HHsearch 1.5 NAME c2mm9A_ FAM FILE c2mm9A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mm9A_.a3m DATE Sat Jul 26 08:26:52 2014 LENG 93 match states, 93 columns in multiple alignment FILT 101 out of 341 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.2 EVD 0.4331 0.5155 SEQ >ss_dssp CCCHHHHHHHHHHHTCSSSEEEEECSSSSSSCEEEEEECGGGTTCCHHHHHHHHTTTTHHHHHHSSCEEEEEEECTTTSCSSCSSGGGTSSCC >sa_dssp EBECECADDBADEDACEECCDBEBEDEEDBCCACACAAAEBADDDEEECBCEDACDCADEBCEDBECBDCEDBDADDDCDEEDCDCEEEEDEE >ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHCCHHHHHHHCCCCCCCCCCC >ss_conf 958899999998428951899998059898269999971456799978999999999999950133130021078789974005752343469 >Consensus MxxxexIxxxLxxxlxxxxlxVxdxSxgxgxHfxvxVVSxxFxGxsxvxRHrlVyxxLxxeixxiHALsixktxTpxEwxxxxxxxxxxxxxx >c2mm9A_ MVTKEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLERHRMVNAALEEEMKEIHALSIKKAQTPQQWKPPSQDSATLTKDA >UniRef50_B9LRQ6(8-95:107) BolA family protein n=4 Tax=Halobacteriaceae RepID=B9LRQ6_HALLT E=3e-10 s/c=0.75 id=26% cov=92% ----DLIEDGIPDAVARVTTPRVHDDEDEDAHFAAWVVSPAFEGESLVDQHQRVYDAVGDHMtRSVHALEI-KTYTPEDY--AEHGDGALNDD- >UniRef50_A1U3N4(10-101:127) Transcriptional regulator BolA n=14 Tax=Gammaproteobacteria RepID=A1U3N4_MARAV E=5e-19 s/c=1.03 id=29% cov=92% MKVQESIEEKLVAGFNASVISVENEShmhsvpPNSETHFKVTLVSADFEGQMKVRRHQAIYKVLADELAGpVHALAL-HLYTPEEWTASGQAS------- >UniRef50_Q89AF0(1-79:79) Uncharacterized protein bbp_348 n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=Y348_BUCBP E=7e-11 s/c=0.86 id=26% cov=84% MTITNTIKSLLKKKIPLTVIHVT----GDNKHINITAVSDIFNNINTLRRQQIIYKPLMPYIinKTLHAISI-KTYSLQEWKNK----------- >UniRef50_D0RQ54(1-82:86) Transcriptional regulator BolA n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQ54_9RICK E=3e-07 s/c=0.69 id=28% cov=76% MNAETLIKKKLLNNLGINEVEVVNNShlhqnhqqspNNGISHFKLIIKDKQLSELPKVKSHQKIYSCLSEEMKSfIHALEI------------------- ---- >UniRef50_Q6FIS0(40-108:114) Similar to uniprot|P39724 Saccharomyces cerevisiae YAL046c n=1 Tax=Candida glabrata RepID=Q6FIS0_CANGA E=9e-16 s/c=1.22 id=31% cov=73% ---EKRIYEKLSKAFNTTDLRVQDVSGGCGSMYAIDVTSDKFNTLTTIKQHQMVNEILKEDIPKWHGLQL----------------------- >UniRef50_A4A5D2(1-80:80) BolA-like protein n=4 Tax=unclassified Gammaproteobacteria RepID=A4A5D2_9GAMM E=1e-10 s/c=0.84 id=30% cov=85% -MDAKTVEAMVREALVDATVSVE----GAGANYDITVVSDAFADMRAVRRQQTVYAAINQAIAsgSIHAVNI-RALTPAEWESEGA--------- >UniRef50_Q9ZCE4(3-77:77) Uncharacterized protein RP812 n=15 Tax=Rickettsia RepID=Y812_RICPR E=7e-08 s/c=0.78 id=28% cov=81% -ISAEELEKILKKSFPSSVIKITDL-VGDQDHYALEISDAQFNGLSLINQHKLVKNALSEILnKKLHSISIKTISIP----------------- >UniRef50_Q3YSS0(1-90:97) BolA-like