HHsearch 1.5 NAME c2mukX_ FAM FILE c2mukX_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mukX_.a3m DATE Sat Dec 20 08:19:24 2014 LENG 113 match states, 113 columns in multiple alignment FILT 109 out of 193 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.9 EVD 0.4572 2.0225 SEQ >ss_dssp CCCTTCCCEEEEESSSCCCEEECGGGCSSHHHHHHHHHHHHHHHTCSSSSCTTTTTTTHHHHHHHHHHHTTTCCCEEECTTCCEEETTSSCHHHHHHHCC EEEECCGGGGTTC >sa_dssp EDCEEEBEADACBDDBEBEDEBCADDCECEDDBDEBBEECBDDDCEEEEECEECCDEDBDCDCEDACEECEEDCCAACBEECCDCEEEDCECEEBCDBBD CADCCABACEDAE >ss_pred CCCCCCCEEEEEECCHHHEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCHHHHHHHCE EEEEECHHHCCCC >ss_conf 9878872799995140301124423117989999999984022356555653333333332111146788777999973889888974778898996310 7788402420489 >Consensus ggxxxxxxVKVxMdGxxigRkVDLxxxxsYxxLxxxLxxMFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxexxlxYeDxEGDxmLVGDvPWxxFvxsvk RLrIlxxseaxgl >c2mukX_ GGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYENKDGNWMLVGDVPWPMFVDTCK RLRLMKGSDAIGL >UniRef50_Q93WC4(160-240:251) Auxin-responsive protein IAA29 n=2 Tax=Arabidopsis thaliana RepID=IAA29_ARATH E=3e-20 s/c=1.23 id=33% cov=73% ------MYVKVKMDGVAIARKVDIKLFNSYESLTNSLITMFTEYEDCDREDTN-------------------YTFTFQGKEGDWLLRGDVTWKIFAESVH RISIIR------- >UniRef50_Q8S983(849-940:955) Auxin response factor 11 n=7 Tax=Magnoliophyta RepID=ARFK_ORYSJ E=2e-24 s/c=1.23 id=27% cov=79% --PPVRTYTKVQKQG-SVGRSIDVTGFRNYHELRSAIACMFGL------------------QGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVR CIRILSPSE---- >UniRef50_C5Y1N5(20-118:185) Putative uncharacterized protein Sb05g008510 n=1 Tax=Sorghum bicolor RepID=C5Y1N5_SORBI E=8e-22 s/c=1.05 id=28% cov=88% -GFSPSRFVKVFMQGEVVGRKINLATHQNYASLSFTLKRLGNNYSM-----PSCELNGLGNKEVDGPSDDNNFILFYDNVDGDRFFLGEVPWEIFVISVK RIYIV-------- >UniRef50_C5YUA0(120-226:242) Putative uncharacterized protein Sb09g005830 n=2 Tax=Andropogoneae RepID=C5YUA0_SORBI E=4e-33 s/c=1.33 id=37% cov=96% --GNKGLFVKVNMDGVPIGRKLDLGAHAGYDTLSAAVDHLFRGLLAAQASGSGGEQQPIAGILNGGGGGGREYTLVYEDDEGDQMLVGDVPWPMFIASAR RLRVLRSSD---- >UniRef50_B9SPB5(542-618:620) Auxin response factor, putative n=1 Tax=Ricinus communis RepID=B9SPB5_RICCO E=3e-17 s/c=1.16 id=28% cov=69% ----------VRMQGIALGRSIDLTKFKCHEDLIKELENMF-------------------EIEGELSGSTKKWLIVYTDADSEMKLVGDYQWEVVCNMVK KILIYR------- >UniRef50_A9TVV9(236-317:318) Predicted protein n=2 Tax=Moss Superclass V RepID=A9TVV9_PHYPA E=7e-16 s/c=1.04 id=31% cov=73% GSNEALQHCKVFREGDEVGRTLDLANFKSYEEVYDRLAGMFSVPAASFKNR-----------------------VVYQDGEGCTLPVGAEPYGNFVAAVR