-DNA-binding protein 3 homolog n=3 Tax=Chromadorea RepID=CHD3_CAEEL E=2e-08 s/c=0.82 id=34% cov=74% ----------TSAEISAAIGLTDVDVDYEQEEFQSITNLKNFSSLVKPYILKVNPGTNVTKMYPLFQVKYKEF------------- >UniRef50_UPI000180CCFF(126-198:1904) PREDICTED: similar to chromodomain helicase DNA binding protein 3 n=1 Tax=Ciona intestinalis RepID=UPI000180CCFF E=4e-24 s/c=1.53 id=39% cov=86% ------KDLKSSAELIAEWNLQPFEHEHDEQDYSTLTTYRLFSQHIKPMLARVYPRLPISRTLTIVAAMWREFSNSPKF------- >UniRef50_A8X9E2(80-142:1863) C. briggsae CBR-LET-418 protein n=2 Tax=Caenorhabditis briggsae RepID=A8X9E2_CAEBR E=7e-17 s/c=1.40 id=30% cov=74% ----------SSEEVCAAIGLTDVQFDYDLEEFQGITNLKNFSAVVKAQILEANPGTNVSKLYPMYQVKYKEY------------- >UniRef50_Q4SNF1(3-239:1989) Chromosome 8 SCAF14543, whole genome shotgun sequence. (Fragment) n=6 Tax=Euteleostomi RepID=Q4SNF1_TETNG E=7e-42 s/c=0.40 id=74% cov=101% DDDEEDCQPKSSAQLLETWGMKDIDHVFTQEDYNSLTNYKAFSQFVRPLIAAKNPKIAVSKMMTLMMAKWREFSTNNPLKGSATAN >UniRef50_B5DFS1(165-320:369) Putative uncharacterized protein (Fragment) n=1 Tax=Xenopus (Silurana) tropicalis RepID=B5DFS1_XENTR E=2e-38 s/c=0.51 id=72% cov=93% -------EQKSSAVLLASWGLEDVDYVFTDEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKSSPAAV >UniRef50_Q6DGH4(85-268:340) LOC553422 protein (Fragment) n=4 Tax=Euteleostomi RepID=Q6DGH4_DANRE E=2e-39 s/c=0.62 id=69% cov=98% DDDGNMKEPKSSSQLMQEWSLEDVQYAFSEDDYKTITNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGTS--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * 700 * * 2388 * * * * * 2369 * * * * * * * * 1 0 * * * * * * 1426 0 0 P 2 * * 306 * * * * * * * * * 2388 * * * * * * * 2 0 * * * * * * 1426 0 0 L 3 * * 306 * * * * * * 2388 * * * * * * * * * * 3 0 * * * * * * 1426 0 0 G 4 * * 2359 2259 * 746 * * * * * * * * * * * * * * 4 0 * * * * * * 1426 0 0 S 5 * 2369 2359 2259 * * * * * * * 2241 * * * 2388 * * * * 5 0 * * * * * * 1426 0 0 S 6 * * 2674 * * 2861 * * * 2855 2677 * * * * 1283 * * * * 6 0 * * * * * * 1740 0 0 K 7 * 3085 * * * * * * 363 * * * * 3254 * * * * * * 7 0 * * * * * * 2091 0 0 E 8 * * 2402 1271 * * * * 2482 * * * * 2201 * * * * * * 8 0 * * * * * * 2244 0 0 P 9 * * * 2482 * * 2828 * * 2402 * * 1486 2900 * * * * * * 9 0 * * * * * * 2244 0 0 K 10 * * * * * * * * 0 * * * * * * * * * * * 10 0 * * * * * * 2244 0 0 S 11 * * * * * * * * * * * * * * * 362 2173 * * * 11 0 * * * * * * 2702 0 0 S 12 * * * * * * * * * * * * * * * 354 * 2201 * * 12 0 * * * * * * 2702 0 0 A 13 1235 * 3073 2209 * 4440 * * * * * * * * * 3277 3462 * * * 13 0 * * * * * * 2702 0 0 Q 14 * * 3342 1172 * * * * * * * * * 1463 * * 4398 4400 * * 14 0 * * * * * * 2702 0 0 L 15 * * * * * * * 3280 * 761 * * * * * * * 1703 * * 15 0 * * * * * * 2702 0 0 L 16 * 1232 * * * * * 2918 * 2081 3285 * * * * 3280 * * * * 16 0 * * * * * * 2702 0 0 E 17 776 * * 2227 * * * * * 4398 * * * 4145 * 3342 * * * * 