protein n=6 Tax=canis group RepID=Q3YSS0_EHRCJ E=9e-10 s/c=0.72 id=30% cov=87% MDIIQKIENKITSALNVLTLEITDESSKHNghnfhsisniSHLKIQVVSDDFLKTSKINRHKRLHKILEEEIKLTHSISFS-LYTKAEYQK--------- --- >UniRef50_A7NAL4(1-74:78) BolA-like protein n=17 Tax=Francisella RepID=A7NAL4_FRATF E=3e-06 s/c=0.71 id=25% cov=77% -MTKEQLKDILENSLKNCNADVQSD---NNVHFSATIIAEEFNDMpSKVKRQQLVYSKINKYIlsGELHAIAMKTIAT------------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 4634 0 0 V 2 5281 * 4728 * * 5797 * 4479 6216 3291 1572 4143 * 5975 * 2690 4896 2637 * * 2 0 * * * * * * 5358 0 0 T 3 4719 * 5109 5168 * * 5242 2520 6285 5170 * 3430 * 4566 3352 2561 2375 3865 * * 3 16 6546 * 1585 585 * * 5403 1000 0 K 4 2664 * * 2666 * 6481 * 4119 2358 5086 6621 6123 3670 3292 5044 3190 5398 5469 * * 4 16 6480 * 0 * * * 5418 1000 0 E 5 4294 * 2607 1551 * * * * 3727 6841 * 4120 * 2703 6657 4145 3890 6126 * * 5 0 * * * * * * 5524 0 0 Q 6 3983 * 4096 2394 * 6952 4613 6620 3342 3954 * 5447 * 2450 2888 5382 3851 6662 7006 6174 6 13 6755 * 1000 1000 * * 5481 1000 0 V 7 * * * * * * * 738 * 2382 3732 * * * * * * 2906 * * 7 16 6510 * 1585 585 * * 5489 1000 0 E 8 5251 * * 1573 * * 6290 3890 1896 * * 6253 * 3815 3186 5125 4440 6667 * 6612 8 0 * * * * * * 5489 0 0 A 9 2801 6666 2918 2294 * 5276 * 6065 3223 5371 * 3870 * 2562 5866 4038 5455 * * * 9 0 * * * * * * 5489 0 0 S 10 3759 * 6516 * * 5592 6976 3139 1730 2511 4170 * * 4607 2985 6073 5771 4640 * * 10 0 * * * * * * 5485 0 0 L 11 * * * * * * * 1676 * 694 * * * * * 6086 * 4212 * * 11 61 * 4603 * * * * 5492 0 0 T 12 6834 5745 * 2694 * * 5553 * 2521 3623 * 7170 5582 2615 2738 3973 3432 4504 * * 12 13 6840 * 1000 1000 0 * 5475 1000 2140 S 13 2653 6333 3249 2595 * 5036 * 5658 3101 5232 5298 4099 * 3783 4807 3227 4969 4897 * * 13 18 * 6328 * * * * 5491 0 0 K 14 2199 6035 5452 3301 6670 3496 5162 6380 3144 6753 * 4764 * 4760 3889 2830 4141 4528 * * 14 0 * * * * 0 * 5488 0 1000 L 15 6610 * 6389 * 2042 * * 2836 * 1055 4761 * * * * * * 3972 * 6248 15 0 * * * * * * 5491 0 0 K 16 3398 * 4149 3476 * 4361 6816 * 3187 * * 2886 2204 4158 * 2809 5083 6508 * * 16 45 5038 * 390 2078 * * 5491 1878 0 P 17 3557 4537 2860 4979 * 3913 * 3883 6088 4234 * 4997 1641 6248 5599 6728 5461 4033 * 5539 17 27 5758 * 0 * * * 5491 1591 0 I 18 2738 5278 5196 2855 6389 5987 5535 4142 4901 3618 * 6191 * 4135 * 3028 2574 3830 * 7261 18 34 5421 * 2941 201 * * 5491 1098 0 H 19 5247 * 4163 2568 3603 * 2811 5972 4438 4469 * 5491 * 4274 4482 4165 3453 3996 6088 3756 19 22 6020 * 0 * * * 5491 1579 0 L 20 4442 