RLTIL-------- >UniRef50_B9N310(12-109:117) Predicted protein (Fragment) n=2 Tax=Spermatophyta RepID=B9N310_POPTR E=1e-18 s/c=0.96 id=28% cov=87% --------VTVVLEGRSICQRISLHKHASYHSLAKALRQMFVDGGSDSGGSTASSASESVSDHDLDLTNAvPGHLIAYEDIESDLLLAGDLNWKDFVRVA KRIRIL-------- >UniRef50_D1HDC5(196-246:335) Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HDC5_VITVI E=6e-06 s/c=1.02 id=31% cov=43% -----------------------------------ALEKMFSCFTTGQCSSHRFlGREGLTESHLMDIPHGSEYMLTYEDQNED---------------- -------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2465 0 0 G 2 * * * * * 387 * * * * * * * * * 2781 3481 * * * 2 0 * * * * * * 3771 0 0 P 3 * 3958 3712 * 4361 1591 * * 4763 3519 * 3920 1951 * * 5063 * * * * 3 55 4753 * 1000 1000 * * 4008 1000 0 E 4 4113 * 5285 3205 * 4979 * * 2078 5048 * 4512 4086 3621 5204 2022 5144 5392 * * 4 0 * * * * * * 4192 0 0 A 5 1880 * * 5729 * 3774 * * 2939 * * 5236 3015 4507 4454 2966 4355 3486 * * 5 0 * * * * * * 4292 0 0 A 6 2131 * * * * 2922 5315 4630 * 4369 * 4266 4695 * 3357 2041 4095 4795 * * 6 0 * * * * * * 4341 0 0 A 7 3103 4982 * * 5939 4372 * 5985 3669 3843 2543 4868 3759 4555 2656 4159 4171 * * 5011 7 48 4923 * 1113 895 * * 4531 1516 0 F 8 * 5417 * * 1106 * 4694 * * 3243 * * * * * * * * 6478 1487 8 0 * * * * * * 4607 0 0 V 9 5008 4833 * * * * * 3178 * 6375 * * * * * * 5939 331 * * 9 0 * * * * * * 4853 0 0 K 10 * * * * * * * * 118 * * * * 4964 * * 4420 * * * 10 0 * * * * * * 5170 0 0 V 11 * * * * * * * 3424 * * * * * * * * * 141 * * 11 0 * * * * * * 5187 0 0 S 12 4890 * * * 2738 * 3666 6885 3304 5222 * 2233 * 4448 5990 2699 5049 4462 * 3362 12 0 * * * * * * 5187 0 0 M 13 * * * * * * * 6396 2815 3594 638 * * * 4820 * * 3741 * 6568 13 0 * * * * * * 5252 0 0 D 14 * * 1135 1809 * * 4669 * * 6364 * * * 2837 6588 5190 * 6997 * 5493 14 0 * * * * * * 5252 0 0 G 15 6510 * * * * 119 * * * * * * * * * 3872 * * * * 15 43 * 5084 * * * * 5252 0 0 A 16 2510 5314 3686 3386 * * * 2822 6359 4258 6883 5553 * * 4201 4648 4982 2039 * 5574 16 55 * 4728 * * 0 * 5226 0 1527 P 17 1918 * 5572 4783 * 4901 * 5873 6220 6734 * * 1235 * * 3691 4360 4219 * * 17 7 * 7623 * * 0 * 5215 0 1667 Y 18 * * * * 4224 * * 1305 * 3844 * * * * * * * 1809 * 2422 18 0 * * * * 0 * 5211 0 1000 L 19 4175 4235 * 6025 * 598 * * * 2455 6436 * * * * 6611 6439 * * * 19 0 * * * * * * 5261 0 0 R 20 * * * * * * 5630 * * * * * * 4925 79 * * * * * 20 0 * * * * * * 5261 0 0 K 21 3466 * * * * * * * 666 * * 4395 * * 4235 3095 4193 * * 7216 21 0 * * * * * * 5261 0 0 I 22 * * * * * * * 1539 * 2414 * * * * * * * 1095 * * 22 0 * * * * * * 5261 0 0 D 23 * 4732 330 * * * 5630 * * * * 3135 * * * 4925 * * * * 23 0 * * * * * * 5261 0 0 L 24 * * * * * * * 4487 * 244 5010 * * * * * * 3645 * * 24 0 * * * * * * 5261 0 0 R 25 2869 7169 5851 6095 * 4342 4925 * 2698 4559 5773 4109 4988 5041 4456 2120 3075 6255 * * 25 0 * * * * * * 5261 0 0 M 26 1728 * 4732 * * 6495 * 4321 2966 3754 3128 4844 6481 * 3594 4198 4051 4669 * * 26 0 * * * * * * 5261 0 0 Y 27 * 5444 * * 2473 * 1798 6522 * 2545 6611 6438 * 6255 * 6436 * 6164 * 1907 27 0 * * * * * * 5261 0 0 K 28 3412 6554 2696 6002 * 3497 5254 * 2374 * * 2803 * 4819 3889 3207 4241 * * 6589 28 0 * * * * * * 5261 0 0 S 29 6255 3675 5456 * * 1832 * * * * * 2924 * * 7245 1125 6956 * * * 29 0 * * * * * * 5261 0 0 Y 30 * * * * 4112 * 6007 * * 6127 * * * * * * * * * 132 30 0 * * * * * * 5261 0 0 D 31 3476 * 2267 2196 * 3825 3957 4537 4561 6298 * 4886 5095 3646 4395 4908 5200 * * * 31 0 * * * * * * 5261 0 0 E 32 4938 * 3303 1605 * 4738 * * 3760 * 6943 5830 * 3651 4988 2550 3078 * * * 32 0 * * * * * * 5261 0 0 L 33 * * * * * * * * * 42 6511 * * * * * * 5796 * * 33 0 * * * * * * 5261 0 0 S 34 2670 4827 * 6690 6786 * * 2793 4572 3558 7040 * * * 3340 1995 4762 4494 * 3657 34 0 * * * * * * 5261 0 0 N 35 3109 5667 4264 4433 4361 5566 5049 6952 3533 3876 6161 3937 * 3435 3454 2428 4434 6888 * * 35 0 * * * * * * 5261 0 0 A 36 1604 4995 6749 2607 * 6514 * * 5172 * 5532 7169 * 4744 3174 5003 2408 4993 * * 36 0 * * * * * * 5259 0 0 L 37 * * * * * * * 6498 * 172 * * * * * * * 3305 * * 37 14 6646 * 0 * * * 5259 1131 0 S 38 2911 * 2658 1609 * 4315 5480 5018 4138 6344 6346 5364 * 4860 4239 3986 5558 * * * 38 0 * * * * * * 5259 0 0 N 39 4986 6498 2913 2872 6986 5035 4728 7042 2879 4925 * 3633 * 2979 2899 4006 4971 * * * 39 0 * * * * * * 5259 0 0 M 40 * * * * 5537 * * 4788 7265 2102 615 4995 * * 5757 * * * * * 40 14 6692 * 0 * * * 5259 1000 0 F 41 * * * * 129 4610 * * * * * * * * * * 6254 4995 * * 41 295 4861 2734 1223 807 * * 5259 1711 0 S 42 4904 4959 4629 6895 5741 2065 3918 6327 6542 5219 6973 3292 6248 3618 3091 3170 4949 4677 * 7119 42 170 6965 3275 0 * * 0 5277 1000 2611 S 43 5393 3025 4121 5740 * 2375 6338 3265 3861 3596 4747 3634 * 6055 5046 4151 4230 4509 * * 43 201 * 2941 * * * 0 5143 0 3607 F 44 * 3802 4365 4974 2092 4879 6161 5365 6597 2911 * 4986 3756 * * 3236 4153 * * 2943 44 16 * 6481 * * 2860 214 4879 0 3825 T 45 5339 * 6630 5427 5582 3980 4977 3080 6264 2369 * 3638 * 4339 5844 2638 2629 4982 * * 45 54 * 4769 * * * 0 4889 0 3675 M 46 2759 