17 0 * * * * * * 2702 0 0 D 18 1647 * 3448 1170 * * * * * * * * * * * 4400 3362 * * * 18 0 * * * * * * 2702 0 0 W 19 * * * * 3342 * * 2180 * 2255 * * * * * * * * 1086 * 19 0 * * * * * * 2702 0 0 G 20 * * * * * 489 * * * * * 2918 * * * 2689 * * * * 20 0 * * * * * * 2702 0 0 M 21 * * * * * * * 3073 * 641 2821 * * * * * * 3342 * * 21 0 * * * * * * 2702 0 0 E 22 * 3342 2601 2349 * * * * 3374 * * * * 2164 * * 2180 * * * 22 0 * * * * * * 2702 0 0 D 23 * * 205 * * * * * * * * * 2918 * * * * * * * 23 0 * * * * * * 2702 0 0 I 24 * * * * 2918 * * 2821 * * * * * * * * * 462 * * 24 0 * * * * * * 2702 0 0 D 25 * * 1566 1332 * * * * * * * * 3462 2521 * * * * * * 25 0 * * * * * * 2702 0 0 H 26 * * * * 3087 * 1864 3342 * * 2255 * * * * * * 3280 * 2347 26 0 * * * * * * 2702 0 0 V 27 4145 * 2180 1636 * * * * * 4440 * * * * * * 2596 2399 * * 27 0 * * * * * * 2702 0 0 F 28 * * * * 1561 * 2918 * * * * * * * * * * * * 919 28 0 * * * * * * 2702 0 0 S 29 * * 2000 3280 * * * * * * * * * * * 1278 2092 * * * 29 0 * * * * * * 2702 0 0 E 30 * * 2856 1231 * * * * * 3087 * * * 2326 * * 3073 * * * 30 0 * * * * * * 2702 0 0 E 31 3462 * 4145 473 * * * * * * * * * 2918 * * * * * * 31 0 * * * * * * 2702 0 0 D 32 * * 555 1647 * * * * * * * * * * * * * * * * 32 0 * * * * * * 2702 0 0 Y 33 * * * * 1559 * * * * 3342 * * * * * * * * * 832 33 0 * * * * * * 2702 0 0 R 34 * * * 3073 * * 2827 * 4145 * * 3374 * 1286 4474 2918 * * * * 34 0 * * * * * * 2702 0 0 T 35 * * * * * 3087 * * * * * 2255 * * * 1746 1416 * * * 35 0 * * * * * * 2702 0 0 L 36 * * * * * * * 1851 * 727 * * * * * * * * 3073 * 36 0 * * * * * * 2702 0 0 T 37 * * * * * * * * * * * * * * * * 0 * * * 37 0 * * * * * * 2702 0 0 N 38 * * * * * * * 3073 * * * 838 * * * 3462 2114 * * * 38 0 * * * * * * 2702 0 0 Y 39 * * * * * * * * * 2180 * * * 3073 * * * * * 598 39 0 * * * * * * 2702 0 0 K 40 * * * * * * * * 205 * * * * * 2918 * * * * * 40 0 * * * * * * 2702 0 0 A 41 1193 * * * * * * * * 1548 * 2180 * * * * * * * * 41 0 * * * * * * 2702 0 0 F 42 * * * * 0 * * * * * * * * * * * * * * * 42 0 * * * * * * 2702 0 0 S 43 * * 3073 * * * * * * * 3342 * * * * 354 * * * * 43 0 * * * * * * 2702 0 0 Q 44 3087 * * * * * * * * * * * * 360 * 3280 * * * * 44 0 * * * * * * 2702 0 0 F 45 * * * * 1561 * 1636 * * 3280 * * * * * * * 3087 * 3073 45 0 * * * * * * 2702 0 0 V 46 * * * * * * * 2918 * 3285 3399 * * * * * * 577 * * 46 0 * * * * * * 2702 0 0 R 47 * * * * * * * * 1502 * * * * * 628 * * * * * 47 0 * * * * * * 2702 0 0 P 48 3087 * * * * * * * * * * * 181 * * * * * * * 48 0 * * * * * * 2702 0 0 L 49 * * * * * * * 3342 * 867 2918 * * 3087 * * * * * 3280 49 0 * * * * * * 2702 0 0 I 50 * * * * * * * 560 * 2114 * * * * * * * 3462 * * 50 0 * * * * * * 2702 0 0 A 51 761 * * * * * * * * 2180 * * * 3342 * * 3462 * * * 51 0 * * * * * * 2702 0 0 A 52 2821 * * 