5194 * 6242 5870 * * 2438 * 1490 4712 * * 5295 * * 5599 1881 * * 20 36 * 5342 * * * * 5491 0 0 E 21 5050 * 3131 1736 * 6036 3915 4591 2925 * * 4748 5541 5378 4741 4301 4267 4527 * 4856 21 52 6200 5507 0 * * 0 5463 1000 1613 V 22 * * * * * * * 1776 * 3983 5146 * * * 5484 6174 * 785 * * 22 72 * 4365 * * * 0 5433 0 2367 I 23 6959 * 5494 2397 4764 6530 5401 3163 4471 5213 * 4863 * 4081 3812 7056 3235 2327 * 4403 23 171 4936 3654 2206 352 2778 227 5406 1898 3200 D 24 * 5984 759 4903 5968 * 4597 * * * * 2095 * * * 4445 * 5474 * * 24 124 5418 4081 1707 527 3638 121 5370 1591 3751 I 25 5224 * 2967 1806 6313 * * 3436 6495 2936 6031 5236 6356 5422 6578 * 5235 2486 * 5664 25 177 * 3113 * * 3059 184 5283 0 3996 S 26 4666 * 5360 * 5870 * * * * * 6255 * 3676 * * 407 3763 * * * 26 415 2290 4466 3015 190 1153 861 5246 3564 4336 G 27 3000 5212 3411 3532 * 2166 3560 * 4241 * * 4070 3641 4818 6491 4579 * 4519 * 4824 27 126 3580 * 3113 177 901 1106 5279 2827 4045 G 28 5692 * 3551 4713 * 811 * * 3593 5381 * 3536 * 7008 4433 4641 * * * * 28 99 4234 6264 2159 366 0 * 5380 2625 3357 C 29 4347 2366 2139 4230 * 3273 2667 * 5565 * 6695 4578 * 5476 6303 3974 4500 * * * 29 143 3552 6743 3133 175 0 * 5485 3071 1000 G 30 3608 * 4563 2163 * 1114 * 6182 6499 * * 3279 * 4540 * 6719 * 6628 * * 30 88 4077 * 3293 155 0 * 5489 2415 1000 S 31 3234 4617 3326 6814 * 3912 5209 6828 5567 * * 5712 * 4099 4829 1692 2760 6688 * 4590 31 0 * * * * * * 5491 0 0 S 32 4957 * * * 6894 * 527 * 4743 * 3523 4763 * 5448 * 3860 * * * 6333 32 0 * * * * * * 5491 0 0 F 33 * 5450 * * 792 * * 4668 * 3937 6102 * * * * * * 6334 4792 2109 33 32 5497 * 3163 171 * * 5491 1515 0 E 34 4140 6720 4110 2761 6610 4323 5157 * 1912 6795 * 4557 * 4261 2679 3487 6394 * * 6208 34 0 * * * * * * 5491 0 0 V 35 2816 * * * 6242 6718 * 1820 * 2439 6713 * * * * * 6394 1530 * * 35 0 * * * * * * 5491 0 0 E 36 5655 * 4503 4022 5415 * 7074 2810 4867 2742 * 5004 * 4634 3912 6660 2877 2373 5599 5671 36 0 * * * * * * 5491 0 0 V 37 3880 * * * * * * 1314 * 4231 6328 * * * * * * 1107 * * 37 0 * * * * * * 5491 0 0 V 38 5438 * * 4854 * 6795 7060 2889 5482 6687 * * * 5821 6618 5539 4167 613 * * 38 0 * * * * * * 5491 0 0 S 39 3221 * 4587 * * 5616 * * * * * * * * * 286 * * * 6531 39 0 * * * * * * 5491 0 0 E 40 3964 * 2095 2397 6701 * 6310 * 4416 * * 2955 2520 5118 5783 4400 4826 6618 * * 40 0 * * * * * * 5491 0 0 Q 41 2250 5433 4259 2867 6922 6531 5712 4558 3663 5608 * 5300 * 3153 3833 3623 6372 4180 * 4609 41 0 * * * * * * 5491 0 0 F 42 * * * * 73 * * 6042 * 4859 * * * * * * * * * * 42 0 * * * * * * 5491 0 0 