5460 5643 4593 * 3622 4931 2862 6288 3551 3470 4903 5427 4743 * 3355 3534 4320 * * 46 53 6699 5256 1000 1000 * 0 4983 1000 3845 G 47 2201 4348 3602 4338 6245 2102 5414 * * 5691 6460 5374 4457 5445 6530 3081 6126 6124 4818 6001 47 30 * 5598 * * 3165 171 4922 0 3951 K 48 3057 * 4016 4367 4378 3778 4725 * 4616 4055 6142 6356 3354 2181 6136 4622 4050 5900 * 4913 48 87 4800 5453 1543 606 3692 116 4945 1504 3697 H 49 4226 4468 3840 3757 3303 3894 4376 5609 3811 3654 * 5107 6136 3788 2419 5286 6230 6751 * 5736 49 95 4659 5362 2347 316 * 0 4952 1506 3795 G 50 4909 3945 2624 2968 * 2993 * * 4775 * * 3914 6135 * 4932 2252 4654 6281 4308 5423 50 56 6472 5214 0 * * 0 4817 1000 3864 G 51 3718 * 3730 4409 * 2829 4178 5259 5692 3581 * 4215 6610 4566 2976 2040 * * * * 51 204 6722 3029 0 * 2914 205 4806 1000 3944 E 52 3114 * 4315 2511 * 4196 3623 4775 * 5214 5059 * 3553 6208 4793 2621 2920 * * * 52 277 5422 2724 2141 371 * 0 4837 1294 4255 E 53 2951 6229 4924 5878 * 2588 5965 5560 4450 4484 4174 3150 * 3657 3771 2611 5931 6274 * * 53 185 5827 3284 0 * * 0 4379 1000 4527 G 54 3929 4516 4728 4584 4644 1356 * 5958 * 4079 * 3613 6127 * 4769 2723 * * * 5564 54 65 5237 5850 1476 642 * 0 4283 1559 4584 M 55 3641 6084 4540 2549 * 2942 * 4823 3807 4044 5587 6174 5561 4386 5344 2856 5543 3581 * 5495 55 135 4179 4863 2799 224 4764 54 4285 1728 4518 I 56 4155 6218 5058 3930 * 3755 5755 2746 3500 3395 6074 * * 4008 2880 3348 5079 4176 * 6186 56 143 5948 3680 1000 1000 4094 87 4277 1000 4533 D 57 4680 4238 2398 4142 5915 3058 6170 * 3891 4186 5735 3581 5353 3954 * 3488 3629 5193 * * 57 0 * * * * 2885 210 4288 0 4687 F 58 4300 5952 5470 3347 2672 2271 * 4524 3984 * 3496 * 5985 6131 4809 3092 3841 * * * 58 31 * 5566 * * 3306 154 4436 0 4476 M 59 5127 6164 2742 3423 * 4614 * 3788 3944 2912 3465 5899 * 2729 * 4989 3629 4914 * * 59 0 * * * * 2858 214 4580 0 4364 N 60 4547 * 3504 2752 4283 3367 * 5925 5539 6405 * 2234 5361 6389 5716 3147 3132 5168 * * 60 70 4398 * 2364 312 2370 310 4604 1796 4224 E 61 6497 * 2122 2087 * 5514 6685 4194 4287 4977 * 3518 5528 5248 * 3791 3566 3993 * * 61 76 * 4281 * * 2047 400 4831 0 4138 R 62 4539 4448 3633 3625 3992 3706 * 3654 2818 5179 * 3846 * 5225 4278 2402 6667 * * 6131 62 28 5696 * 1000 1000 2547 271 4908 1422 3976 K 63 5366 5174 3927 2721 5394 2476 4641 3822 2623 5671 * 4722 5036 4973 3932 4955 4778 * * * 63 16 * 6491 * * 2687 244 4875 0 3688 L 64 4607 * 4145 3868 5630 2536 * 5704 4312 1685 4352 6519 * 4206 5569 3714 * 4338 * * 64 23 * 5964 * * 3490 135 4879 0 3501 M 65 