HHsearch 1.5 NAME c2n4pA_ FAM FILE c2n4pA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2n4pA_.a3m DATE Sat Jan 23 08:25:07 2016 LENG 89 match states, 89 columns in multiple alignment FILT 21 out of 25 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.3852 -1.0397 SEQ >ss_dssp CCCCTTCCCSSCCCCCEEEBSSSSSCCEEECCCSSSCBCHHHHHHHSTTCCEEEEECTTTCCCCBCEEETTEEECCSSCCCSCEEEEEC >sa_dssp EEEEEEEEEEEDEEEDADABDDEEEECEDBECCDECCAEDDBADDEBEEADBAEBECDEDEEEECBEDDEBDADBCEECBDECCAECDE >ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCEEEEECCCCCCCEEEEEECCCEEECCCCCCCCEEEEEEC >ss_conf 97664322367631279976368885688643568818876543027871467861776550575882388996688866876899989 >Consensus xxxxxxxxxxxxxxxyIxVxxxexxepiEIPlexDgtLxlsTLxaqFPgAxGLKYRnpxtxxxRxvrlxxxklxaPxxGWxxxxyxvvx >c2n4pA_ MAGSHHHHHHGSMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNY >UniRef50_C4WXR5(6-80:333) ACYPI004992 protein n=2 Tax=Acyrthosiphon pisum RepID=C4WXR5_ACYPI E=7e-09 s/c=0.82 id=41% cov=84% --------------KYIPVCECEGEDFMEIPLESDGTLSTATLSAYFPGVTGLKFRLDSYSPYRALRLYDGKFHAPEGSWaGHKFYCVH- >UniRef50_B2L3J4(2-80:196) TAR protein (Fragment) n=1 Tax=Philodina roseola RepID=B2L3J4_9BILA E=1e-08 s/c=0.77 id=45% cov=84% ---------------FIRVVDESTDdnEIVEIPLDggADAFLSLSTLAAQFQGVTALKYRHPETSVWRGVRVVDGKLYHPDGRWDpDMVYVTVY >UniRef50_A8P5Z6(32-109:159) Tardbp-prov protein, putative n=1 Tax=Brugia malayi RepID=A8P5Z6_BRUMA E=9e-20 s/c=1.25 id=36% cov=85% --------------EYVVVSETEESERLELPlLPEDCSLSLNTLVHAFPGAHGLKYKNSITGASRALLMDPQgtRFLAPPDGWKNKTFIVIY >UniRef50_UPI0001925852(16-88:264) PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001925852 E=1e-15 s/c=1.15 id=47% cov=81% ---------------YVKVADDDHvTDVIEIPTEKDGTIMLSTIQAQFPNAIGLKYKGS-SGAWRGVRISGNILDPPFEGWGENVFCT-- >UniRef50_UPI000180B036(159-228:467) PREDICTED: similar to zinc finger, B-box domain containing, partial n=1 Tax=Ciona intestinalis RepID=UPI000180B036 E=5e-05 s/c=0.70 id=33% cov=79% --------------KWISVAlDRSHDEIMEIQSDMQGNLPLSSLHGIEPSAVGLYF--LRWSRKRLLPAVDNKVMMPKSGWGNEVY---- >UniRef50_C4QB59(2-80:457) Tar DNA-binding protein, putative n=3 Tax=Schistosoma mansoni RepID=C4QB59_SCHMA E=8e-26 s/c=1.49 id=46% cov=89% -----------QLTRYVKICETEDDQPIEVPLEDDDTLLLSTLTAQFPDCTGLKYRSGDSGCYRGVRLLDDRLFPPTDGqWHGNTFCCVF >UniRef50_A8P6B0(42-123:408) RNA recognition motif domain containing protein n=1 Tax=Brugia malayi RepID=A8P6B0_BRUMA E=1e-20 s/c=1.22 id=34% cov=89% ----------GEEVDHVCVCATEDEDctPLELPLASDGTLPCFTLSHSFPKAVGLKYKNPATGLFRSLPVDEGkkCVLAPKGGWHGHRYVAI- >UniRef50_Q18266(17-79:522) Putative uncharacterized protein n=6 Tax=root RepID=Q18266_CAEEL E=2e-16 s/c=1.38 id=29% cov=71% -------------------------EPVEVELDEDAGILWTSLQTAFPGCSGMYYREIGDSCKKSVKFDGKKFMAPGGAWNDREYFV-- >UniRef50_Q8MQ42(19-81:575) Putative