HHsearch 1.5 NAME c2mtgA_ FAM FILE c2mtgA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mtgA_.a3m DATE Sat Dec 27 08:16:19 2014 LENG 116 match states, 116 columns in multiple alignment FILT 39 out of 43 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4078 -0.3716 SEQ >ss_dssp CCSCCEEEEECCTTSCCCCCSCCCCSSCTHHHHHHHHHHHHHHHHCCEEEEEEECTTTCCCHHHHHHTTTSCCSSSCCEEEEEESCHHHHHHHHHHHHHH TTTTTCCEEEEECCCC >sa_dssp EEECCCAAABABCCCEEBEDEEDEDEEBEDDCCBCDEBEEDACECBEBEDCECBCDEEEDCDDAEECADECEEBEBCBAACADBEDDECADDABDCBDEE BEEEDCCBADDBDEEE >ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCHHHCCCEEEEEEECCHHHHHHHHHHHHHC CCCCCCEEEEEECCCC >ss_conf 9741420221001133201247888661578999999999863007602689854887689678764121421106368999855989999999998400 5787780999833899 >Consensus xxpskxllxxxxxxxxxlxxxxxxxxxxxxqxxxmExlxklFsxxGeIxxIRIlrPgkxiPxdxrxxxxxxpeLxxkxcAlVEfexxexAxxAvexLxxe xxwrxGlrVxLLxxxP >c2mtgA_ NLPSKMLLVYDLYLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAAIKAHEFMITE SQGKENMKAVLIGMKP >UniRef50_UPI000180B3F3(296-375:561) PREDICTED: similar to CG17386 CG17386-PA n=2 Tax=Ciona intestinalis RepID=UPI000180B3F3 E=3e-06 s/c=0.66 id=32% cov=65% ----------------------------------------LFSIYGDLAQVRVLKPGKTLPPYLRDYTAWVPDLGKEYCGLIEFETQEEAQGACREINMK NRDFNSLRVAL--LKP >UniRef50_Q2QVL9(183-304:478) Transposon protein, putative, Mutator sub-class, expressed n=5 Tax=Poaceae RepID=Q2QVL9_ORYSJ E=1e-05 s/c=0.42 id=25% cov=66% -----------------------------------QNLMKIFSTVGSVKTIRTCYPqssNGNSPATNRSAKLDML-FANKLHAFVEYETLEDAEKAILEL NDEKNWRNGLRVRLL---- >UniRef50_UPI000186D50A(237-327:613) lupus la ribonucleoprotein, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D50A E=2e-23 s/c=1.20 id=30% cov=72% ----------------------------------IENVAEIFREFGEIALIRILRPGSSIPADVRSFANKHPEMNGTTSALIEFDRTESAKLAIDRMNDE yRGGSHDMKIIELNAPP >UniRef50_UPI000180C1C4(373-445:572) PREDICTED: similar to CG17386 CG17386-PA n=1 Tax=Ciona intestinalis RepID=UPI000180C1C4 E=1e-15 s/c=1.15 id=31% cov=55% -------------------------------EATIESVISKYKEFGTIAQVRILSPKRPIPAYLQGYVAALPYLGQMWCAIVEYEKPSCTMAAY------ ---------------- >UniRef50_UPI0001924C50(123-228:437) PREDICTED: similar to GJ22012 n=2 Tax=Hydra magnipapillata RepID=UPI0001924C50 E=5e-15 s/c=0.77 id=28% cov=59% -----------------------------------------------ILSVKIIKPCKSFPNDLQSHYSKHPELKEKLVALVEFKNTDSAKEASKTQFTE A--YTGLKVSFLELGP >UniRef50_A3KP60(152-263:471) Zgc:162969 protein n=4 Tax=Danio rerio RepID=A3KP60_DANRE E=1e-24 s/c=1.02 id=37% cov=79% ------------------------ESPGVEQLGIMEAAMRVFSPYGTISSLRILRPGKEIPAELKRYTKKHLELGRKVCAVVEYEYLEGARKAFEALkVE EQQGGRGICVVLLGSR- >UniRef50_UPI000180CD58(311-381:522) PREDICTED: similar to acheron n=1 Tax=Ciona intestinalis RepID=UPI000180CD58 E=2e-13 s/c=1.08 