HHsearch 1.5 NAME c2n01B_ FAM FILE c2n01B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2n01B_.a3m DATE Sat Sep 12 08:17:11 2015 LENG 106 match states, 106 columns in multiple alignment FILT 102 out of 165 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.8 EVD 0.4284 -0.4135 SEQ >ss_dssp CCSSCCCCSCCCCEECCEEEEESCCCTTTSCSEEEEETTEEEEECCGGGCCTTCCCEEEEESSTTSCCBCCEEEEETTEEEEESCCSEEEEEETTEEEEE EECCCC >sa_dssp EEEEEEEEEDEEEDBEDCDEECEBEDEDACBEEBCABDEDACABACAEEBEEEECBDBCACEEDECEDCECECDDEEDCBCACCDCDCABADAEEDDACB EDCEEE >ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCEEEEECCCCEEEEEECCEEEEE EECCCC >ss_conf 9755601048331012149983588766342689968907999918875466667569998078882542003767899998223645899828839999 953779 >Consensus xxxxxxxxxxxxxxNxxYxxxgxxxxxxixPxxvfDDGxxTyixfxxxxxxxxxxPaifxvxxdxgxxxlvnxxxxgxxxVVxxvxxxxxLRxGxxvvxI xrxxxr >c2n01B_ GSHMNAKILKDRRYYYDYDYATRTKKSWLIPSRVYDDGKFTYINMDLTRFPTGNFPAVFAREKEHAEDFLVNTTVEGNTLIVHGTYPFLVVRHGDNVVGL RRNKQK >UniRef50_A3W6C9(146-223:243) Conjugal transfer protein, trbG n=1 Tax=Roseovarius sp. 217 RepID=A3W6C9_9RHOB E=8e-07 s/c=0.70 id=25% cov=75% ---------------TGYQFAGSGA---IRPVRVWNDGRSTFFE-----FRPGVRPSIFGLNA-QGYEITQNSQTQGAVVRVTGVRDAYTIRMGDDHICI IR---- >UniRef50_B2AK67(201-298:303) Type IV secretion system, conjugation protein n=9 Tax=Burkholderiaceae RepID=B2AK67_CUPTR E=3e-17 s/c=0.91 id=22% cov=83% ------------QLNFEYAISGSASFK---PETAFDDGKALWLRLPAAALQSWPV----ALVKDGSDFVVVNQIRRGGYLVVQRLADTVVLRSGDDEVRI ERGRRR >UniRef50_A5TXL5(161-262:278) Possible conjugal transfer protein TrbG n=3 Tax=Fusobacterium RepID=A5TXL5_FUSNP E=3e-15 s/c=0.81 id=19% cov=95% -RSLKAQETKVNVNNLNFEYTWNKNKETWSPVQIFDDGEQTFIVM-GEKVKATELPILFIKDEQTGEGASVRHRYDPEtrYYTVDRLFKQAYLRYGEKEI IIKR---- >UniRef50_Q3YT83(178-274:274) Conjugal transfer protein TrbG/VirB9/CagX n=5 Tax=canis group RepID=Q3YT83_EHRCJ E=5e-12 s/c=0.75 id=21% cov=90% -------VIKPNITSDNYLVNTKLEDQKKLPVELFDDGKLTYFKFANNN---QIIPQVF-IYNNLGEKVPCKMLLLNNYVIIKGVHKNLYLEYKNESVKI TNKKL- >UniRef50_D1AV82(146-231:231) Conjugal transfer protein TrbG/VirB9/CagX n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AV82_STRM9 E=3e-07 s/c=0.66 id=23% cov=71% ------------------------KNNKLAPEQVFTDKEKTILILND---KLQEAPVVY-VYGEDNVLNLVNYRMIGNKIIIDKVVNKFQLVLGNEKLDI TR---- >UniRef50_C4K3N0(148-240:266) VirB9 conjugative transfer protein n=2 Tax=Enterobacteriaceae RepID=C4K3N0_HAMD5 E=9e-16 s/c=0.91 id=23% cov=89% GSQLNKNPC-DGRINRHYQKRG---DMPLSPDEMWDNGTFTCLRFPTN----APRPVIYQVLPD-GTETLANVRSVNDIMVVHGVSQRFRLRLNRLVLEL