uncharacterized protein n=3 Tax=Caenorhabditis RepID=Q8MQ42_CAEEL E=1e-14 s/c=1.29 id=27% cov=72% -------------------------EPVQVSHDQDATLNFATVQSVVPGAHGLYYRDDGERKALLFDNNTGKVYPPPNGWDSVPIFIH- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 A 2 0 * * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 G 3 * * * * * 0 * * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 S 4 * * * * * * * * * * * * * * * 0 * * * * 4 0 * * * * * * 1000 0 0 H 5 * * * * * * 0 * * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 H 6 * * * * * * 0 * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 H 7 * * * * * * 0 * * * * * * * * * * * * * 7 0 * * * * * * 1000 0 0 H 8 * * * * * * 0 * * * * * * * * * * * * * 8 0 * * * * * * 1000 0 0 H 9 * * * * * * 0 * * * * * * * * * * * * * 9 0 * * * * * * 1000 0 0 H 10 * * * * * * 0 * * * * * * * * * * * * * 10 0 * * * * * * 1000 0 0 G 11 * * * * * 0 * * * * * * * * * * * * * * 11 0 * * * * * * 1573 0 0 S 12 * * * 1814 * * * * * * * * * 2072 * 1066 * * * * 12 0 * * * * * * 2039 0 0 M 13 * * * 1962 * 2271 * * * 2289 1593 * * * * * * * * * 13 0 * * * * * * 2069 0 0 S 14 1406 * * * * * * * * * * * * * * 2631 2289 1962 * * 14 0 * * * * * * 2069 0 0 E 15 * * 2615 1395 * * * * 1408 * * * * * 3652 * * * * * 15 84 4138 * 0 * * * 3136 1000 0 Y 16 * * * * 2084 * 4141 * * * * * * * * * * * 2629 874 16 0 * * * * * * 3417 0 0 I 17 * * * * * * * 950 * * * * * * * * * 1052 * * 17 0 * * * * * * 3417 0 0 R 18 * 4141 * * * * * * 3163 4041 * * 4117 3985 1708 2739 4092 2881 * * 18 0 * * * * * * 3417 0 0 V 19 * * * * * * * 4261 * * * * * * * * * 77 * * 19 93 3994 * 0 * * * 3417 1000 0 T 20 2084 2138 * * * * * * * * * * * 4092 * 1633 4742 3077 * * 20 131 3522 * 0 * * * 3417 1000 0 E 21 2090 * 1379 1708 * * * * * * * * * * * 3744 * * * * 21 0 * * * * * * 3417 0 0 D 22 3744 4117 2238 2154 * * * * * * * * 4092 * 3522 3985 2170 * * * 22 0 * * * * * * 3417 0 0 E 23 * * 2450 909 * * * 3744 * * * 4092 * * * 2725 * * * * 23 0 * * * * * * 3417 0 0 N 24 * * 2560 4032 * 1979 2771 * * * * 2397 * * * * 3077 * * 4041 24 262 2590 * 1196 828 * * 3417 1783 0 D 25 * * 1301 2237 * 4041 * * * * * 3994 * * * 2330 4072 * * * 25 96 3962 * 1000 1000 * * 3417 1000 0 E 26 * * 2326 1002 * * * * 3994 * * 4174 * 3552 * 3354 * * * * 26 69 4417 * 1000 1000 * * 3736 1000 0 P 27 3373 * * * 4363 3994 * 2555 * * 4174 * 1110 * 4251 * * 4296 * * 27 0 * * * * * * 3736 0 0 I 28 * * * * * * * 1238 * 2692 2736 * * * * * * 1883 * * 28 0 * * * * * * 3736 0 0 E 29 * * 4233 220 * * * * * * * * * 3506 * * * * * * 29 0 * * * * * * 3736 0 0 I 30 * * * * * * * 1147 * 2071 4233 * * * * * * 1959 * * 30 0 * * * * * * 3736 