HHsearch 1.5 NAME c2mpcA_ FAM FILE c2mpcA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mpcA_.a3m DATE Sat Jul 19 11:45:54 2014 LENG 90 match states, 90 columns in multiple alignment FILT 62 out of 66 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.7 EVD 0.4361 0.7211 SEQ >ss_dssp CHHHHHHHHHHHSCHHHHHHHHHHHTTSCCCTTCCCCCHHHHHHCCTTTHHHHHHHHTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC >sa_dssp EBCDCADDBAEEAEEECBDEACDDBCECEDCEECDEADEDDAEEBECDDAAECACECBCDEDABDAACDBAEDBECEEBADDADEBCEEE >ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC >ss_conf 978999999984059999999999325772236578998995168987899999986297999999999999819089999999984349 >Consensus txrxxLlxxLexLxxxElkxFKxxLxxxxlxxxxxxipxxxlexAxxxdlaxlLvxxyxxxxAxxvtlxilxxmnxxxLaexlxxxxxxx >c2mpcA_ TPSDHLLSTLEELVPYDFEKFKFKLQNTSVQKEHSRIPRSQIQRARPVKMATLLVTYYGEEYAVQLTLQVLRAINQRLLAEELHRAAIQL >UniRef50_D2I576(8-91:1490) Putative uncharacterized protein (Fragment) n=1 Tax=Ailuropoda melanoleuca RepID=D2I576_AILME E=4e-06 s/c=0.63 id=24% cov=94% -----LAWYLDVMGKEELKEFQLRLSEKPLCGPSPGPTVAQLQQAGGLEVASHLVAQYGEQRAWDLALHTWEQMGLSGLCAQA-RAEAAL >UniRef50_Q4PLS0(11-90:1046) NACHT n=3 Tax=Murinae RepID=Q4PLS0_MOUSE E=1e-05 s/c=0.64 id=23% cov=90% -----LKDVLRKLDKTELNNFKRTLRSCSLPDTMKQINKLTMDLANGAQLAEILTDHCPSAWIKRVTVQILEEINRVDLAELVVK----- >UniRef50_UPI0000F2BD5F(7-85:358) PREDICTED: similar to interferon, gamma-inducible protein 16, n=1 Tax=Monodelphis domestica RepID=UPI0000F2BD5F E=4e-05 s/c=0.62 id=26% cov=86% ---EILLSGLEELQNEDFKKFKFFLSNDCL--------MMRVHNLDRIDLATCMKKQLPCPSFMNKFIEILKKMNLNETAKKYKEQK--- >UniRef50_C3Y026(279-360:1019) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y026_BRAFL E=0.0003 s/c=0.56 id=22% cov=92% --KELLLGVFEHMDDEEYTSFQNRLEGV-VSSGNKSIPRRLIMGTSRQGMPELILRYFLRKEALEMVKELLRRLPNMQLFERIQQ----- >UniRef50_B9DR52(17-81:1188) MATER protein n=1 Tax=Sus scrofa RepID=B9DR52_PIG E=9e-12 s/c=1.10 id=21% cov=73% -------WCFEHLGKEELETFKERLKEPTSEHATCSFPLAEVDDAKSEHLTSLLHEYFPPSFAWSLPPSFLK------------------ >UniRef50_Q4SV51(7-90:1128) Chromosome undetermined SCAF13803, whole genome shotgun sequence n=3 Tax=Tetraodontidae RepID=Q4SV51_TETNG E=9e-15 s/c=0.97 id=25% cov=93% ----LLKDYLEEMNDSRLSEFKWYLSQHK-QNGCRPLQRSQLESGTRTDTVDQLVQTFGEDGALVVAVDILYRMGLNHLATKLAQGKI-- >UniRef50_UPI0000F20BBF(158-233:761) PREDICTED: similar to novel NACHT domain containing protein n=1 Tax=Danio rerio RepID=UPI0000F20BBF E=4e-10 s/c=0.87 