id=33% cov=47% ----------------------------------------LFALFGEIGFVRLLRSDKEVPCDLKNYATQVYDIGKSLCAVVDFDQSEDALAS------- ---------------- >UniRef50_D0MRW0(189-306:582) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0MRW0_PHYIN E=7e-11 s/c=0.58 id=25% cov=31% ----------------------------------------------------------------------------ETYAIIEFVDDEMTKHAVLTLSDQ YNWRTGMQVVL----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * * * * * * 1000 * * * 1000 * * * * 1 0 * * * * * * 1367 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 1367 0 0 P 3 * * * * * * * * * * * * 0 * * * * * * * 3 0 * * * * * * 2086 0 0 S 4 * * * * * * * * * * * * * * * 291 2451 * * * 4 0 * * * * * * 2086 0 0 K 5 * * * * * * * * 374 * * * * * 2130 * * * * * 5 0 * * * * * * 2086 0 0 M 6 * * * * * * * * * 1390 1199 * * 2451 * * * * * * 6 0 * * * * * * 2086 0 0 L 7 * * * * * * * * * 0 * * * * * * * * * * 7 0 * * * * * * 2086 0 0 L 8 * * * * * * * * * 0 * * * * * * * * * * 8 0 * * * * * * 2086 0 0 V 9 1390 * * * * * * * * 2130 * * * * * * * 1358 * * 9 623 * 1512 * * * * 2086 0 0 Y 10 * * * * * * * * * * * * * * * 1629 * * 1467 1666 10 0 * * * * * 0 1803 0 1392 D 11 * * 648 1467 * * * * * * * * * * * * * * * * 11 0 * * * * * 0 1803 0 1392 L 12 * * * * * * * * * 648 * * 1467 * * * * * * * 12 0 * * * * * 0 1803 0 1392 Y 13 * * * * * * * * * * * * * 1629 * * * * 1467 1666 13 648 * 1467 * * * 0 1803 0 1392 L 14 * * * * * * * * 1000 1000 * * * * * * * * * * 14 0 * * * * * 0 1367 0 1582 S 15 * * * * * * * * * * * * * * * 1000 * * 1000 * 15 0 * * * * * 0 1367 0 1582 P 16 * * * * * * * * * * * * 0 * * * * * * * 16 0 * * * * 1393 691 1367 0 1582 K 17 * * * 1629 * 1467 * * 1666 * * * * * * * * * * * 17 0 * * * * * 0 1803 0 1392 L 18 * * * * * * * * * 0 * * * * * * * * * * 18 0 * * * * 0 * 1803 0 1392 W 19 2130 * * 2225 * * * * * * * * * * * * * * 842 * 19 0 * * * * * * 2086 0 0 A 20 1199 * * 2577 * * * * * 2225 * 2451 * * * * * * * * 20 0 * * * * * * 2086 0 0 L 21 * * * * * * * 2451 * 729 * * 2225 * * * * * * * 21 0 * * * * * * 2086 0 0 A 22 2271 * * * * * * * * * * * 2225 2577 * 2451 2130 * * * 22 374 2130 * 2322 322 * * 2086 1000 0 T 23 2225 * 2451 * * 2130 * * * * * * 2577 * * * 2271 * * * 23 0 * * * * * * 2086 0 0 P 24 * * * * * * * * * * * * 1358 * 2577 1177 * * * * 24 0 * * * * * * 2086 0 0 Q 25 * * * 587 * * * * * * * * 2545 2619 * * * * * * 25 0 * * * * * * 2264 0 0 K 26 * * * * * 2536 * * 1636 * * * 2545 2688 * 2479 * * * * 26 0 * * * * * * 2264 0 0 N 27 * * 2688 * * 2536 * * * * * 2619 2479 * 2653 2545 * * * * 27 0 * * * * * * 2264 0 0 G 28 2536 * * * * 1547 * * * 2688 * * 2545 * * 2653 * * * * 28 0 * * * * * * 2264 0 0 R 29 2545 * * * 2653 * * * * * * * 1610 * 2619 * * 2479 * * 29 0 * * * * * * 2264 0 0 V 30 * * * 2479 * * * * * 2545 * * * 2536 * 2653 * 1653 * * 30 250 2653 * 1000 1000 * * 2264 1000 0 Q 31 * * * * * * * * * * * * * 0 * * * * * * 31 0 * * * * * * 2264 0 0 E 32 * * * 1097 * * * * 1966 2760 * * * 2956 * * * * * * 32 0 * * * * * * 2442 0 0 K 33 1635 * * * * 2760 * * 2906 * * 1966 * 2826 * * * * * * 33 0 * * * * * * 2442 0 0 V 34 * * * * 1963 * * 2760 * 1892 * * * * * * 2372 2906 * * 34 0 * * * * * * 2442 0 0 M 35 * * * * * * * 1806 * 2477 904 * * * * * * * * * 35 0 * * * * * * 2907 0 0 E 36 * * 4044 545 * * * * 3744 * * * * 2478 * * * * * * 36 0 * * * * * * 3555 0 0 H 37 3040 * * * * * 2779 4031 * 3744 * 1931 * * * 2309 2914 * * * 37 0 * * * * * * 3555 0 0 L 38 4168 * * * * * * 2569 * 1029 * * * * * * * 1807 * * 38 0 * * * * * * 3761 0 0 L 39 3861 * * 3074 * * * 3392 * 3193 1958 4056 * 3753 * 3087 3345 * * * 39 0 * * * * * * 3761 0 0 K 40 * * * 1627 * 3634 * * 1400 * * * * * 3488 2971 * * * * 40 0 * * * * * * 3791 0 0 L 41 4893 * * * * * * 2099 3057 1028 3903 * * * * * * 4170 * * 41 0 * * * * * * 4080 0 0 F 42 * * * * 87 * * * * * * * * * * * * * * 4089 42 0 * * * * * * 4103 0 0 G 43 2755 * * * * 2235 * * 4089 * * * * 4169 3701 1158 * * * * 43 0 * * * * * * 4103 0 0 T 44 4717 * * 3374 * 5141 * 4570 3005 4071 * * 3105 * * 4671 1438 3532 * * 44 0 * * * * * * 4103 0 0 F 45 * 2226 * * 1692 * * * * * * * * * * * * 1704 * 2556 45 0 * * * * * * 4103 0 0 G 46 * * * * * 0 * * * * * * * * * * * * * * 46 0 * * * * * * 4117 0 0 V 47 4032 * 4636 1351 * * * * 3640 4477 * 4596 5428 * * 2520 3099 5264 * * 47 0 * * * * * * 4117 0 0 I 48 * * * * * * * 814 * 2846 * * * * * * * 1775 * * 48 0 * * * * * * 4230 0 0 S 49 1853 * * * * 4190 * * 1864 3641 * * * * * 2809 3553 3545 * * 49 0 * * * * * * 4230 0 0 S 50 4624 * 4860 * 4190 * * * 4268 1799 * 3872 * 3595 * 2018 2911 * * * 50 0 * * * * * * 4230 0 0 V 51 4657 * * * * * * 901 * 5312 * * * * * * * 1323 * * 51 0 * * * * * * 4230 0 0 R 52 * * * * * * * * 3647 * * * * * 204 * 4268 * * * 52 0 * * * * * * 4230 0 0 I 53 * * * * * * * 734 * 3690 * * * * * * 2938 2391 * * 53 0 * * * * * * 4230 0 0 L 54 * 2058 * * * * * 2208 * 1130 * 4268 * * * * * 4860 * * 54 0 * * * * * * 4230 0 0 K 55 * * 4268 * * * 3646 * 2507 * * * 5064 3043 1214 4520 * * * 3912 55 51 * 4860 * * * * 4230 0 0 P 56 * * * * * 4822 * * * * * * 139 * * 4138 * * * * 56 441 3318 2618 1585 585 * 0 4192 1393 1000 G 57 * 4311 3956 * * 662 * * 4302 * * 2774 * 4146 * * * * * * 57 0 * * * * 2292 329 3913 0 2249 R 58 * * 4501 4201 * 2817 5053 * 1247 * 5192 3215 * * 3266 3856 * * * * 58 0 * * * * 404 2034 3972 0 1887 E 59 5301 * 5206 2010 * 3900 * * 3084 * 5361 3712 2106 4847 * 3811 3731 * * * 59 65 * 4513 * * * 0 4148 0 1000 L 60 3287 * * * 4395 * * 1607 * 1839 * * * * * 4748 4723 2581 * * 60 