0 0 P 31 * * * 3025 * * * * * * * * 467 3892 * 3537 * * * * 31 74 4318 * 0 * * * 3726 1000 0 S 32 4466 * * * * * 3537 * * 1154 * * * * * 2979 2803 2747 * * 32 90 4054 * 0 * * * 3726 1000 0 E 33 4456 * 1562 1110 * * * * * * * * 3180 * * * * 4575 * * 33 144 4244 4575 1000 1000 * * 3726 1000 0 D 34 4233 * 1772 2080 * * * * 4266 * 3843 * * 2917 * 2612 * * * * 34 0 * * * * 0 * 3705 0 1000 D 35 * * 269 * * * 4090 * * * * 4439 * 3938 * * * * * * 35 0 * * * * * * 3734 0 0 G 36 2255 4350 3544 * * 722 * * * * * 4340 * * * * * * * * 36 0 * * * * * * 3734 0 0 T 37 * * * * 4294 3746 * * * * * 3071 * * * 3345 844 3323 * * 37 0 * * * * * * 3734 0 0 V 38 * * * * * * * 2596 * 538 * * * * * * * 2777 * * 38 0 * * * * * * 3734 0 0 L 39 * * * * * * 4090 * * 1340 3460 3573 2612 * * 2518 * * * 4916 39 0 * * * * * * 3734 0 0 L 40 * 4487 * * 3573 * * 4217 * 742 4602 * * * * * 4467 4090 3746 * 40 0 * * * * * * 3734 0 0 S 41 2106 * * * 4487 * * * * * * 4350 * * 4090 1001 3111 * * * 41 0 * * * * * * 3734 0 0 T 42 * * * * * * * * * * * 4547 * * * 2532 350 * * * 42 0 * * * * * * 3734 0 0 V 43 * * * * * * * 3460 * 527 * * * * * * * 2216 * * 43 0 * * * * * * 3734 0 0 T 44 3255 * * 4340 * * 3938 4563 3210 * * 4547 * 1849 * 3080 2811 4350 * * 44 0 * * * * * * 3734 0 0 A 45 1065 * * * * 3211 2762 * * * * 4090 * * * 2907 3746 * * * 45 0 * * * * * * 3734 0 0 Q 46 3016 * * * * * * 3938 * * * * * 1203 * 2841 * 2380 * 4467 46 0 * * * * * * 3734 0 0 F 47 * * * 3938 319 * * * * * * * * * * * * 3573 * 4340 47 0 * * * * * * 3734 0 0 P 48 * * * * * * * * 4090 * * * 216 4294 * * * * * 5089 48 0 * * * * * * 3734 0 0 G 49 * * 3395 4217 * 734 * * 4487 * * 4364 * * 4341 3217 * * * * 49 0 * * * * * * 3734 0 0 A 50 527 3173 * * * * * * * * * * * * * 4341 * 2780 * * 50 0 * * * * * * 3734 0 0 C 51 * 2638 * * * * 2910 2720 * * * * * * * 3051 1625 3187 * * 51 0 * * * * * * 3734 0 0 G 52 4294 * * * * 75 * * * * * * * * * * * * * * 52 0 * * * * * * 3734 0 0 L 53 * * * * * * * * * 112 3746 * * * * * * * * * 53 0 * * * * * * 3734 0 0 R 54 * * * * * * * * 560 * * * * * 3349 * * * * 2160 54 0 * * * * * * 3734 0 0 Y 55 * * * * 2066 * * * * * * * * * * * * * * 394 55 97 * 3938 * * * * 3734 0 0 R 56 * * * * * * * * 1985 4305 * * * * 521 * * * * * 56 78 * 4245 * * * 0 3608 0 1000 N 57 4228 * 3386 3515 * 4229 4106 * * 4339 * 1069 * * * 3799 4208 * * * 57 80 * 4208 * * 1000 1000 3602 0 1686 P 58 * * 2498 * * 4645 * 3564 * 3722 * * 1113 4187 * 3245 * * * * 58 76 * 4279 * * 0 * 3697 0 1448 V 59 4424 * 3325 1917 * 2615 * 4264 4507 * * * * 4367 3886 4409 4151 3183 * * 59 0 * * * * 0 * 3680 0 1000 S 60 * * 3746 3573 * * * * * * * 3002 * * * 2108 1418 * 3938 4467 60 0 * * * * * * 3734 0 0 Q 61 * * * * * 