id=21% cov=84% ---NALTICLKKLAQDELKVFKKLLWDRYPERF-----RDPLDGLDIVDLVDKMLELCDIEVSMKITLAILHFLNLKKLSEYL------- >UniRef50_Q66X22-2(9-89:501) Isoform 2 of NACHT, LRR and PYD domains-containing protein 9B n=1 Tax=Mus musculus RepID=Q66X22-2 E=9e-15 s/c=1.00 id=23% cov=91% -----LLKLLQKLSDEEFQRFKELLREEPEKFKLKPISWTKIENSSKESLVTLLNTHYPGQ-AWNMMLSLFLQVNREDLSIMAQKKK--- >UniRef50_P59044(30-103:892) NACHT, LRR and PYD domains-containing protein 6 n=16 Tax=Mammalia RepID=NALP6_HUMAN E=2e-11 s/c=0.95 id=25% cov=83% -------------SQEQLKRFRHKLRDVGPDG--RSIPWGRLERADAVDLAEQLAQFYGPEPALEVARKTLKRADARDVAAQLQERRLQ- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * * 0 * * * 1 0 * * * * * * 2725 0 0 P 2 * * * * * * * 2847 * 1503 * * 1338 * * * * 3150 * * 2 0 * * * * * * 2987 0 0 S 3 * * * * * * * * 2028 * * * * * 622 3252 * * * * 3 0 * * * * * * 3995 0 0 D 4 * 4224 1262 1757 * * * * 4542 * * 2687 * 4812 * * * * * * 4 0 * * * * * * 4573 0 0 H 5 2750 * * 5057 * * 2664 3201 3073 1615 * * * * * 4596 4661 5127 * * 5 0 * * * * * * 4895 0 0 L 6 * * * * * * * 4622 * 91 5606 * * * * * * * * * 6 0 * * * * * * 5650 0 0 L 7 3744 * * * * * * 5910 3674 965 3998 * * 3617 5131 5941 3609 4401 * * 7 0 * * * * * * 5650 0 0 S 8 4682 * 2525 4113 5303 4336 * 5321 4167 4391 * 3717 5581 4127 5414 3765 4618 * 2092 * 8 0 * * * * * * 5743 0 0 T 9 3322 3577 * * * 3928 * 4911 * 5848 4646 * * * * 3245 2834 2988 * 1795 9 0 * * * * * * 5752 0 0 L 10 * * * * 3111 * * * * 177 * * * * * * * * * * 10 0 * * * * * * 5904 0 0 E 11 * * 2633 759 * 5753 * * 4359 * 5700 * * 3971 5334 4743 * 5837 * 5813 11 0 * * * * * * 5904 0 0 E 12 5700 * 2711 1695 5727 4073 3570 * 3323 * 5656 3703 * 3773 4670 5169 * 5649 * * 12 0 * * * * * * 5904 0 0 L 13 * * * * * * * 4268 * 238 3787 * * * 5169 * * * * * 13 0 * * * * * * 5904 0 0 V 14 5481 * 2581 3347 5649 2768 * 6273 4594 4728 * 3161 * 5409 4672 2993 3732 3681 * * 14 0 * * * * * * 5914 0 0 P 15 3720 * 2822 2090 * 5435 * * 2184 5558 * 5409 4987 2765 4115 5408 * * * * 15 0 * * * * * * 5914 0 0 Y 16 3191 * 2641 1446 * 4914 6207 * 3394 5811 * 4749 * * 6233 4847 5402 4444 * 4359 16 0 * * * * * * 5964 0 0 D 17 * * 2956 615 * * 5946 * 4922 * * 5178 * 3497 4874 * 5736 * * * 17 0 * * * * * * 5964 0 0 F 18 * * * * 1555 * * * * 768 * * 5241 * * * * 6028 * 5021 18 0 * * * * * * 5964 0 0 E 19 * * 5851 2821 * * * 5769 1398 * 6433 3852 * 2698 3328 4165 5021 * 5484 * 19 0 * * * * * * 5964 0 0 K 20 * * 5431 2604 * * * 5824 1595 * * 5402 * 4631 2333 3869 3170 5528 * * 20 0 * * * * * * 5964 0 0 F 21 * * * * 32 * * * * 5523 * * * * * * * * * * 21 0 * * * * * * 5964 0 0 K 22 * 5811 * * * * * * 466 * * * * 2388 4580 * 5291 * * * 22 0 * * * * * * 5964 0 0 F 23 5825 * * 2808 2974 5916 6028 * 3951 2503 5776 5021 * 4929 3450 3669 * * 2710 4855 23 25 * 5846 * * * * 5964 0 0 K 24 * 4483 * * 3521 * 3935 * 2490 2108 * 5731 * 3698 2831 * 5361 * * 2921 24 0 * * * * * 0 5949 0 1000 L 25 * * * * 5483 * * 4090 * 122 * * * * * * * * * * 25 65 * 4502 * * * 0 5949 0 1000 Q 26 4558 5157 * 3563 * 5051 6407 6608 2404 3814 5028 5871 4316 3595 3326 3058 4859 5887 3920 6086 26 67 * 4472 * * 899 1109 5940 0 2366 N 27 4897 * 1987 2853 * 3373 4792 * 3800 * * 2770 5727 3546 5401 3927 5022 * * * 27 205 5727 3138 2807 222 761 1287 5911 1000 2564 T 28 * 5233 4320 2814 4731 5889 4041 3516 2986 * 4287 * 4005 * 5397 3982 3096 3735 4657 5644 28 135 * 3480 * * 2421 298 5806 0 3162 S 29 2969 5096 4414 4077 * 2997 * 4002 4579 4904 * 5734 2570 5830 * 2793 3637 5690 * 5312 29 36 * 5359 * * 1531 613 5709 0 3700 V 30 * * * 4498 * * 4358 5439 * 982 6176 * 3265 5472 * 4114 6046 2603 * * 30 93 5801 4486 2585 263 698 1383 5828 1000 3094 Q 31 3975 5647 4604 2244 * 4613 * * 2894 4827 * 5831 5312 2785 3339 2817 5315 * * * 31 52 * 4824 * * 1486 637 5874 0 2629 K 32 5824 * 3748 4063 3908 3371 4762 * 2891 3165 * 5637 3321 * 2676 3731 4910 5927 * * 32 48 * 4932 * * 653 1459 5875 0 2655 E 33 3681 6143 5092 2881 5425 1259 4439 * 3887 6149 * * 5666 4589 6337 5744 3934 5934 * * 33 60 5866 5425 0 * 1826 478 5870 1000 2502 H 34 4801 4130 5876 3133 2854 * 3377 * * 2477 5321 4951 * 5386 * 3919 4220 4267 5484 3530 34 35 * 5384 * * 962 1039 5824 0 2457 S 35 5926 4197 5004 4897 4013 3846 * 5680 2428 5703 5788 4137 2264 3397 4014 3873 * * * * 35 32 * 5493 * * * 0 5820 0 2148 R 36 * 6546 6617 * * 3898 5987 * 3176 6231 * 4707 1992 3426 2681 2369 5481 5826 * * 36 0 * * * * 1770 501 5785 0 2527 I 37 * * * 4446 4051 * * 820 * 3102 4877 5703 5673 * * * 5076 3204 * * 37 0 * * * * * 0 5820 0 2148 P 38 4565 * * * * 5493 * * * * * 4498 758 5698 4017 3268 3117 * * * 38 0 * * * * 595 1566 5820 0 2148 R 39 5978 * * * * * 5775 5718 2875 3850 4571 * 4686 4156 1693 * 5839 4446 2110 * 39 0 * * * * * 0 5929 0 1000 S 40 2587 5887 3144 * 5870 1832 * 4633 4805 5383 4478 5065 * * 5003 3085 3612 * * * 40 0 * * * * 0 * 5929 0 1000 Q 41 5027 * 5487 2084 * * 6646 6514 2921 4573 * 4235 5528 2105 3216 5010 4188 6017 * * 41 0 * * * * * * 5964 0 0 I 42 * * * * * * * 3138 * 1055 3504 * 5804 * * * 5776 1832 * * 42 0 * * * * * * 5964 0 0 Q 43 * * 2930 1002 * * 4237 * 2768 5889 5021 5846 * 3959 5782 * 5491 * * * 43 39 * 5241 * * * * 5964 0 0 R 44 4816 * 4249 6002 5652 3198 * 5801 1527 5390 5536 2646 5226 5546 4527 3818 4842 * * * 44 109 4324 5472 0 * 0 * 5912 1863 1000 A 45 648 * * * * 4887 * * 3513 3613 5854 * * * * 4193 3525 * * * 45 0 * * * * * 0 5906 0 1000 R 46 * * 1391 5478 * 3913 4830 5509 4643 * * 3136 * 6277 4063 2137 5729 * * * 46 0 * * * * * 0 5906 0 1000 P 47 4263 5051 5478 4484 5758 2475 5759 5502 4583 * * * 2436 * 1656 5822 * 5876 5895 5929 47 0 * * * * 0 * 5906 0 1000 V 48 4635 * 5054 2655 * 4862 5736 3390 3556 3066 5804 * 5241 3563 5677 5592 3565 2606 * * 48 33 5487 * 0 * * * 5964 1000 0 K 49 * 5900 1348 2272 * 5021 5871 * 2967 * * 4437 * 3677 * 4245 6017 6060 * * 49 0 * * * * * * 5964 0 0 M 50 * * * * * * * 4360 * 828 4237 * * * * * 3009 2247 * * 50 0 * * * * * * 5964 0 0 A 51 1002 * 5769 * * * * 5592 * 5949 * * 5021 * * 5059 4044 1626 * * 51 0 * * * * * * 5964 0 0 T 52 * * 1712 2382 5782 * 4929 * 5484 5900 * 3489 * 5243 5190 2531 3365 * * * 52 0 * * * * * * 5964 0 0 L 53 * 4790 * * * * 5730 3254 3231 977 6207 * * 3921 5241 6331 6028 4642 * 4267 53 0 * * * * * * 5964 0 0 L 54 * * * * 5642 * * 3342 * 847 1703 * * 5769 * * * * * * 54 0 * * * * * * 5964 0 0 V 55 6028 * 5123 6233 * 5592 4280 2234 4841 2929 6007 6122 5491 * * 5158 3506 1695 * 6084 55 0 * * * * * * 5964 0 0 T 56 3548 * 3386 2549 * 4441 * 5491 3182 6160 * 5096 * 2821 4583 2781 3357 * * * 56 0 * * * * * * 5964 0 0 Y 57 4875 4684 * * 3598 * 1934 * 4774 3926 * 5851 * 3792 5912 3586 3708 6180 * 2318 57 0 * * * * * * 5964 0 0 Y 58 4848 3084 * * 1982 * * * * 5441 * 5776 * * * 4819 * * * 950 58 41 * 5166 * * * * 5964 0 0 G 59 5902 * 4110 4492 * 1272 * * 4736 4363 * 4994 2555 * 4669 3654 4646 * * 5607 59 0 * * * * 0 * 5950 0 1776 E 60 3855 5441 6060 1405 * 3270 * 5528 4759 * 6028 5782 3102 4574 5021 3095 6233 * * * 60 0 * * * * * * 5964 0 0 E 61 4045 * 3814 2582 * 4684 * * 2208 * * 5153 4614 3099 3757 3345 4902 5851 * 4749 61 60 * 4622 * * * * 5964 0 0 Y 62 4603 * 4895 3363 5837 2822 * * 4547 4379 * 5738 5990 3060 3488 3714 * 5503 3666 2664 62 0 * * * * 0 * 5950 0 2223 A 63 399 * * * 5441 4276 * 3690 * * * * * * * 5528 5769 4335 * * 63 0 * * * * * * 5964 0 0 V 64 4090 * * 5864 * 4087 * 5916 5402 3165 3570 * * * 6021 * * 1952 1492 * 64 0 * * * * * * 5964 0 0 Q 65 4255 * 2395 2878 * 6077 * * 2307 * 3573 3086 * 5201 3782 4143 5172 5751 * * 65 0 * * * * * * 5964 