0 * * * * 1020 980 4072 0 1204 P 61 5005 * * * * * * * * * * * 186 * * 4772 * 4238 * * 61 0 * * * * * 0 4174 0 1000 P 62 2119 4162 4619 4479 * * * 4844 4238 * * 3150 2371 3789 * 3255 * 4117 * * 62 0 * * * * 0 * 4174 0 1000 D 63 3965 * 955 3266 * 3355 * * * * * * * * * 3283 4921 * * 3595 63 0 * * * * * * 4230 0 0 I 64 3412 * * * * * * 4463 * 1580 * 3765 * * * 3534 3781 1768 * * 64 0 * * * * * * 4230 0 0 R 65 4669 * * * * 4903 * 5064 2476 4879 * * * 3225 1046 3435 * * * * 65 0 * * * * * * 4230 0 0 R 66 * * 4674 4889 * 4520 5366 * 3462 * * 3534 3224 2991 2625 2088 4268 * * * 66 29 5652 * 1585 585 * * 4230 1000 0 I 67 2186 * * * 3107 * 3383 5284 * 5243 * * * 5192 4624 3945 5652 4903 * 1599 67 0 * * * * * * 4230 0 0 S 68 2786 * * 4889 * * 5652 4473 2366 5516 3390 * 4624 * * 2796 2951 3463 * 4625 68 0 * * * * * * 4230 0 0 S 69 2329 * * 5192 * 5243 * * 2427 4162 * 2742 * * * 2589 2398 * * * 69 0 * * * * * * 4230 0 0 R 70 3534 * 3877 * * 4624 * * 1719 * * * 4268 4190 2184 3872 5192 * 4674 4657 70 51 * 4860 * * * * 4230 0 0 Y 71 * * 2580 * 4089 * 1751 * * 4482 4885 4089 * 5395 5162 4848 * 3354 * 2685 71 0 * * * * * 0 4192 0 1000 S 72 3994 * * * 3363 5059 * * * 4060 4779 * 993 * * 3516 3898 * * 4138 72 50 * 4885 * * * 0 4192 0 1000 Q 73 5143 * 3335 1327 * * * * 3785 2971 * 4149 * 3090 * 5461 4965 * * 4460 73 134 4959 4144 2000 415 838 1182 4168 1000 1485 V 74 * * * * 3793 * * 3416 * 664 3296 * * * * * * 3857 * 4956 74 146 3374 * 942 1060 * 0 4179 2015 1882 G 75 3830 * * * * 1435 * * 4499 3512 * 5039 * 4418 * 1613 * 5395 * * 75 0 * * * * 535 1691 4179 0 1882 T 76 5207 * * 4584 * 5153 4824 * 3078 * * 1598 * 2671 5260 2684 4398 4926 * * 76 41 5156 * 0 * 0 * 4192 1000 1000 Q 77 * 4173 * 2466 * * * * 1123 * 4603 3981 * 4192 4576 3695 5254 * * * 77 0 * * * * * * 4264 0 0 E 78 4421 4470 * 3071 * * * 4640 * 2155 4680 4237 4891 * * * 2768 2535 4603 4702 78 0 * * * * * * 4264 0 0 C 79 * 898 * * 4937 * 1786 4898 * * * * * * * 4377 * 4661 * 5685 79 0 * * * * * * 4264 0 0 A 80 184 * * * * 4297 * * * * * * * * * * * 3865 * * 80 0 * * * * * * 3567 0 0 I 81 * * * * 2737 * * 2933 * 1082 4918 * * * * * * 2471 * 4912 81 0 * * * * * * 3567 0 0 V 82 * * * * * * * 1702 * * * * * * * * * 530 * * 82 0 * * * * * * 3567 0 0 E 83 * * 4158 154 * * * * * * * * * 4472 * * * * * * 83 0 * * * * * * 3567 0 0 F 84 * * * * 694 * * * * * * * * * * * * * * 1389 84 0 * * * * * * 3567 0 0 E 85 * * 2471 805 * * * * 5110 5148 * 4936 * * * 5636 3965 3770 * * 85 0 * * * * * * 3567 0 0 E 86 5221 * 3580 3377 * 6008 * 5726 2684 * * 3859 * 3486 4433 2744 2129 * * 5574 86 0 * * * * * * 3567 0 0 V 87 4912 * 4306 * * * 4791 5159 * 3643 5299 * 3456 4297 4936 2384 2431 2359 * * 87 0 * * * * * * 3567 0 0 E 88 3705 * 3273 555 * * * * * * * * * 