1390 4916 * * * * 3388 * 2832 3141 2083 * * * * 61 0 * * * * * * 3734 0 0 C 62 2245 2213 * * * 4563 * 4217 3573 3275 * * 4467 * 3125 * 4916 3365 * * 62 0 * * * * * * 3734 0 0 M 63 3573 * 4090 * 2871 * * 3802 2839 3599 4175 4602 * * * 4350 * 4439 3328 2885 63 0 * * * * * * 3734 0 0 R 64 * * * * * * * * 3746 3573 * * * * 249 * * * * * 64 0 * * * * * * 3734 0 0 G 65 2885 * * * * 1203 * 4340 * 2744 * * * * * 3069 4217 4090 * * 65 0 * * * * * * 3734 0 0 V 66 * * * * 3573 * * * * 1478 * * * * * * * 844 * * 66 0 * * * * * * 3734 0 0 R 67 4217 * 3573 * * * * * 3215 3214 * * 3187 4602 1012 * * * * * 67 0 * * * * * * 3734 0 0 L 68 3938 * * * 3746 * * 4364 * 1369 3214 3573 * * * * * 2103 * * 68 87 4090 * 1000 1000 * * 3734 1000 0 V 69 4439 * 1636 * * * * 4563 * 4781 * 2619 * * * 3352 * 2015 * 4467 69 61 4602 * 1000 1000 * * 3734 1000 0 E 70 * * 1539 1479 * 2606 * * * * * * 4350 * * * 3573 * * * 70 0 * * * * * * 3734 0 0 G 71 * * 3660 4563 4439 1279 * * 3746 4602 * 2804 * 3282 * * 4090 * * * 71 230 2762 * 1000 1000 * * 3734 1732 0 I 72 * 2670 * * * * * 2867 1031 * * * * * 2524 * * 4547 * * 72 0 * * * * * * 3734 0 0 L 73 * * * * 1870 * * 4217 * 1196 * * * * * * * 2082 * * 73 0 * * * * * * 3734 0 0 H 74 * * 4364 * 3544 * 2506 3323 * 3417 2839 * * * * * * * * 1489 74 0 * * * * * * 3734 0 0 A 75 1119 * * * * * 4294 * * * 3938 * 1406 * * * * 4439 * * 75 43 5089 * 1000 1000 * * 3734 1000 0 P 76 * * * * * * * * * * * * 0 * * * * * * * 76 128 3555 * 602 1551 * * 3734 1504 0 D 77 4602 * 2326 2357 4364 3746 * * 2612 * * * 2455 * * * 3395 * * * 77 0 * * * * * * 3734 0 0 A 78 5215 * 1899 4364 * 1434 * * * * * 2657 4916 5089 * 3938 * * * * 78 0 * * * * * * 3734 0 0 G 79 3746 * * 4439 * 499 * * * * * * * 4916 4294 4467 * 4563 * * 79 104 3847 * 504 1761 * * 3734 1467 0 W 80 * * * * * * * * * * * * * * * * * * 0 * 80 67 4467 * 0 * * * 3734 1000 0 G 81 * * 2889 3582 * 1372 3627 * 2827 4340 * 3746 * * * * * 4341 * * 81 75 4294 * 0 * * * 3734 1000 0 N 82 * * 1943 4364 * 3627 3403 * 4439 * * 1724 * * * 3141 4217 * * * 82 0 * * * * * * 3734 0 0 L 83 * * * 3938 * * 3757 * 2365 3356 4294 3557 * * 2492 * 3492 2907 * 4916 83 0 * * * * * * 3734 0 0 V 84 * * * 3746 4467 * * 3802 * 3720 3209 * 2942 * 3346 * 2982 2183 * 4341 84 0 * * * * * * 3734 0 0 Y 85 * * * * 1854 * 4341 3573 * * * * * * * * * * * 761 85 0 * * * * * * 3734 0 0 V 86 * 2407 * * 2216 * * 3604 * 4440 4245 * * * * * 4020 1718 * 4328 86 0 * * * * * * 3608 0 0 V 87 2652 2488 * * * * * 3367 * * * * * * * * 3152 1141 * * 87 0 * * * * * * 3597 0 0 N 88 * * * * * * 2553 2028 * * * 2970 * * * * 3973 1347 * * 88 0 * * * * * * 3346 0 0 Y 89 * * * * 827 * * * * * * * * * * * * * * 1196 89 0 * * 0 * * * 2708 0 0 //