E 43 2713 * 4158 2385 * 6816 * 4374 3925 5391 * 3357 * 3996 3612 3428 4262 3918 * * 43 0 * * * * * * 5491 0 0 G 44 6042 * 3027 5429 * 478 * * 4580 * * 4655 * * * 6506 5130 * * * 44 0 * * * * * * 5491 0 0 K 45 6723 6603 * 4214 * * * 4220 1471 1849 2827 * * 4278 * * 6123 5171 * * 45 14 6688 * 0 * * * 5491 1000 0 R 46 4658 * 5539 * * 6932 6527 * 5531 * 5994 3111 3592 6208 3292 1277 2683 * * * 46 0 * * * * * * 5491 0 0 L 47 5120 * * * 5550 * * 4552 3037 2019 3811 * 3390 5468 1860 6633 3973 * * * 47 0 * * * * * * 5491 0 0 L 48 * * * * * * * 2016 * 1709 * * 4512 * * * * 1311 * * 48 0 * * * * * * 5491 0 0 E 49 2514 * 3860 2784 * 6527 * * 1883 * * 3794 6792 2610 4577 6679 6506 5554 * * 49 0 * * * * * * 5491 0 0 R 50 * 6711 * * * * * 6208 4864 * * 6372 * 1973 654 4992 * 6821 * * 50 0 * * * * * * 5491 0 0 H 51 * * * 5321 * * 482 * * * * * * 2113 * 6222 * * 6102 * 51 0 * * * * * * 5491 0 0 R 52 * * * * * * * * 3273 * * * * 1619 809 * * * * * 52 0 * * * * * * 5491 0 0 M 53 3798 * * * 6682 * * 4863 3898 1364 1920 6248 * 5826 4266 * 4410 6771 5303 * 53 0 * * * * * * 5491 0 0 V 54 * * * * * * * 1894 * 4132 4818 * * * * * * 647 * * 54 0 * * * * * * 5491 0 0 N 55 * * * * 5222 * 3715 * 5167 4384 4989 1749 * * * * 5544 * * 1086 55 18 6328 * 2000 415 * * 5491 1000 0 A 56 2734 * 2800 2955 * 4007 6437 * 2703 * 5885 4104 * 4461 5470 2774 4043 * * * 56 0 * * * * * * 5491 0 0 A 57 1949 3559 * * * 6610 * 3428 6688 2447 6952 * 3693 6389 * 4568 3994 2877 5539 * 57 13 * 6812 * * * * 5491 0 0 L 58 * * * * 3954 * * 3447 * 393 4604 * * * * * * 4595 * * 58 13 6831 * 0 * 0 * 5490 1000 1000 E 59 2816 * 4715 3859 * 2958 5669 6431 2158 * 4785 4587 * 4310 5518 2939 4166 6828 6334 6701 59 0 * * * * * * 5491 0 0 E 60 4016 * 1648 1852 6609 5024 5507 5535 3967 * * 4895 3938 4912 * 4636 6477 6629 * * 60 0 * * * * * * 5496 0 0 E 61 4982 * 5805 1119 4329 6677 4114 4413 4375 3912 6590 * * 4229 5254 5597 * 4803 * 3945 61 11 * 7050 * * * * 5496 0 0 M 62 * * * * 2395 6311 * 1438 * 2434 2343 * * * * * * 4924 * 6239 62 296 2497 6907 533 1696 * 0 5477 4155 1000 K 63 2308 * 4129 5638 * 3499 * * 1864 * * 3797 4211 4107 5116 3705 4426 * * 5527 63 271 2547 * 619 1520 1000 1000 5490 4076 1362 E 64 5397 * 4070 2805 * 3458 4448 * 3576 6109 6055 3259 6986 3266 3571 2591 4404 * * 6672 64 605 1546 * 747 1306 0 * 5494 4720 1000 I 65 * * * * * * * 1211 * 1894 4385 * * * * * 6116 2310 4838 * 65 0 * * * * * * 5496 0 0 H 66 * * * * * * 31 * 5535 * * * * * * * * * * * 66 0 * * * * * * 5496 0 0 A 67 295 * * * * 3904 * * * * * * * * * 3243 6357 * * * 67 0 * * * * * * 5477 0 0 L 