5168 * 3806 * 4645 * * 88 0 * * * * * * 3567 0 0 A 89 2038 4530 2782 4297 * 4827 4386 4645 * 4449 4306 * * 5168 * 1891 * * * * 89 0 * * * * * * 3567 0 0 A 90 210 * * * * * * * * * * * * * * * 2882 * * * 90 0 * * * * * * 3567 0 0 I 91 3765 * 4645 2349 * 4472 3428 5729 3278 3268 4023 * * 3056 2789 * * * * * 91 19 * 6291 * * * * 3567 0 0 K 92 3326 * * 4105 * 3905 4302 * 1569 5395 4782 3945 * 4463 2776 5835 4214 * * * 92 0 * * * * * 0 3573 0 1000 A 93 219 4380 * * * * * * * * * * * * * 3432 * * * * 93 0 * * * * * 0 3573 0 1000 H 94 3191 3503 * * 5203 * 5154 3063 * 3956 * 5084 * 4951 * 4458 * 1451 * 3477 94 50 4883 * 1585 585 0 * 3906 1000 1000 E 95 3926 * 3657 1416 * * * * 2864 3856 * * * 4421 4077 4049 4097 4355 * * 95 0 * * * * * * 4066 0 0 F 96 3262 * * 1962 3984 4330 * * 3987 * 3121 5660 * * 4964 4094 2269 5050 * * 96 0 * * * * * * 4167 0 0 M 97 * * * * 4062 * * 3166 * 831 2698 * * 4402 * * * 3942 * * 97 45 5029 * 0 * * * 4167 1000 0 I 98 4571 * * * 4554 5042 * 4232 * 4598 * 1468 * * 4878 2186 3213 3890 * * 98 81 4193 * 0 * * * 3997 1000 0 T 99 2835 * 1566 3807 * 3803 * * 4648 4131 3868 4041 * 5119 * 5145 3384 * * * 99 0 * * * * * * 3997 0 0 E 100 5207 * 2699 938 * 4093 * * 3161 * * * * 2981 * * * * * * 100 154 3300 * 752 1299 * * 3997 1606 0 S 101 2969 * 3501 * * 2714 * * 4375 * * 3862 * 3580 1962 3042 * * * 4240 101 115 * 3705 * * * * 3987 0 0 Q 102 4309 * 2961 * * 4017 * * 4205 * * 1380 4608 2541 3729 4936 * * * * 102 0 * * * * * 0 3813 0 1557 G 103 * * 2405 * * 2081 * * * * * * * * * * * * 799 * 103 0 * * * * 913 1093 3673 0 1557 K 104 * * * 4509 3690 4246 * * 4091 4061 * * * 4280 877 4055 * * * 4289 104 0 * * * * * 0 3774 0 1000 E 105 * * 2970 3285 4324 * 4055 * 2928 4280 * 2375 * * 4246 3680 2706 * * * 105 0 * * * * 0 * 3774 0 1000 N 106 * * 4071 * * 307 * * * * * 4105 * * * 3756 * * * * 106 0 * * * * * * 3812 0 0 M 107 * * * * * * * 1975 * 1110 1825 * * * * * * * * * 107 0 * * * * * * 3812 0 0 K 108 * 4312 * * * 4135 3390 * 1826 * * * * 3929 1153 * * * * * 108 0 * * * * * * 3812 0 0 A 109 4105 * * * * * * 4071 * * * * * * * * 5284 223 * * 109 34 5423 * 0 * * * 3812 1000 0 V 110 2966 * * * * * * 3126 4299 * * * * * 2008 3090 3921 1865 * * 110 0 * * * * * * 3626 0 0 L 111 * * * 3126 3962 * * * * 284 * * * * * * * * * * 111 126 * 3581 * * * * 3626 0 0 I 112 * * * * * * * 2804 * 356 3728 * * * * * * * * * 112 0 * * * * * 0 3339 0 1000 G 113 3500 * * 3043 * 1329 * 2797 * * * 2230 * * 4828 * * * * * 113 0 * * * * 0 * 3072 0 1000 M 114 2990 3472 * * * * * * * 1336 2967 2882 * * * 3009 * * * * 114 0 * * * * * * 3253 0 0 K 115 * * * * * 3025 * * 1317 * * * 2990 * 1944 3472 * * * * 115 0 * * * * * * 3253 0 0 P 116 * * * * * * * * * * * * 0 * * * * * * * 116 0 * * 0 * * * 2703 0 0 //