RT---- >UniRef50_Q2KY57(26-112:264) Type IV pilus assembly protein n=4 Tax=Bordetella RepID=Q2KY57_BORA1 E=6e-11 s/c=0.79 id=19% cov=83% --------VAASQFDFDWQLSG---DPDVAPLQVFSSPHEIWLQF----APGQRVPAIFASTVSG--EQPLAIQQRDPYIIAPGVWPALTLRGAHRVAHV RRSK-- >UniRef50_A9M4T0(184-275:280) Putative uncharacterized protein n=1 Tax=Vibrio sp. 23023 RepID=A9M4T0_9VIBR E=1e-07 s/c=0.63 id=22% cov=83% --------------YTRYKYdEGKAFVGNNTISDVYDDGRFTYIRLANPNRG-----VLSVETMIGGKNAIAPVKYDDAYgmYRITGIYPKFTLRVDDVK IIVTRSDNR >UniRef50_A4U5V0(263-336:342) ComB2 protein n=3 Tax=Proteobacteria RepID=A4U5V0_9PROT E=7e-10 s/c=0.88 id=25% cov=71% ------------------------GDDSLKPETVWRDDFFTYIRY-GAKWDGMELASGYVTLD--SIDELVNTHVEGTVFVIESTAPLITLKNGKRFLCI Q----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2330 0 0 S 2 * * * * * * * * 2598 * * * * * 2053 752 * * * * 2 0 * * * * * * 2886 0 0 H 3 * * * * * * 2358 * 1722 * * 2838 * 2723 * 2249 * * * * 3 0 * * * * * * 3117 0 0 M 4 * * * * * * * * * 1017 1903 * * * * * 2899 3260 * * 4 0 * * * * * * 3538 0 0 N 5 3718 * * * * 4431 * * 2517 * * 1410 * * 2474 2771 * * * * 5 0 * * * * * * 3992 0 0 A 6 1727 * * * * * 3865 * 3807 * * * 2403 4019 * 1703 * * * * 6 0 * * * * * * 4098 0 0 K 7 2782 * 2589 4095 * * * * 1687 * * 3377 4884 3625 * 4261 4161 * * * 7 0 * * * * * * 4529 0 0 I 8 3126 * * 3685 * 4169 * 2496 * 2850 * * 3319 * 4950 * 3263 2326 * * 8 0 * * * * * * 4655 0 0 L 9 1935 4665 * * * * * 3018 4765 2656 * * * * * 4813 3349 2020 * * 9 58 * 4665 * * * * 5012 0 0 K 10 4037 * 3967 * * 4876 4801 * 1779 * * 3426 3552 3645 2466 * 3742 * * * 10 0 * * * * 0 * 5029 0 1000 D 11 2104 * 2629 4571 * * * * 3417 * * * 1916 4950 * 4707 5019 3269 * * 11 0 * * * * * * 5141 0 0 R 12 5412 * 5121 4161 * 2835 * * 4237 * * 2155 * * 2484 2018 5578 * * 5181 12 35 * 5365 * * * * 5380 0 0 R 13 3973 * 4098 4300 5317 5267 5238 4765 4445 * * 5492 4286 1772 3055 5368 3375 4641 * 5670 13 0 * * * * 0 * 5500 0 1000 Y 14 5017 * * * 3845 5342 * 3159 4461 2145 5826 3795 * * 4112 5267 3891 4414 * 2296 14 42 5135 * 0 * * * 5503 1000 0 Y 15 * * 4061 * 6494 * * * 4770 * * 479 6235 * 6288 4647 * * * 3196 15 0 * * * * * * 5986 0 0 Y 16 * * 5585 * 1880 5879 5889 * 6614 3931 6054 5277 * * 4726 3952 2913 * 2524 2756 16 0 * * * * * * 6092 0 0 D 17 4636 * 2073 6107 * 3600 4581 * 5659 * 6688 1742 * 4949 3073 3808 5777 * * 6156 17 0 * * * * * * 6209 0 0 Y 18 * 6172 * * 3441 * * * * 6423 * * * * * * * * 4655 247 18 33 * 5453 * * * * 6226 0 0 D 19 