68 * * * * 3718 * * 2575 * 725 6711 * * * * * * 2988 6012 * 68 0 * * * * * * 5477 0 0 S 69 2555 * 5440 4095 * 6357 * * * * * 6504 * 3087 4821 1351 2475 * * * 69 65 * 4506 * * * * 5477 0 0 I 70 * 5353 * * 4655 * * 1045 * 2160 3076 * * 6692 5979 6527 * 4100 * 6126 70 1275 * 769 * * 0 * 5514 0 2156 K 71 * 4962 4958 5434 4994 * 5321 4219 2997 4190 * 5428 4669 2278 4268 3159 5365 4168 * 3184 71 558 5428 1748 0 * 32 5504 4973 1000 4950 K 72 5529 * * 5751 * * 2891 * 1290 * * * 5667 * 2816 * 2136 5227 * * 72 30 * 5599 * * 145 3391 5343 0 3800 A 73 1657 3803 * * * * * 5160 6167 3147 * * * * * 3759 1467 * * 5580 73 30 * 5583 * * 0 * 5412 0 1638 Q 74 4367 * * 6018 3528 * 5453 * 3771 3451 4576 * 6084 5639 3082 5881 * 5007 3828 1521 74 0 * * * * 0 * 5398 0 1465 T 75 4221 * 6194 * * 6322 * 5934 * 5164 * 5206 6371 * * 4598 352 * * 6378 75 0 * * * * * * 5392 0 0 P 76 5460 * * 5092 * * * 4589 4202 3809 * * 711 5360 * 3627 5352 4635 * * 76 0 * * * * * * 5374 0 0 Q 77 2446 * 2852 1606 * 4391 * 6349 3458 4671 * * * 3778 * 4361 5285 * * 6368 77 0 * * * * * * 5278 0 0 Q 78 6573 * 5322 481 * * * * 4792 * * * 5961 2487 * * 5855 * * * 78 0 * * * * * * 5204 0 0 W 79 3513 * * 5708 * * 4913 * * * * * * 4747 * * * 6099 731 2281 79 96 6142 4312 0 * * * 5122 1000 0 K 80 3898 * 3711 1726 * * * * 2279 * * 3360 * 3142 5732 4714 3633 * * * 80 80 4730 5946 3170 170 982 1018 5007 1196 1700 P 81 2282 * 5784 4596 * 5523 * 5195 2054 5583 5719 4201 4279 3992 3806 2761 5838 * * * 81 42 5127 * 1000 1000 0 * 4965 1000 1661 P 82 2493 * * 4107 * * * * 1446 * * 3484 3635 2824 4478 4599 * * * * 82 0 * * * * * * 4898 0 0 S 83 2732 4351 * 4499 * 2753 * * 4256 * * 1830 5285 3980 4879 3083 4905 * * * 83 0 * * * * * * 4618 0 0 Q 84 3389 * * 3164 * * 4294 * 2371 * * * 4684 1869 2540 3964 * * * * 84 0 * * * * * * 4487 0 0 D 85 4714 * 2526 4388 * 2582 * * 3362 * * 2222 * * 3351 * 2609 * * * 85 0 * * * * * * 4298 0 0 S 86 3470 3926 3789 4003 * 3738 * * 4083 4436 * * * * 3996 1539 * 4012 * 4051 86 0 * * * * * * 4100 0 0 A 87 1533 * * * * 1510 * 2805 * * * * * * * 3678 * 3607 * * 87 0 * * * * * * 3879 0 0 T 88 3260 * * * * * * * * * * 2407 * 3275 * 2152 1401 * * * 88 0 * * * * * * 3574 0 0 L 89 * * * * * * * 1116 * 1946 * * * 2803 * * * 2880 * * 89 0 * * * * * * 3171 0 0 T 90 * * 1300 2324 * * * * * * * 2260 * * * * 2431 * * * 90 0 * * * * * * 2765 0 0 K 91 * * 571 * * * * * 1614 * * * * * * * * * * * 91 0 * * * * * * 2049 0 0 D 92 * * 0 * * * * * * * * * * * * * * * * * 92 0 * * * * * * 2049 0 0 A 93 0 * * * * * * * * * * * * * * * * * * * 93 0 * * 0 * * * 1000 0 0 //