0 0 L 66 3739 * * * * * * 2439 4115 2751 2771 * * * * * 4510 1539 * * 66 0 * * * * * * 5964 0 0 T 67 1807 * * * 5441 * * * * 5491 6122 * 4848 * * 4449 1130 3094 * * 67 0 * * * * * * 5964 0 0 L 68 4951 * * * 4261 * * 2631 4523 1331 * * 5871 5736 4986 5912 * 2125 * * 68 0 * * * * * * 5964 0 0 Q 69 4862 * 3313 2784 * 4241 4767 * 2944 5241 * 3261 * 3001 3772 2861 * * 5776 6007 69 0 * * * * * * 5964 0 0 V 70 6252 5487 * * 5871 4582 * 1042 * 3105 * * * * * * 3137 2396 * * 70 0 * * * * * * 5964 0 0 L 71 * * * * 1513 * * * * 814 * * * 5241 * * * * 4200 * 71 0 * * * * * * 5964 0 0 R 72 4291 * * 1845 * 4609 4838 * 2841 4281 * * * 3438 1886 5491 * * * 5751 72 0 * * * * * * 5964 0 0 A 73 2776 * 5862 4054 5513 6155 * 4651 1756 * 5461 3848 * 3218 3248 4425 5002 5506 * * 73 0 * * * * * * 5938 0 0 I 74 6002 * * * * * * 1673 5645 2984 1080 * * * * * 5528 5076 * * 74 0 * * * * * * 5938 0 0 N 75 * * 3839 5668 * 2787 4449 * 3296 * * 1000 4992 5974 4701 4966 * * * * 75 0 * * * * * * 5938 0 0 Q 76 4807 3721 * 5598 * * 6262 5682 4586 1544 6094 4969 * 2185 2748 * * * * 4824 76 0 * * * * * * 5923 0 0 R 77 * * 5082 4731 * * 5652 5682 2719 5496 3549 1955 * 4505 2710 3914 3497 5366 * * 77 0 * * * * * * 5923 0 0 L 78 4344 * 1533 2580 * 4881 4663 * 4118 4217 * 5093 5652 3841 5221 3486 5794 * * * 78 0 * * * * * * 5923 0 0 L 79 5665 * 5779 * * * * 5814 * 457 4803 * * * 5249 * 5424 2941 * * 79 0 * * * * * * 5923 0 0 A 80 1155 2426 * * 4969 * * 5746 * * 6390 * * * * 2413 * 4062 4789 5748 80 0 * * * * * * 5923 0 0 E 81 4224 * 3031 1091 * 4867 * 4592 3522 5911 6669 5945 * * 4831 * 3952 4342 * * 81 0 * * * * * * 5923 0 0 E 82 5814 * 6097 2675 * 5746 4659 * 2166 5366 3639 5997 * 2726 2289 * 6094 5846 * 5502 82 0 * * * * * * 5923 0 0 L 83 1922 * * * 4649 6190 * 3664 * 1084 * * * * * * 5860 3463 * 5368 83 33 * 5446 * * * * 5888 0 0 H 84 5343 5337 * 2114 * 5967 4079 * 2499 3896 6171 * * 2426 2649 * * 4611 * * 84 0 * * * * 0 * 5714 0 1000 R 85 4876 * 4738 2623 * * * * 1991 * * 5196 * 3473 1332 * * * * * 85 0 * * * * * * 5282 0 0 A 86 1528 * * 2513 * 3138 * 3942 2976 * * * * 3981 4186 * 4210 * * * 86 0 * * * * * * 4580 0 0 A 87 2354 * * 4056 * * * * 933 * * * * 3780 3810 * 3713 * * * 87 0 * * * * * * 4436 0 0 I 88 2267 * * * * * 3206 2209 3215 3145 * * * * * * * 2018 * * 88 0 * * * * * * 3875 0 0 Q 89 3180 * * * * * * * 2801 * * * * 1021 * 1981 * * * * 89 0 * * * * * * 3655 0 0 L 90 * * * * * * * 1717 * 523 * * * * * * * * * * 90 0 * * 0 * * * 1985 0 0 //