3087 * * * * 1030 * * 3073 * * 2918 * * * * * 52 0 * * * * * * 2702 0 0 K 53 2262 * * 3342 * * * * 1128 * * * * * * * * 2088 * * 53 0 * * * * * * 2702 0 0 N 54 * * * * * * * * * * * 205 * * * * * * * 2918 54 0 * * * * * * 2702 0 0 P 55 * * * * * * * * * * * * 0 * * * * * * * 55 0 * * * * * * 2702 0 0 K 56 * * * * * 2180 * * 921 * * 3073 * * 2918 * * * * * 56 0 * * * * * * 2702 0 0 I 57 3073 * * * * * * 921 * 2918 * * * * * * 2180 * * * 57 0 * * * * * * 2702 0 0 A 58 1596 * * * * * * * * * * 2180 1601 * * 3073 * * * * 58 0 * * * * * * 2702 0 0 V 59 3342 * * * * * * 2918 3073 * 1795 * * * * * * 1465 * * 59 0 * * * * * * 2702 0 0 S 60 3462 * * 3073 * * * * * * * * 3342 * * 764 3280 * * * 60 0 * * * * * * 2702 0 0 K 61 * * 3073 * * * * * 417 * * * * * 2918 * * * * * 61 0 * * * * * * 2702 0 0 M 62 * * * * * * * 3462 * 2209 1179 * * * * * 2918 3073 * * 62 0 * * * * * * 2702 0 0 M 63 * * * * * * * * * 2918 1193 * * 3073 * * * 3462 * 2180 63 0 * * * * * * 2702 0 0 M 64 * * * * * * * * 3073 3462 2394 * 2180 * * * 1398 * * * 64 0 * * * * * * 2702 0 0 V 65 * * * * * * * 2138 * 1547 3087 * * * * * * 1676 * * 65 0 * * * * * * 2702 0 0 L 66 * * * * 3280 * * 3462 * 1294 4326 * * * * * * 2114 * 3087 66 0 * * * * * * 2702 0 0 G 67 2114 * 3073 * * 1791 * * * * 4326 * * 2180 * 3462 * * * * 67 0 * * * * * * 2702 0 0 A 68 360 * * * * * * * * * * * * * * * * 2180 * * 68 0 * * * * * * 2702 0 0 K 69 * * * * * * * * 205 * 2918 * * * * * * * * * 69 0 * * * * * * 2702 0 0 W 70 * * * * * * * * * * * * * * * * * * 360 2180 70 0 * * * * * * 2702 0 0 R 71 * * * * * * 3462 * 1559 * * * * * 811 * * * * * 71 0 * * * * * * 2702 0 0 E 72 * * * 0 * * * * * * * * * * * * * * * * 72 0 * * * * * * 2702 0 0 F 73 * * * * 181 * * * * * * * * * * * * * * 3087 73 0 * * * * * * 2702 0 0 S 74 2679 2989 * * * * * * * 3057 * * * * * 742 * * * * 74 0 * * * * * * 2383 0 0 T 75 2019 * * 2989 * * * 2679 * * * 2555 * * 3057 * 2467 * * * 75 0 * * * * * * 2383 0 0 N 76 * * 3057 * * * * * * * 2679 1226 * * * 1756 * * * * 76 0 * * * * * * 2383 0 0 N 77 * * * * * * * * * * * 269 2555 * * * * * * * 77 0 * * * * * * 2383 0 0 P 78 * * * * * * * * 2555 * * * 269 * * * * * * * 78 0 * * * * * * 2383 0 0 F 79 * * * * 706 * * * * 3447 3621 * * * * * * * * 2224 79 0 * * * * * * 2092 0 0 K 80 * * * * * * * * 226 * * * * * 2787 * * * * * 80 0 * * * * * * 1392 0 0 G 81 * * * * * 223 * * * * * * * * * 2806 * * * * 81 0 * * * * * * 1392 0 0 S 82 * * * * * * * * * * * * * * * 248 2663 * * * 82 0 * * * * * * 1392 0 0 S 83 1201 * * * * * * * * * * * 2806 * * 1245 * * * * 83 0 * * * * * * 1392 0 0 G 84 1310 * * * * 2390 * * * * * * * * * 2301 2301 * * * 84 0 * * * * * * 1343 0 0 A 85 0 * * * * * * * * * * * * * * * * * * * 85 0 * * * * * * 1343 0 0 S 86 * * * * * * * * * * * 1301 * * * 2390 * 1310 * * 86 0 * * 0 * * * 1343 0 0 //