4511 * 3768 3978 4218 3483 5658 * 4095 3656 5441 6187 * 3459 4658 3308 2834 4649 4934 4739 19 14 * 6674 * * * 0 6234 0 1617 Y 20 4260 * * * 3254 * * 3405 3603 3787 3209 * * 4487 * * 4059 2942 4254 2332 20 73 5338 5363 0 * * 0 6237 1000 1873 A 21 3402 6097 5004 3995 * * 6127 5182 3299 * * 4968 * 3226 2564 1917 3886 * * 6265 21 35 * 5384 * * 1588 584 6218 0 2401 T 22 3823 6156 6064 5998 * 999 6693 4614 * 4827 * 6500 4236 * * 5993 4407 2692 5890 * 22 210 * 2881 * * 1454 655 6188 0 2768 R 23 3437 * 3748 3421 * 3780 6003 * 2512 6073 * 3251 * 4938 3890 2309 4678 6033 * * 23 41 * 5155 * * 2505 280 6032 0 4041 T 24 2090 * 5162 3389 * 2871 * * 2700 5703 * 5098 5112 5563 4808 2968 3614 7045 * * 24 83 * 4167 * * 2349 315 6046 0 3962 K 25 3144 * 4187 3120 5266 1679 5073 * 2807 * * 4015 * 4986 4124 5009 5359 * * * 25 290 6002 2587 1000 1000 601 1554 6093 1000 4295 K 26 2648 * 2101 5424 3969 4272 6056 6259 3889 * 5774 3286 * * * 2317 * 5163 * 5408 26 67 6191 4982 1000 1000 2743 233 6171 1000 4155 S 27 3997 * 4190 3246 5128 5113 6379 6784 2643 6494 6504 5083 2989 3663 2956 4889 4217 4505 * 5535 27 166 4750 3800 0 * 2127 375 6199 1950 4028 W 28 4734 * 2166 4664 5777 4458 5591 * 3827 4298 5050 3856 4371 6394 4229 2435 5188 * 3850 * 28 66 * 4487 * * 695 1387 6168 0 4070 L 29 * * 6455 * 3195 * * 1605 5734 1798 5987 5294 * * * * * 3595 3057 * 29 18 * 6300 * * 1224 806 6202 0 3492 I 30 2353 * * 6327 5067 * * 4166 2753 3636 4644 * * 5423 2660 3763 3093 3938 * * 30 11 * 7029 * * 861 1154 6196 0 3023 P 31 * * * * * * * 5516 * * * * 64 * * 5530 * * * * 31 0 * * * * 379 2115 6065 0 2372 S 32 4118 * 4091 3393 5189 * * 4235 4423 2604 6734 6668 * 5021 6407 3670 2675 2512 * 5341 32 0 * * * * 0 * 6107 0 1000 R 33 3744 * 4395 3124 3837 7091 4890 * 5208 6942 5808 5623 * 2117 2137 3947 5060 * 6434 6109 33 0 * * * * * * 6154 0 0 V 34 2250 * * * * 6329 * 2947 * 4145 4241 * * * * * 6066 934 * * 34 0 * * * * * * 6099 0 0 Y 35 6707 * * * 1168 * 6512 6412 * * 5520 * * 6423 6864 5631 * * 2581 1770 35 0 * * * * * * 6099 0 0 D 36 6441 * 442 * * * * * * * * 2992 * * 5120 3804 5253 * * * 36 0 * * * * * * 6063 0 0 D 37 * * 380 * * 6363 * * * * * 2326 * * * 5659 * * * * 37 0 * * * * * * 6063 0 0 G 38 * * 4444 6968 * 243 * * 4705 6031 * 7215 5659 * * 6563 * * * 6574 38 0 * * * * * * 6063 0 0 K 39 5256 6546 * 3811 5727 5188 5075 5609 2904 5233 6311 6205 * 3337 1993 6713 2871 3620 * 5000 39 0 * * * * * * 6063 0 0 F 40 4827 * * 5659 1506 * 4244 6509 2669 3718 5970 * * 3910 3244 