4947 * 4493 3232 * 3338 6345 4385 4006 2366 2729 * 6350 * 3607 4207 4158 4800 * 6606 65 15 6607 * 1585 585 3264 159 4881 1000 3524 D 66 5138 5559 1254 3677 * 4594 7337 * * 2067 6799 3755 * 5909 5716 5783 5594 6781 * * 66 74 6799 4618 1000 1000 3846 104 4867 1000 3461 L 67 4304 5037 4878 6738 4416 3768 4279 4025 5500 1453 4940 * 3763 5543 5370 4442 4798 5556 * * 67 42 * 5126 * * 3378 146 4865 0 3547 V 68 4295 5652 2334 4324 * 3614 7177 * 5209 3243 * 5648 3463 4923 4035 3520 3691 3986 * 5197 68 33 * 5469 * * 1712 525 4826 0 3511 N 69 6859 * 3636 6155 * 2062 5891 6090 3468 * 5999 2147 3298 5506 5013 3689 4546 6282 * 7291 69 13 6800 * 1000 1000 2736 235 4816 1000 3469 S 70 3949 * 3615 3557 * 2449 6342 * 3331 * * 5970 6670 6244 3935 1793 3832 6557 * * 70 128 4466 4646 0 * 3263 159 4834 1302 3251 W 71 4701 5441 5097 5709 5677 3235 6375 6386 2912 * 6313 4710 4227 6407 5612 1512 5741 * 3459 6533 71 27 5769 * 0 * 2341 317 4804 1324 3602 D 72 6239 * 2792 1239 * 2725 4531 * 4134 7092 * 4029 6417 4685 5750 6677 6603 6737 * * 72 32 6936 6154 0 * 669 1430 4850 1000 3331 Y 73 * 6894 * * 2421 * 3072 5277 * 3947 * * 6858 * * * * 5571 2381 1420 73 0 * * * * * 0 4940 0 2352 V 74 3584 6322 6230 5195 * * 4822 3852 4103 3505 5491 * * 4101 5250 6105 3059 1429 * * 74 55 * 4740 * * 433 1947 4929 0 2352 P 75 6642 * * * 3702 * * 2791 * 1140 * * 3433 * * * * 2168 * * 75 0 * * * * 1455 655 5092 0 2496 S 76 3362 * * * 4976 * * 4535 * 3420 * * 4968 * * 6710 1452 1610 * * 76 52 * 4808 * * 0 * 5157 0 1884 Y 77 * * * * 3513 * 4952 * * * * * * * * * * * * 184 77 0 * * * * * 0 5151 0 1741 E 78 6904 * 4371 995 * * * * 6214 6283 * * * 3007 3129 * 2971 4351 * * 78 0 * * * * 0 * 5151 0 1741 N 79 * 6600 206 * * 5140 * * * * * 3906 * * * * 5177 * * * 79 7 * 7795 * * * * 5184 0 0 K 80 3708 * 3313 6508 6224 4067 4987 3730 1941 * 4610 3209 * 5231 3555 4775 4660 6013 * 5713 80 0 * * * * 0 * 5186 0 1000 D 81 6354 * 1888 687 * * * * * * * 5632 * 5862 * 6019 4520 * * * 81 15 6604 * 2322 322 * * 5184 1000 0 G 82 6654 * 4579 5301 * 359 * * * * * 3468 * * 6413 4599 * * * * 82 0 * * * * * * 5184 0 0 N 83 4988 5664 401 3924 * 6538 * 6259 * 6506 * 4770 * * * 5857 * 5228 6601 * 83 0 * * * * * * 5186 0 0 W 84 * * * 6604 * * * 5852 5460 3402 3532 * * 5419 2654 6398 3879 2964 1402 * 84 0 * * * * * * 5187 0 0 M 85 * 6585 * * 6014 * * * 3490 2272 838 * * * 4326 * 6536 5044 * 5186 85 0 * * * * * * 5187 0 0 L 86 6585 * * 7032 5194 * 3494 7185 * 418 4887 5375 5664 6649 * * 6193 6744 * * 86 0 * * * * * * 5187 0 0 V 87 2585 * * * * * * 5299 * 3286 * * * * 5926 * 6459 561 * * 87 0 * * * * * * 5189 0 0 G 88 * * * 6294 * 37 * * * * * * * 6287 * * * * * * 88 0 * * * * * * 5189 0 0 D 89 5663 * 102 4992 * * * * * * * 5856 * * * * * * * * 89 0 * * * * * * 5189 0 0 V 90 * * 2493 3203 * * * 5341 * 3522 * * * * * * * 827 * 4708 90 0 * * * * * * 5189 0 0 P 91 * * * * * * * * * * * 4230 129 5983 * * 5915 * * * 91 0 * * * * * * 5179 0 0 W 92 * * * * 3306 * * * * * * * * * * * * * 215 4740 92 0 * * * * * * 5177 0 0 P 93 * * 3955 1760 * 3949 5440 7324 2674 5841 6622 4549 3844 3913 3632 3516 * * 6038 * 93 0 * * * * * * 5176 0 0 M 94 6608 * 3054 2104 * * * 4906 * 4009 1596 4927 * * * 4658 5807 3055 * * 94 0 * * * * * * 5176 0 0 F 95 * * * * 44 * * * * * * * * * * 6136 * 5976 * * 95 0 * * * * * * 5178 0 0 V 96 4177 2869 * * * * * 2917 6388 3030 5114 * * 6136 6826 * 3841 1254 * * 96 0 * * * * * * 5178 0 0 D 97 3578 7081 3878 3486 * 3863 * 4949 3439 * * 2641 7110 4890 3387 2378 4786 4929 * * 97 0 * * * * * * 5178 0 0 T 98 4403 4474 * * 6708 * * 6222 6438 6348 2987 6418 * * * 1242 2349 3264 * * 98 0 * * * * * * 5178 0 0 C 99 2064 2815 * * * * * 6164 * * 4929 * * * * * * 806 * * 99 0 * * * * * * 5178 0 0 K 100 * 6218 6220 5667 * * 5440 * 1116 * * * * 3620 1512 * 5649 * 5884 * 100 0 * * * * * * 5176 0 0 R 101 * 5108 * * * 6418 * * 2878 * * * 4929 * 394 6523 6708 * * 6776 101 0 * * * * * * 5178 0 0 L 102 * * * * * * * 1521 * 836 4094 * 4929 * * * * * * * 102 49 4908 * 0 * * * 5178 1000 0 R 103 * * * 4559 3557 * 5760 * 2727 4824 * * * * 1121 5893 3165 * * 3646 103 0 * * * * * * 5170 0 0 L 104 * * * * * * * 393 * 3481 * * * * * * * 2748 * * 104 0 * * * * * * 5170 0 0 M 105 4497 5341 * * * * * 4325 * 1504 1607 * * * * 6513 5055 3294 * 4124 105 25 5884 * 1000 1000 * * 5062 1000 0 K 106 * * * * * * * * 1570 * 5578 4565 6519 * 1334 3020 3853 * * * 106 66 4476 * 1000 1000 * * 4604 1138 0 G 107 3479 * 5330 * * 2284 * * 5538 * * * 3880 * 3359 1686 2622 * * 5642 107 0 * * * * * * 4376 0 0 S 108 * 4889 4903 4350 * 5981 * * * * * 3681 5376 4070 * 501 * * * * 108 0 * * * * * * 4382 0 0 D 109 * * 1384 852 * 5262 5851 5686 * * * * * * * * * * * * 109 0 * * * * * * 4276 0 0 A 110 615 * 4767 * * 5241 * * * * * 3505 * 4993 * 4912 4201 3705 * * 110 0 * * * * * * 4074 0 0 I 111 3450 * * * 5125 5752 * 2660 3095 3485 * 2564 * * 3786 4296 4268 2715 * * 111 0 * * * * * * 4017 0 0 G 112 4189 * * * * 565 * * 4971 * * 3114 * 4905 4770 4267 * * * * 112 0 * * * * * * 3916 0 0 L 113 * * * * * * * 4127 * 294 4799 * * * * * * 3453 * * 113 0 * * 0 * * * 3574 0 0 //