HHsearch 1.5 NAME c2mqkA_ FAM FILE c2mqkA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mqkA_.a3m DATE Sat Jul 4 08:20:35 2015 LENG 65 match states, 65 columns in multiple alignment FILT 58 out of 62 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.4105 0.5402 SEQ >ss_dssp CCCCHHHHHHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHC >sa_dssp EECEDDDACCCAEEBCEEEEBEDEDABEDBECEEDBACCACEEECEDECEEBAECABEBBEECEE >ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC >ss_conf 98898999999999999659989999998199989999996187778989999999999997429 >Consensus xxmnxxxlrexlxxxxxxxxlSqxxlAkxigisxsxlSxxlxgkYxgxxxxixxklxxwlexxxa >c2mqkA_ GPMNISDIRAGLRTLVENEETTFKQIALESGLSTGTISSFINDKYNGDNERVSQTLQRWLEKYHA >UniRef50_Q7VI56(4-64:290) Putative uncharacterized protein n=2 Tax=Helicobacter RepID=Q7VI56_HELHP E=3e-11 s/c=1.14 id=18% cov=95% --VDLNQVCEELEIFLKVQNISQAALGRAIGVSSASISTFRKGEYKGNNKELGRKIKLYLDNY-- >UniRef50_UPI0001745C02(15-72:324) phage transposase n=2 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745C02 E=0.0005 s/c=0.79 id=21% cov=65% -------LRQQLQKYKDRESLSLKDLGKRIDASEAMVSRYLSDRFEGD----------------- >UniRef50_A9ID00(20-76:322) DNA transposition protein (GpB) n=1 Tax=Bordetella petrii DSM 12804 RepID=A9ID00_BORPD E=1e-10 s/c=1.18 id=23% cov=80% ----------EVKAIMDAEGLTQAQVSGLTGIGKARLSQWLNSVYTGNVGAIEADIRRWLE---- >UniRef50_UPI0001BC581C(1-61:323) putative bacteriophage DNA transposition protein B n=3 Tax=Fusobacterium RepID=UPI0001BC581C E=5e-10 s/c=1.07 id=23% cov=95% --MNRENTIVRLERFAEQKGLSYRKIAQMIGIGQSTLSEIRKGTYRGNEEEILLKLEDLMERH-- >UniRef50_C6J0H2(22-71:328) Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C6J0H2_9BACL E=1e-09 s/c=1.29 id=18% cov=78% ----------QVKSLMDEKGMTITELAKAINYSRPALSQYLSGKYPSDPTEIEQAITAFI----- >UniRef50_C2XM48(25-87:92) PXO-14-like conserved protein n=2 Tax=Bacillus cereus RepID=C2XM48_BACCE E=3e-09 s/c=1.00 id=23% cov=95% -PNSIEFYIEKMNTYKEKNNKSIRELAKEMDISYSTLSRMLSGKRKRLNDDTKNKLDKWIER--- >UniRef50_A3CYC0(20-79:105) Transcriptional regulator, Fis family n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CYC0_METMJ E=1e-05 s/c=0.85 id=20% cov=92% ----LPQMRAEMvYRLVNERGISQSEASKRLGISRAAISQYMSRKRGFNREDLPDNLESVIERW-- >UniRef50_B6YXW3(13-67:296) Hypothetical transcription regulator n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YXW3_THEON E=2e-05 s/c=0.91 id=26% cov=54% ------------------------QIAEYLGITQAMVSKYLASKYKVPPKEVAGELEK------- >UniRef50_A0E161(6-72:386) Chromosome undetermined scaffold_72, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0E161_PARTE E=0.0002 s/c=0.71 id=22% cov=92% ------DLKSRIQEILQKHNIKQVDLAREIGIHHSTLSLWMQNKNKprkqdisnSQSTRIEELLERWIATFHA # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 P 2 * * * * * * * * * * * * 0 * * * * * * * 2 0 * * * * * * 1706 0 0 M 3 * * * * * * * 3037 * * 645 3144 * * * * * 2995 * * 3 0 * * * * * * 3675 0 0 N 4 * * 2651 * * * * * 3685 * * 763 3535 * * 3513 * * * * 4 0 * * * * * * 3955 0 0 I 5 4023 * * * * * * 1880 * 2460 2110 * * * 3986 * * 2393 * * 5 0 * * * * * * 4332 0 0 S 6 * * * 3045 * * 4161 * * * * 1751 2614 4038 * 2281 3380 * * * 6 59 * 4648 * * * * 4403 0 0 D 7 * * 2319 2358 4145 * 4071 * 4375 * * 2394 * 3371 * 3277 * * * 4315 7 0 * * * * 0 * 4603 0 1000 I 8 * * * * 3297 * * 2042 * 1374 3991 * * * * * 4821 2897 * 4751 8 0 * * * * * * 4817 0 0 R 9 4858 4909 * * * 4665 * 2287 2093 * * * * 4078 1342 * * * * * 9 0 * * * * * * 4829 0 0 A 10 3129 * 5590 1418 * * * * 4041 5015 * 4508 * 2130 * 3818 5187 5142 * * 10 0 * * * * * * 4874 0 0 G 11 4221 * 3550 2650 * 5142 * * 3812 5080 * 5092 * 1944 1984 * 5033 * * * 11 0 * * * * * * 4905 0 0 L 12 * * * * * * * 2249 * 1055 3281 * * * * * * 2283 * * 12 42 5109 * 0 * * * 4931 1000 0 R 13 5203 * 5443 2935 * * * 5520 1849 3793 * 3753 * 2613 2626 5719 * * * 5109 13 0 * * * * * * 4931 0 0 T 14 2963 * 3962 2289 * * 5456 3951 3373 * * * * 3091 3630 4561 2486 * * * 14 0 * * * * * * 4931 0 0 L 15 3234 * * 5518 3642 * 4785 3288 * 1638 * * * * * * * 3159 * 2185 15 0 * * * * * * 4951 0 0 V 16 3752 * * * * * 4782 2506 3409 1736 2305 * * * 4998 * * 3550 * * 16 28 * 5703 * * * * 4950 0 0 E 17 5401 * 2896 1673 * * 5293 4701 3600 * * 3546 * 2727 5894 3582 5406 * * 5540 17 38 5272 * 1585 585 0 * 4860 1000 1000 N 18 3747 * 4647 1918 * 5578 * * 4069 * 4802 3242 * 4136 3282 2665 4165 5276 * * 18 0 * * * * * * 4861 0 0 E 19 3421 * * 2181 * 4176 4745 * 2639 * 6038 2504 * 3849 3659 4175 4735 * * * 19 0 * * * * * * 4861 0 0 E 20 * * 4779 3065 * 1338 * * 2587 * * 2404 * 5793 * 4215 * 5567 * * 20 0 * * * * * * 4838 0 0 T 21 * 4861 * * 5744 * * 1960 4777 1607 3416 * * * * 4531 5566 2936 4779 * 21 0 * * * * * * 4838 0 0 T 22 * * * * * * * * 3835 * * 5571 5339 * * 975 1413 * * * 22 0 * * * * * * 4845 0 0 F 23 4452 * * * 4691 * * 3629 4148 3881 * 5237 * 704 5779 5935 * * * 4811 23 0 * * * * * * 4845 0 0 K 24 1893 5559 * 5623 * 5789 * * 2671 * * 4400 * * 2664 2839 3481 4095 * 5567 24 0 * * * * * * 4790 0 0 Q 25 3108 * 2798 1758 * * 5713 * 2703 * * * * 2168 4342 * * * * * 25 0 * * * * * * 4727 0 0 I 26 3444 * * * * * * 1920 * 1057 4941 * * * * * * 2935 * * 26 0 * * * * * * 4548 0 0 A 27 285 * * * * 4090 * * * * * * * * * 3054 * * * * 27 0 * * * * * * 4548 0 0 L 28 5869 * 4394 4926 * 4225 * 5959 1481 5961 * 5323 5525 4307 1537 5903 * * * * 28 0 * * * * * * 4548 0 0 E 29 3171 * 4941 1505 * 5849 5951 5525 3421 4149 5798 * * 4541 2482 5711 5425 * * 5901 29 0 * * * * * * 4548 0 0 S 30 4556 4723 * * * * * 1198 * 2494 4400 * * * * 2944 3437 4769 * * 30 0 * * * * * * 4548 0 0 G 31 4906 * 2784 5655 * 485 * * * * * 4237 * * * 4883 * * * * 31 0 * * * * * * 4452 0 0 L 32 4984 * * * * * * 986 5005 4024 3819 5929 * * 5473 * 5842 2276 * 4753 32 0 * * * * * * 4452 0 0 S 33 * * 5321 * * 3197 4928 * * * * 3652 4651 * * 695 3379 * * * 33 0 * * * * * * 4452 0 0 T 34 3536 * 4193 3478 * * 4928 6109 4608 * * 6093 2109 3884 2941 2575 4344 * * 5674 34 0 * * * * * * 4452 0 0 G 35 1768 * * * * 2716 * * 5617 * * 5346 4492 * * 1596 2899 * * * 35 0 * * * * * * 4452 0 0 T 36 2143 * * * * * * 5321 * * 3260 4475 * * 4820 2858 1679 3479 * 5395 36 0 * * * * * * 4452 0 0 I 37 * * * * 3777 * * 1812 * 1137 5602 * * * * * * 2582 * * 37 0 * * * * * * 4452 0 0 S 38 * * * * * 5039 * * * * * 3006 * * * 287 5293 * * * 38 0 * * * * * * 4452 0 0 S 39 3743 * 3022 4946 * 3704 * * 3141 4928 4385 * * 1842 3167 3596 5266 * * * 39 0 * * * * * * 4452 0 0 F 40 * * * * 2665 * * 3793 * 4127 5674 * * * * * * 5205 2172 1171 40 0 * * * * * * 4452 0 0 I 41 * 4883 * 5039 4087 * * 3993 5698 801 3894 * * * 3149 * * 5772 * 5465 41 0 * * * * * * 4452 0 0 N 42 4146 * * * * 6065 4273 * 2638 4918 * 1649 * 4175 4332 2241 4387 * * * 42 0 * * * * * * 4452 0 0 D 43 * * 3466 5395 * 598 * * 6120 * * 3561 * 5842 5882 4113 * * * 4883 43 0 * * * * * * 4452 0 0 K 44 * * 4885 5266 * * * * 685 * * 3933 * * 3584 4610 3524 4596 * * 44 38 5278 * 0 * * * 4452 1000 0 Y 45 * * * * 5096 * * * * * * 4937 6036 * 2791 * 4949 * * 423 45 32 5510 * 0 * * * 4572 1000 0 N 46 3933 * 4775 2556 * 3902 * * 1546 * * 4930 3736 4642 5532 4739 3663 4933 * * 46 76 4280 * 2677 245 * * 4791 1635 0 G 47 3212 * * * 5413 664 * * * * * * 5852 * 3208 3539 * 5274 * * 47 58 5475 5858 1000 1000 * * 4791 1000 0 D 48 * * 1741 * * 5456 * * 3032 3340 5841 1857 4683 4085 5391 4581 * * * * 48 0 * * * * * 0 4761 0 1000 N 49 5735 * * 3775 * * 5919 4081 4992 3831 * 2371 4076 3430 4279 2814 4431 3020 * 5491 49 0 * * * * 0 * 4722 0 1000 E 50 4503 * 2045 1447 * 3446 * 4603 2907 * * * * 5241 * * 4209 * * * 50 0 * * * * * * 4730 0 0 R 51 3118 * 3541 1917 * 5480 * * 2302 * * 5718 * * 2937 5361 2888 * * * 51 27 5761 * 1000 1000 * * 4730 1000 0 V 52 4545 * * * * * * 1372 * 2516 * * * 3622 * * 3595 2107 * * 52 32 5530 * 1585 585 * * 4730 1000 0 S 53 2181 5620 5362 1683 * 4914 * * 4368 3285 * 3497 4986 * 5179 4309 4609 * * * 53 0 * * * * * * 4889 0 0 Q 54 2555 * 4119 2680 * 3543 * * 4324 4143 * 3093 * 3395 2857 * 3764 * * * 54 0 * * * * * * 4863 0 0 T 55 3330 * 5178 4151 * * * * 1041 3496 * 4172 5336 5339 4349 5491 5454 4540 * * 55 0 * * * * * * 4863 0 0 L 56 * * * * * * * 1780 * 865 5083 * * * * * * 2939 * * 56 44 5053 * 1585 585 * * 4863 1000 0 Q 57 2574 5491 3071 1446 * * 4892 * 3638 * * 5648 * 4304 3724 * 3976 * * * 57 0 * * * * * * 4863 0 0 R 58 2589 5442 4909 3323 * * * * 2835 4895 * 5336 * 2914 2444 2898 5139 * * * 58 0 * * * * * * 4863 0 0 W 59 * * * * 2782 5023 * * * 3555 5038 * * * * * * 4008 885 3258 59 0 * * * * * * 4829 0 0 L 60 5319 4521 * * 4236 * * 2013 * 893 4865 * * * * * * 4828 * 5472 60 0 * * * * * * 4829 0 0 E 61 4341 * 2586 1015 * * * * 4739 * 4792 2808 * 3779 * * * * * * 61 0 * * * * * * 4937 0 0 K 62 4491 * 4567 3018 * 4494 * * 2897 * * 3508 * * 1433 4600 3939 * * 4426 62 0 * * * * * * 4646 0 0 Y 63 * * * * 3327 * 2790 * 3786 * * * * 3900 3732 * * * 2263 1588 63 0 * * * * * * 4191 0 0 H 64 * * * * * * 976 * * 2798 * 2592 * 2457 * * * * * * 64 0 * * * * * * 3130 0 0 A 65 0 * * * * * * * * * * * * * * * * * * * 65 0 * * 0 * * * 2765 0 0 //