4056 6660 * * 4718 40 0 * * * * * * 6063 0 0 T 41 6039 * * * * * * 4551 * 5501 5645 * * * * * 182 5765 * * 41 0 * * * * * * 6063 0 0 Y 42 * 4274 * * 2243 * 6524 4844 * * 6391 * * * 5017 * 5587 6127 3871 875 42 0 * * * * * * 6063 0 0 I 43 * * * * 1831 * * 1586 * 1864 4773 * * * * * * 3907 * 6962 43 0 * * * * * * 6063 0 0 N 44 * * 5208 3478 5738 3710 * 5315 2970 5112 6170 5020 * 1916 2698 * 4217 3666 * 6635 44 18 * 6303 * * * * 6063 0 0 M 45 * * * * 904 * * 5113 * 2872 2400 * * * * * * * 4679 3803 45 158 * 3267 * * * 0 6039 0 1000 D 46 4060 * 2953 5162 * 4325 6385 * 4127 6545 * 4943 1222 6989 4210 3230 5415 * * * 46 75 * 4303 * * 1498 630 5883 0 3738 L 47 2868 * 3522 3619 * 2991 4922 5155 3817 5984 * 3394 3008 4318 4081 5423 3857 * * * 47 201 * 2940 * * 2511 278 5965 0 3772 T 48 3276 * 2804 5209 * 2273 * 7482 * * * 1920 4131 6382 * 3376 3567 * * * 48 715 * 1355 * * 1927 440 5923 0 4672 R 49 5404 * 5286 3581 * * * 4678 1807 4423 5628 2681 * 4152 2826 4796 5223 4072 * * 49 655 * 1454 * * 1548 604 5764 0 5317 F 50 1362 * 5142 * 3858 * * 3934 * 3564 3514 * * * 4741 5677 3355 3760 4390 * 50 302 * 2402 * * 3632 121 5495 0 5581 P 51 3965 * 4950 5446 * 4182 * * 2945 5820 * 3750 2548 3240 2776 3253 5444 5827 * 4823 51 225 * 2792 * * 2129 375 5374 0 5689 T 52 4084 * 5764 * * 3520 5426 4361 5143 2863 5709 4671 5199 3635 3224 2906 2824 5094 * 5589 52 67 * 4471 * * 1195 828 5402 0 5691 G 53 2483 * 6691 6142 * 2160 * * 5927 * 5404 5018 * 2344 * 2996 3370 4355 4851 * 53 0 * * * * 896 1112 5733 0 5169 N 54 * * 1923 1610 * 6048 5141 5987 3590 * * 5958 2975 5782 3976 5256 * 6025 * * 54 17 6441 * 0 * 313 2359 5883 1000 4318 F 55 3265 * * * 3331 * * 2310 6633 1999 3108 * * 6766 3819 * * 3066 6362 7138 55 36 * 5325 * * 623 1512 6004 0 2059 P 56 5660 * * * * 6459 * * * * * * 77 * * 5586 * * * * 56 34 * 5411 * * 585 1585 5972 0 2309 A 57 1290 * * * * 5596 * 4587 6394 6497 * * 5214 4421 6005 2845 3917 2244 * * 57 10 * 7146 * * 579 1597 6028 0 2162 V 58 4986 * * * 4611 5679 * 1498 * 2335 6486 * 6468 * * * * 1585 * * 58 15 * 6600 * * 1000 1000 6053 0 1567 F 59 * * * * 897 * * 5079 * 3233 6662 * * * * 5619 6642 7216 * 1837 59 169 * 3176 * * 1000 1000 6039 0 1583 A 60 2182 * * 4295 * 5093 * 3970 3484 4136 6411 4594 * 4795 3399 5896 5500 2107 6238 5566 60 104 * 3844 * * 102 3873 6020 0 4026 R 61 5406 7402 6393 3897 6557 5953 * 3323 4667 3946 5965 * * * 4911 4570 5691 893 * 6452 61 88 5965 4544 0 * 979 1021 6016 1000 2886 E 62 4473 * 3572 6065 * 3399 * 3875 