HHsearch 1.5 NAME c2mvfA_ FAM FILE c2mvfA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mvfA_.a3m DATE Sat Dec 6 08:15:40 2014 LENG 94 match states, 94 columns in multiple alignment FILT 25 out of 29 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.4 EVD 0.4568 1.3452 SEQ >ss_dssp CCSCCCSSSCSCSEEEEEETTTTEEEEEECSEEECCSSCCCCSCCSSCCTTEEEEEEETTTCCCCSTTTTCEEEEEEEEEETTTTSEEEEEECC >sa_dssp EEEEDECDECEEDDACADADECEDDCDACBEBBDDBEEEDCEEEECEBCECADADADADEBEDEEBEDECDEDDDADACCDEEEDDCCAADBEE >ss_pred CCCEEEECCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCEEECCCEEECEEEEEECCCCEEECCCCCEECCCEEEEECCCCCCCCEEEEEEC >ss_conf 9611210341365666433555868987887777568875201205401011899840000000146640002046762288667615678969 >Consensus xexfirxmxlrxxxanVxxPxxxxtxkxxIlsVxxNpxnxxyxrxgiitKGtiievnvselgxvxxxgxxxxxxyAxVTnxPgqDGxiNaVLlx >c2mvfA_ YERFIRPMGLRYKKANVTHPTLNVTVQLPILSVKKNPSNPLYTQLGVLTKGTIIEVNVSDLGIVTASGKIAWGRYAQITNNPENDGCVNAVLLV >UniRef50_A7IAR0(53-124:125) 30S ribosomal protein S8e n=5 Tax=Archaea RepID=RS8E_METB6 E=6e-08 s/c=0.82 id=44% cov=78% ----IRSM--RAQFANVTNLANGETKKVKIENVEENGANPNYVRRNLLTKGAIIR---TEIG------------RARIMSRPGQDGIINAVLL- >UniRef50_A3DNX9(59-126:128) 30S ribosomal protein S8e n=5 Tax=Archaea RepID=RS8E_STAMF E=2e-10 s/c=0.99 id=41% cov=73% ----------RAVYVNVAVPNEGKVTKTRILEVVETPSNPQYARGNYITKGTIVR---TELGLV------------KITSRPGQDGVLNGILL- >UniRef50_C3MYT4(60-126:133) 30S ribosomal protein S8e n=9 Tax=Sulfolobus RepID=RS8E_SULIM E=2e-10 s/c=0.99 id=36% cov=71% ------------TTANVLDPATNTAKKVKILEVLETPANKELARRGIIIRGAKIR---TEAGL------------AVVTSRPGQDGVINAVLL- >UniRef50_O26309(60-125:127) 30S ribosomal protein S8e n=14 Tax=Euryarchaeota RepID=RS8E_METTH E=5e-10 s/c=0.99 id=28% cov=71% ------------TRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRGAVVETNLGNV---------------RVTSRPGQDGVINGVLI- >UniRef50_B1L724(64-119:125) Ribosomal protein S8 n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L724_KORCO E=0.0002 s/c=0.84 id=33% cov=61% ----------------------GVTKRAKILGFIENPSDKTLSRRGIITRGALVR---TELGVV------------RITSRAGQHGLLNGVLV- >UniRef50_Q3LWA5(70-150:152) Ribosomal protein S8 n=1 Tax=Bigelowiella natans RepID=Q3LWA5_BIGNA E=5e-13 s/c=0.93 id=34% cov=78% ---------------------MNVSIKAKIISIYSNDEKNNFSRENSIKKGTILIVFISNLANTLLTGNKTRMRYAMVTNDPAFDGCINSVLI- >UniRef50_A3MWY2(63-130:131) 30S ribosomal protein S8e n=6 Tax=Thermoproteaceae RepID=RS8E_PYRCJ E=2e-12 s/c=1.08 id=42% cov=69% --------------ANVYIPKERRHVKAKILSIVSSPSNPDYARRNYIVKGAIIQTEVG---------------KAVVTSRPGQDGVINAVLI- >UniRef50_D2EGR9(52-120:126) Ribosomal protein S8E n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGR9_9EURY E=8e-10 s/c=0.94 id=31% cov=74% ----IKITPLKTDQGNLFDPKNKKTSKVKIVRVLENKANRSYARRNIITKGALIETD---------------QGKAVVTNRPGQDGQV------ >UniRef50_A9A203(71-125:127) Ribosomal protein S8e n=3 Tax=Thaumarchaeota RepID=A9A203_NITMS E=3e-05 s/c=0.91 id=36% cov=53% -----------------------------ILKVLDNTTNNDYKRRGIITKGAILE---------------TQEGKCKVVSKPGQNGIVNAILV- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Y 1 * * * * 2826 * * * * * * * * * * * * * * 219 1 0 * * * * * * 1457 0 0 E 2 * * * 0 * * * * * * * * * * * * * * * * 2 0 * * * * * * 1457 0 0 R 3 * * * * * * * * 2375 * * * * * 309 * * * * * 3 0 * * * * * * 1457 0 0 F 4 * * * * 0 * * * * * * * * * * * * * * * 4 0 * * * * * * 1457 0 0 I 5 * * * * * * * 118 * * * * * * * * * 3674 * * 5 0 * * * * * * 2015 0 0 R 6 * * * * * * * * 2524 * * * * * 275 * * * * * 6 0 * * * * * * 2015 0 0 P 7 * * * * * * * 2524 * * * * 738 * * 2143 * * * * 7 0 * * * * * * 2015 0 0 M 8 * * * * * * * * * * 477 * * * * * 1829 * * * 8 231 * 2755 * * * * 2015 0 0 G 9 * * * * * 672 * * * * * * 2149 * * 2768 * * * * 9 0 * * * * * 0 1851 0 1000 L 10 * * * * * * * * * 206 * * * 2909 * * * * * * 10 0 * * * * 0 * 1966 0 1000 R 11 * * * * * * * * 2424 * * * * * 298 * * * * * 11 0 * * * * * * 2180 0 0 Y 12 1889 * * * 2195 * * 3249 * * * * * * * 3543 3314 * * 2183 12 0 * * * * * * 2180 0 0 K 13 4152 * 2756 * * * * * 1633 * * * * 3719 * * 1649 3672 * * 13 0 * * * * * * 2277 0 0 K 14 * * * * 3719 * * 4158 1545 * * * * 3628 3583 * 3961 2626 * 2892 14 0 * * * * * * 2277 0 0 A 15 424 * * * * 3920 * 3858 * * * * * * * * * 3062 * * 15 0 * * * * * * 2307 0 0 N 16 * * * * * * 2509 * * * * 279 * * * * * * * * 16 0 * * * * * * 2337 0 0 V 17 * * * * * * * * * 4008 * * * * * * * 93 * * 17 0 * * * * * * 2337 0 0 T 18 4053 * * * 3102 * * 4630 * 4331 * * * * * * 849 4001 * 3113 18 0 * * * * * * 2337 0 0 H 19 * * 1641 * * * 1383 3113 * * * 4045 * 4075 * * * 4053 * * 19 88 4075 * 4392 70 * * 2337 1000 0 P 20 * * * * * * * * * 4045 * * 176 4203 * * * * * * 20 0 * * * * * * 2337 0 0 T 21 3181 * * 1043 * * * * 2123 * * 4053 * * * * 4054 4203 * * 21 0 * * * * * * 2337 0 0 L 22 * * * 2684 * * * * * 1623 2500 2625 * * * * 2467 * * * 22 0 * * * * * * 2621 0 0 N 23 4386 * * * * 1521 * * 2125 * * 1608 * * 4425 * * * * * 23 0 * * * * * * 2679 0 0 V 24 3059 4193 4640 4350 * * * * 2115 * * * * * 4425 * 3767 1376 * * 24 0 * * * * * * 2679 0 0 T 25 3767 4544 * * * * 4425 * * * * * * * * 2912 712 3412 * * 25 0 * * * * * * 2679 0 0 V 26 * * * 4350 2826 * * 2912 2376 * * * * 4507 4894 4465 4477 2042 * 3761 26 59 * 4640 * * * * 2679 0 0 Q 27 * 4294 * * * * * 4366 787 * * 4097 * 2678 3236 * * * * * 27 0 * * * * * 0 2652 0 1000 L 28 1570 * * * * * * * * 1546 * * * * * * 4510 1853 * * 28 0 * * * * * 0 2652 0 1000 P 29 * * 4097 4366 * * * * 1165 4656 * * 1816 4402 3713 * * * * * 29 0 * * * * * 0 2652 0 1000 I 30 * * * * * * * 149 * * 4660 * * * * * * 4098 * * 30 0 * * * * * 0 2600 0 1000 L 31 * * * 3636 * * * 2027 * 900 * * * * 4799 * 3862 4887 * * 31 0 * * * * * 0 2600 0 1000 S 32 * * * 3869 * 3294 * * 3050 * * 3103 * * 3499 1106 4660 * * * 32 0 * * * * * 0 2600 0 1000 V 33 * * * * 4162 * * 2615 * * * * * * * * * 357 * * 33 0 * * * * * 0 2600 0 1000 K 34 * * * 4766 * * * 3555 1660 2638 * * * * * * 4660 2108 * 2948 34 0 * * * * * 0 2600 0 1000 K 35 * * 2604 1490 * * * * 1660 * * * * * * 2615 * * * * 35 0 * * * * * 0 2600 0 1000 N 36 * * * * * * * * * * * 197 * * * 4893 3412 * * * 36 0 * * * * * 0 2600 0 1000 P 37 * * 2948 * * 4766 * * 3988 * * * 563 * * * 3418 * * * 37 0 * * * * * 0 2600 0 1000 S 38 1557 * * 2948 * * * * * * * 4297 * 3353 * 2001 2922 * * * 38 0 * * * * * 0 2600 0 1000 N 39 * * 4162 * * 4297 * * 2948 * * 636 * * * 3055 * * * * 39 0 * * * * * 0 2600 0 1000 P 40 * * * * * * * * 2367 * * 2417 1489 2998 3412 * * 4516 * * 40 0 * * * * * 0 2600 0 1000 L 41 * * 3080 4905 * * 3535 * * 1912 4525 2070 * 3493 * 4943 4212 4663 * * 41 0 * * * * * 0 2632 0 1000 Y 42 * * * * 2411 * * * * 3517 3893 * * * * 4483 * * * 707 42 0 * * * * * 0 2632 0 1000 T 43 2431 * * * * * * 3827 4209 * * * * * * 2188 1712 2597 * * 43 0 * * * * * 0 2632 0 1000 Q 44 * * * * * * * * * * * * * 2605 619 3893 3095 * * * 44 0 * * * * * 0 2632 0 1000 L 45 5379 * * 3035 * 4992 * * * 1520 * * * * 1077 * * * * * 45 0 * * * * * 0 2632 0 1000 G 46 * * * * * 938 * * * * * 1064 * * * * * * * * 46 0 * * * * * 0 2632 0 1000 V 47 * * * * 4718 * * 1213 * 4815 * * * * * 3035 * 1693 * 3968 47 0 * * * * 0 * 2632 0 1000 L 48 * * * * 5029 * * 722 * 1576 * * * * * * * 5165 * * 48 0 * * * * * * 2630 0 0 T 49 * * * * * * * 4931 3066 * * * * * * 2501 700 4172 * * 49 0 * * * * * * 2630 0 0 K 50 * * * * * * * * 252 * * * * * 2640 * * * * * 50 0 * * * * * * 2630 0 0 G 51 * * * * * 0 * * * * * * * * * * * * * * 51 0 * * * * * * 2630 0 0 T 52 1228 * * * * * * * * * * * * * * * 803 * * * 52 0 * * * * * * 2630 0 0 I 53 * * * * 4751 * * 755 4931 3561 * * * * * * * 1984 * * 53 0 * * * * * * 2630 0 0 I 54 * * * * * * * 947 * 1895 * * * * * * 5029 2459 * * 54 55 * 4751 * * * * 2630 0 0 E 55 * * * 681 * * * 3040 * * * * * 3393 2649 * * * * * 55 512 * 1742 * * * 0 2611 0 1000 V 56 * * * * * * * 3628 * * * * * * * * 1600 763 * * 56 0 * * * * * 0 2346 0 1834 N 57 * * 4231 3377 2726 * * * * * * 786 * * * 3066 * * * * 57 79 * 4231 * * 3063 184 2346 0 1834 V 58 3924 * * * * * * 2351 * 4085 * * * * * * 4214 677 * * 58 0 * * * * 527 1709 2275 0 1828 S 59 * * * * * 2404 * * * * * * * * * 948 1773 * * * 59 158 * 3265 * * * 0 2548 0 1331 D 60 * * 4568 490 * * * * * * * 2414 * 4100 * * * * * * 60 87 * 4100 * * * 0 2513 0 1629 L 61 4586 * * * * * * 3665 * 334 4912 * * * * * * 4241 * * 61 78 * 4241 * * * 0 2328 0 1667 G 