HHsearch 1.5 NAME c2mweA_ FAM FILE c2mweA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mweA_.a3m DATE Sat Dec 6 08:16:09 2014 LENG 28 match states, 28 columns in multiple alignment FILT 107 out of 293 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4606 2.2086 SEQ >ss_dssp CCSEEEEETTTEEEEEETTTTEEECSCC >sa_dssp EDDEDDEDEEEDDBCDCEEEDDCDEEEE >ss_pred CCCEEEECCCCCEEEEECCCCEEEECCC >ss_conf 9758999898888897678870353078 >Consensus sxWxexxxxdGxxYYyNxxTxesxWexP >c2mweA_ SEWTERKTADGKTYYYNNRTAESTWEKP >UniRef50_A3LXR3(2-29:478) Pre-mRNA processing protein (Fragment) n=1 Tax=Pichia stipitis RepID=A3LXR3_PICST E=0.0002 s/c=1.68 id=41% cov=104% SEWEKVTDNEGRVYYYNSKTKETSWTLP >UniRef50_Q6CAH0(42-69:568) YALI0D02827p n=1 Tax=Yarrowia lipolytica RepID=Q6CAH0_YARLI E=0.0004 s/c=1.63 id=31% cov=104% TNWKEYTAEGGRKYWFNTESKESVWVFP >UniRef50_B3LAR8(338-366:497) RNA binding protein, putative n=5 Tax=Plasmodium RepID=B3LAR8_PLAKH E=1e-05 s/c=1.75 id=38% cov=104% SPWKQYFSkEDGRPYYHNEITGQTQWHKP >UniRef50_C1EIU3(82-109:727) Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EIU3_9CHLO E=6e-05 s/c=1.73 id=41% cov=104% TRWRENRAPDGRTYYYHQDTRETRWSLP >UniRef50_B6JWN1(7-34:370) DNA replication protein n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JWN1_SCHJY E=0.001 s/c=1.59 id=41% cov=104% SGWTEHKAPSGIPYYWNAELKKSTYKRP >UniRef50_A8IYF3(179-204:208) Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8IYF3_CHLRE E=0.0003 s/c=1.77 id=41% cov=96% --WQVHYTGEGRPYYYNAASGVTTWEPP >UniRef50_UPI000186DD95(418-445:1066) transcription elongation regulator, putative n=2 Tax=Neoptera RepID=UPI000186DD95 E=0.0004 s/c=1.63 id=41% cov=96% --WCVVWTGDGRVFFYNPSTRTSVWERP >UniRef50_B3RRG4(810-836:1004) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RRG4_TRIAD E=0.0003 s/c=1.71 id=36% cov=100% -DWRAAIDQQGRIYYYNIHTRVSQWQQP # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 3109 * * * * * * * * * * 4193 * * * 705 2210 * * * 1 0 * * * * * * 3955 0 0 E 2 4749 * 1431 2206 * 3601 5831 * 5326 4803 5802 4947 5911 4084 5674 4203 * 6093 * * 2 0 * * * * * * 4178 0 0 W 3 * * * * * * * * * * * * * * * * * * 0 * 3 0 * * * * * * 4271 0 0 T 4 4433 5811 5577 3275 * * 5226 4721 2196 6372 5288 5721 * 3236 3621 3353 3253 4185 * 5213 4 0 * * * * * * 4271 0 0 E 5 3277 * * 893 * * * 4805 5667 5634 * * 5233 3696 6433 4991 3983 3778 * * 5 0 * * * * * * 4271 0 0 R 6 2603 4048 * 7021 4385 6803 2158 * * 4324 5034 6619 * 6578 4541 5470 5244 3266 * 2400 6 0 * * * * * * 4271 0 0 K 7 5194 * 5216 5004 4935 * * 3558 2138 4965 5442 6102 * 5233 2800 * 2456 4268 4215 4568 7 0 * * * * * * 4271 0 0 T 8 2734 6128 2220 * * * * * 5429 * 6294 4513 * * * 2513 1530 5675 * * 8 22 6956 7156 0 * * * 4271 1000 0 A 9 3492 * 3137 2736 * 3987 * * 3872 * * 5081 1841 4182 4764 3427 5473 * * * 9 31 5550 * 0 * 0 * 4273 1687 1000 D 10 5729 * 1256 2527 * 4571 6639 * 4756 * * 2937 * 4264 5520 3939 5045 * * * 10 48 4921 * 535 1691 * * 4271 2003 0 G 11 * * * * * 62 * * * * * 5379 * * * 5809 * * * * 11 0 * * * * * * 4271 0 0 K 12 5907 * 6186 4596 4934 * 4254 6444 2364 5100 6767 4887 * 4458 1275 6788 4811 6483 * 4297 12 0 * * * * * * 4271 0 0 T 13 7075 6385 * 5223 6320 * 5615 3760 2606 4348 * 5675 2354 * 6208 5839 2392 2343 * * 13 0 * * * * * * 4271 0 0 Y 14 * * * * 3323 * * * * * * * * * * * * * * 152 14 0 * * * * * * 4271 0 0 Y 15 * * * * 3949 * * * * * * * * * * * * * 4199 183 15 0 * * * * * * 4271 0 0 Y 16 * * * * 2594 * 3828 * * 6483 6668 6552 * * * 6282 * 4774 3542 744 16 0 * * * * * * 4271 0 0 N 17 * * * * * * 3061 * * * * 216 * * * 5716 * * * * 17 0 * * * * * * 4271 0 0 N 18 3507 5535 6552 4200 5319 6988 4380 4515 3190 5024 6372 6967 4047 4633 4080 3099 2634 3462 * 6393 18 0 * * * * * * 4271 0 0 R 19 3801 * 4839 2584 * 6385 6689 3377 2904 4546 6877 4129 * 4327 3703 4427 4372 2875 * 6815 19 0 * * * * * * 4271 0 0 T 20 6281 * * 6343 * * * * 6181 4896 6180 6320 * * 6768 4298 250 * * * 20 0 * * * * * * 4271 0 0 A 21 6001 6128 * 4745 * 1573 * * 2210 * 5548 4817 * 3273 2291 5966 * * * * 21 0 * * * * * * 4271 0 0 E 22 4894 * * 1185 * * 6662 * 3465 6520 6181 * * 2955 4549 5188 4035 2822 * * 22 0 * * * * * * 4271 0 0 S 23 6432 * 6358 * * 5675 * * * * * 6186 * * 5133 824 1579 6100 * * 23 0 * * * * * * 4271 0 0 T 24 5527 5328 6466 * * * * 5836 4360 * * * * 1639 3942 3125 2246 2605 * * 24 0 * * * * * * 4271 0 0 W 25 * * * * * * * * * * * * * * * * 5746 * 109 4214 25 0 * * * * * * 4271 0 0 E 26 6409 * 2707 1057 * * 6956 5905 4348 5486 * * * 4116 6962 5906 2820 5421 * 6510 26 0 * * * * * * 4271 0 0 K 27 4906 6393 5530 * 5570 * 4088 4131 1276 4967 5456 * 3553 5882 2587 6852 6736 4906 * 6890 27 0 * * * * * * 4271 0 0 P 28 * * * * * * * * * * * * 0 * * * * * * * 28 0 * * 0 * * * 4271 0 0 //