4902 2801 6269 3290 * 4070 4307 4008 3134 3640 * 4859 62 56 * 4708 * * 195 2983 6025 0 3341 K 63 3279 * 2092 4690 * 3881 * * 3787 5477 5600 3074 2237 6478 * 4235 5910 5132 * * 63 253 * 2638 * * 2303 327 6034 0 2552 E 64 3982 * 1132 2454 * 4198 6707 5410 4195 * * 4574 * 5346 5063 4724 6368 6709 * * 64 337 * 2264 * * 1308 747 5880 0 4514 H 65 * * 3132 4611 * 1376 5118 * 4622 5759 * 3729 * 3190 5632 3137 4240 * * * 65 146 * 3381 * * 54 4764 5929 0 4784 A 66 5215 * 6251 4329 * 946 * * 3438 6176 * 3774 * 5704 4329 3649 4404 6654 * 7365 66 32 * 5532 * * 719 1349 5983 0 3170 E 67 * * 4626 2084 * * 6141 4452 2466 * 6374 4967 6402 2970 3681 4594 3165 5869 * 4287 67 48 * 4935 * * 399 2050 5981 0 2709 D 68 3579 * 3318 1496 6352 5712 * * 3811 3850 5518 4306 * 6511 4521 4508 3288 6905 * 6935 68 39 * 5244 * * 903 1104 6082 0 2300 F 69 2751 * * 3188 6018 5365 5320 5247 6546 3442 6490 4295 * 3481 4211 2932 3351 3558 6588 5803 69 11 * 7079 * * 302 2406 6080 0 2565 L 70 4704 * * * * 6241 * 3219 * 1050 4399 5286 2856 6535 6687 6337 4458 3869 * * 70 16 * 6529 * * 0 * 6057 0 1474 V 71 3536 4716 * 6589 5281 6524 * 4125 * 2872 * 5727 4752 6277 5995 * 4260 1005 * * 71 0 * * * * 0 * 6051 0 1000 N 72 5656 * 5277 4050 * 5330 * 5054 4732 * 5256 719 4059 6560 4358 5283 6093 6942 * * 72 0 * * * * * * 6056 0 0 T 73 4777 * 6514 * 4013 5433 6364 5221 6652 7557 5288 * 4891 4583 6377 2956 2396 3242 4310 2151 73 26 * 5799 * * * * 6056 0 0 T 74 5287 * 5330 6454 * 6830 2789 4696 4197 4719 6580 5056 * 4425 1346 4659 3410 5580 * 5753 74 0 * * * * 0 * 6056 0 1458 V 75 7163 * * * 5074 * * 2897 4297 3275 3769 5426 5435 3744 3424 6993 4188 1977 * 3824 75 100 3903 * 1254 784 * * 6056 2843 0 E 76 * * 2555 2508 6377 5102 5661 4985 2963 4703 * 4116 * 3540 2867 5287 * 3496 * * 76 74 4844 6022 1425 672 * * 6056 2097 0 G 77 4240 * 3649 4957 * 989 5475 * 4117 * * 3220 3814 5655 5155 6622 * * * 6091 77 33 6508 6416 1585 585 0 * 6017 1000 1000 N 78 4866 * 2180 5576 * 3352 * * 5028 5677 * 1699 3253 4081 4477 5730 4638 * * * 78 69 4418 * 1468 647 0 * 6051 2673 1000 T 79 6619 * * 6484 4851 5987 * 4372 5612 4873 4907 6565 * 4686 4746 * 2520 2982 6287 1352 79 119 3657 * 1543 606 * * 6056 2867 0 L 80 * * * * 2944 * * 2107 * 2294 3603 * * * * * 6036 2201 * 3071 80 0 * * * * * * 6056 0 0 I 81 6498 * * 6549 * * * 1717 5615 5383 5273 * * * 3942 * 4537 1013 * * 81 13 6829 * 0 * * * 6056 1000 0 V 82 3960 * * * * 6073 * 1702 * 4115 * * * * * * * 883 * 6201 82 0 * * * * * * 6056 0 0 H 83 * * 