62 2680 * * * * 245 * * * * * * * * * * * * * * 62 324 * 2314 * * * 0 2292 0 1735 I 63 * * * * 4195 * * 1856 * 1351 * 2466 * * * * * 3378 * * 63 113 * 3726 * * * 0 2202 0 1920 V 64 * * * * * * * * * * 3758 * * * * * 2421 436 * * 64 476 * 1831 * * * 0 2161 0 1928 T 65 * * 2995 * * * * * * 2020 * * * * * * 671 * * * 65 0 * * * * 2212 351 1865 0 2134 A 66 2067 * * * * 3046 * * * 2099 * * 3550 2142 * * 3398 * * * 66 107 * 3803 * * * 0 1850 0 2007 S 67 2213 * * * * 1508 * * * * * * * * * 2411 2031 * * * 67 0 * * * * 2369 310 1877 0 2045 G 68 * * * * * 135 * * * * * 3489 * * * * * * * * 68 0 * * * * * 0 1850 0 2007 K 69 * * * * * * * * 632 * * 2099 * 3046 * * * * * * 69 0 * * * * * 0 1850 0 2007 I 70 * * * * * * * 2325 2099 * * * * * * * * 819 * * 70 0 * * * * 2966 198 1850 0 2007 A 71 2294 * * * * * * 2954 * * * * * * * * 1268 1990 * * 71 0 * * * * * 0 2079 0 1968 W 72 * * * * * * * * * * * * * 2735 2298 * * * 629 * 72 0 * * * * 3503 133 2079 0 1968 G 73 * * * 2450 * 899 * * * * 2400 * * 3453 * * * * * * 73 0 * * * * * 0 2178 0 2003 R 74 * * * * * 2297 * * 1090 * * * * * 1613 * * * * * 74 0 * * * * 819 1207 2178 0 2003 Y 75 * * * * * * * * 1485 * * * * * 3490 * * * * 853 75 0 * * * * 1326 735 2490 0 1757 A 76 152 4056 * * * * * * * * * * * * * * * 4658 * * 76 0 * * * * 0 * 2547 0 1601 Q 77 * * * * * * * 5196 2818 5165 3066 * 4752 1619 2318 * * 3054 * * 77 0 * * * * * * 2630 0 0 I 78 * * * * * * * 1786 * * * * * * * * * 494 * * 78 0 * * * * * * 2630 0 0 T 79 * * * * * * * * * * 4838 * * * * 4497 204 4243 * * 79 0 * * * * * * 2630 0 0 N 80 * * * * * * * * * * * 859 * * * 1156 * * * * 80 0 * * * * * * 2630 0 0 N 81 * * 3066 * * * * * 4243 * * 1801 * * 1104 4540 4941 * * * 81 0 * * * * * * 2630 0 0 P 82 4249 * * * * * * * * * * * 78 * * * * * * * 82 0 * * * * * * 2630 0 0 E 83 3066 * 4497 1652 * 949 * * * * * * * * * * * * * * 83 0 * * * * * * 2630 0 0 N 84 * * * * 3066 * * * * 4497 * 1984 * 949 3934 * * * * * 84 0 * * * * * * 2630 0 0 D 85 * * 277 * * * 3646 * * * * 4243 * * * * 4566 * * * 85 0 * * * * * * 2630 0 0 G 86 4752 * * * * 55 * * * * * * * * * * * * * * 86 0 * * * * * * 2630 0 0 C 87 * 1074 * * * * * 3510 * 4249 * * * 3750 * * 4497 1910 * * 87 0 * * * * * * 2630 0 0 V 88 * * * * * * * 1139 * 3587 * * * * * * * 1112 * * 88 0 * * * * * * 2630 0 0 N 89 * * * * * * * * * * * 66 * * * 4476 * * * * 89 0 * * * * * * 2613 0 0 A 90 465 * * * * 2704 * * * * * * * * * 3035 * * * * 90 0 * * * * * * 2613 0 0 V 91 * * * * * * * 3439 * * 3880 * * * * * * 252 * * 91 0 * * * * * * 2607 0 0 L 92 * * * * * * * * * 0 * * * * * * * * * * 92 0 * * * * * * 2607 0 0 L 93 * * * * * * * 2007 * 829 * * * * * * * 2410 * * 93 0 * * * * * * 2607 0 0 V 94 * * * * * * * * * 2496 * * * * * * * 281 * * 94 0 * * 0 * * * 1442 0 0 //