1791 2633 * * 2192 * 5276 6772 * 5277 3676 3853 * 4906 4453 5051 * 6201 83 0 * * * * * * 6056 0 0 G 84 5086 * 3974 3997 * 1792 * * 3715 6596 * 5547 5051 3563 2385 3755 4547 * * 5346 84 0 * * * * * * 6056 0 0 T 85 6030 * * * * * * 3347 6431 2418 5550 6637 * 6104 6501 * 2643 1087 * * 85 0 * * * * * * 6056 0 0 Y 86 2076 * 6073 6466 2722 5715 3989 5074 * 5002 * 3824 3832 * 6294 2736 5586 4590 5656 4153 86 0 * * * * * * 6056 0 0 P 87 4004 * 2807 4012 * 4188 5736 * 2529 * * 3710 2283 4672 3153 4485 7025 * * * 87 0 * * * * * * 6056 0 0 F 88 3492 * 6036 3045 5402 6536 4549 * 2093 3782 * 4475 * 3199 2617 6132 5526 5287 * 6381 88 0 * * * * * * 6056 0 0 L 89 2816 * * * 1746 5124 * 3508 * 2028 6892 * * * * * 6590 5517 2997 4951 89 0 * * * * * * 6061 0 0 V 90 5229 * * 3978 5499 * 5260 3533 5548 4206 5729 5086 * 6519 3615 6426 2172 1866 * 4287 90 0 * * * * * * 6061 0 0 V 91 5329 * * * 4369 * * 3135 * 419 4304 * * * * * * 6103 * * 91 18 * 6340 * * * * 6061 0 0 R 92 * * 6414 6020 * * * 4676 3164 5371 * * * 3940 576 * 5542 4617 * * 92 0 * * * * * 0 6088 0 1000 H 93 5280 * 5800 * 5030 5561 5451 3663 5069 1568 4884 5362 * 6755 3886 3001 6780 4027 * 3248 93 0 * * * * * 0 6081 0 1000 G 94 4964 * 4916 5439 * 233 * * 4656 * * 5567 * * * * * * * * 94 84 4144 * 1856 466 * 0 6081 2116 1000 D 95 6722 * 1858 3516 * 4806 4917 * 2582 * * 2419 * 3165 5421 4299 5741 * * * 95 0 * * * * * 0 6167 0 1000 N 96 3652 * 3672 2470 * 5332 * * 3351 3418 * 4502 * 3382 3443 3009 4219 4830 * * 96 0 * * * * 0 * 6075 0 1000 V 97 4636 * * 3223 4871 * 5376 5343 3731 6317 * * * * 5420 4524 4775 968 * 3894 97 0 * * * * * * 6031 0 0 V 98 3205 * * * * 5191 * 3003 * 2386 6132 * 6193 * * * 4902 1039 * * 98 0 * * * * * * 6036 0 0 G 99 4799 1808 4399 3119 * 2306 5310 4387 4892 * * * * 5344 4113 4354 5789 4446 * 6405 99 0 * * * * * * 6022 0 0 L 100 6144 * * * * * * 876 * 3904 * * * * * * * 1419 * * 100 0 * * * * * * 6022 0 0 R 101 * * 5627 2172 * 4693 * 3725 3385 4960 * * * 3524 2078 5629 3004 4413 * * 101 0 * * * * * * 5852 0 0 R 102 * * * * * * * * 3875 * * 2094 5099 4968 823 * 3812 * * * 102 0 * * * * * * 5596 0 0 N 103 * * 4729 * * 3648 * 4760 4326 3133 4660 1400 * 4783 * 3153 4403 3894 * * 103 0 * * * * * * 5230 0 0 K 104 3228 * 2222 3416 * * 3395 * 1349 * * 4526 * * 4204 * * * * * 104 0 * * * * * * 4969 0 0 Q 105 4125 * * * 4190 * * * 3041 2050 * 3562 * 1686 2949 * * * * * 105 0 * * * * * * 4706 0 0 K 106 * * * * * * * * 1510 * * * * * 624 * * * * * 106 0 * * 0 * * * 3663 0 0 //