HHsearch 1.5 NAME c2mkdA_ FAM FILE c2mkdA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mkdA_.a3m DATE Sat Mar 22 08:13:36 2014 LENG 60 match states, 60 columns in multiple alignment FILT 44 out of 48 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4378 1.0292 SEQ >ss_dssp CCCCCCCCTTTSCCCCCEEETTTTEEECSHHHHHHHTTSHHHHHHHHHHHHHHHHTCCCC >sa_dssp EEDEEEEEDEEEEEBDEDDBEDBECEBDDCEDBEEBDECEEBDEDCEEDDEEEEEDEEEE >ss_pred CCCHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >ss_conf 960242120766779888418743112688886775310467877999999999512579 >Consensus sxkxxxxxxxxdxxdxnkyCxlCxxxFnspxvAqsHyxGKxHxKnxxkxklxxxxgxxxd >c2mkdA_ STKVEALHQNREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLAD >UniRef50_Q4V8W9(102-153:492) Sperm protamine-P1 n=2 Tax=Danio rerio RepID=Q4V8W9_DANRE E=2e-14 s/c=1.55 id=38% cov=88% --------QGVDLSDPNKYCPLCSASFNNPLVAQQHYSGRKHQRNQARQDMLDQMGEKSE >UniRef50_A7RQ90(113-142:450) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RQ90_NEMVE E=5e-05 s/c=1.63 id=50% cov=50% -------------LDPDTHCPLCKKWFNSRVQADSHYSGKAH------------------ >UniRef50_B4JE80(591-629:637) GH10419 n=1 Tax=Drosophila grimshawi RepID=B4JE80_DROGR E=0.0007 s/c=1.15 id=32% cov=67% -----------DDVNANYYCELCNKTLNHKKSAQQHVEGRAHSKKLERNK---------- >UniRef50_UPI00014F72FC(140-177:226) UPI00014F72FC related cluster n=1 Tax=Gallus gallus RepID=UPI00014F72FC E=2e-09 s/c=1.67 id=49% cov=65% ------------------YCWLCCVPFNSPFSAQEHYVGKKHGKNVARKKVMEELG---- >UniRef50_Q6C2A2(274-320:548) YALI0F09493p n=1 Tax=Yarrowia lipolytica RepID=Q6C2A2_YARLI E=0.0007 s/c=0.96 id=35% cov=52% --------------NPELFCKFCDKQFTNQAVYDNHLPGKKHKK---------------- >UniRef50_Q9UL40(117-162:294) Zinc finger protein 346 n=17 Tax=Eutheria RepID=ZN346_HUMAN E=3e-10 s/c=1.45 id=36% cov=75% TKKLDSDQKSSRSKDKNQCCPICNMTFSSPVVAQSHYLGKTHAK---------------- >UniRef50_C5DR22(274-317:506) ZYRO0B04950p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DR22_ZYGRO E=8e-07 s/c=1.24 id=39% cov=63% ------------------YCVACGKWFKTPTVFQSHLTGKHHRNNRDKRftKLQAEY----- >UniRef50_UPI000179E2B5(81-134:260) zinc finger, matrin type 1 isoform 1 n=1 Tax=Bos taurus RepID=UPI000179E2B5 E=8e-11 s/c=1.26 id=45% cov=73% --KMKMDEHRSEVVDRNKFCGLCHMVFSSSVVAQSHYVGKVHSKK--------------- >UniRef50_A3LZB0(272-322:530) Predicted protein n=1 Tax=Pichia stipitis RepID=A3LZB0_PICST E=0.0008 s/c=0.88 id=33% cov=85% SPKEEpATRDGVENESGEVYCSVCQKVFAKISVYQGHLNGKKHKKNAKELQ---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * 3005 * * * 787 1757 * * * 1 0 * * * * * * 2504 0 0 T 2 * * * * * * * * 2832 * * 2897 1435 * * 2001 3244 * * * 2 0 * * * * * * 2668 0 0 K 3 * * * * * * * * 470 * * * * 3591 * * 3280 3440 * * 3 0 * * * * * * 2790 0 0 V 4 1699 * * 2911 * * * * * 2467 3200 * * * * * * 1892 * * 4 0 * * * * * * 2790 0 0 E 5 3280 * 2467 1075 * * * * 3200 * * * * * * * 2913 * * * 5 206 2911 * 0 * * * 2790 1000 0 A 6 1737 * * 2913 * * * * * * 3200 * * * * 1873 3280 3601 * * 6 0 * * * * * * 2790 0 0 L 7 * * 2322 * * * * 2913 1812 2586 * * * * * * 2911 3591 * * 7 0 * * * * * * 2790 0 0 H 8 * * * 1725 * * 3667 * * * * * 3695 1630 3037 3371 * * * * 8 0 * * * * * * 2830 0 0 Q 9 * * 1207 2808 * * 3783 * 3926 * * * * 2240 * 3756 * * * * 9 0 * * * * * * 2756 0 0 N 10 * * 3831 * * 1278 * * * * * 1769 * * 4128 2583 * * * * 10 0 * * * * * * 2827 0 0 R 11 3883 * * 3197 * * * * 3183 * * 3097 * * 4153 1957 4181 2138 * * 11 90 4052 * 0 * * * 2822 1000 0 E 12 * * 890 2498 * 3616 4568 * * * * 4673 * * 3053 * * * * * 12 0 * * * * * * 3025 0 0 M 13 * * 2920 4792 * 2799 4640 5164 * 3361 3710 2396 4549 * * 4891 3197 3818 * * 13 0 * * * * * * 3041 0 0 I 14 * * 4967 2251 * * * 4993 2442 4310 * 4033 * * * 3412 3355 2063 * * 14 0 * * * * * * 3101 0 0 D 15 * * 495 * * * * * * * * 2576 * 3922 * 4138 * * * * 15 0 * * * * * * 3032 0 0 P 16 3623 * * 4768 * 3026 * * 2934 * * * 1567 * 2381 3829 5127 * * * 16 0 * * * * * * 3032 0 0 D 17 4957 * 2230 2364 * * * * * * * 1075 * * * 4111 * * * 5165 17 0 * * * * * * 3004 0 0 K 18 * * 5056 * * * 4287 4286 981 4221 * * * 5631 2840 * 4652 4570 * 3928 18 0 * * * * * * 3001 0 0 F 19 5692 3216 * * 1766 * 5054 * * * * * * * 5087 * * 4464 * 1076 19 0 * * * * * * 3138 0 0 C 20 * 0 * * * * * * * * * * * * * * * * * * 20 0 * * * * * * 3138 0 0 S 21 5860 5875 4867 3171 * 4392 5639 * 2185 * * 4792 2823 5250 5308 2439 4747 4306 4978 * 21 0 * * * * * * 3138 0 0 L 22 2949 * * * 3709 * * 3540 * 779 4869 * * * * * * 3458 * * 22 0 * * * * * * 3138 0 0 C 23 * 0 * * * * * * * * * * * * * * * * * * 23 0 * * * * * * 3138 0 0 H 24 3161 4382 3540 * * 3437 3559 * 5054 * * 1400 5950 4089 * 3425 * * * * 24 0 * * * * * * 3138 0 0 A 25 2105 * * * * * * * 1850 * 1684 * * * 4693 5491 * 3084 * * 25 0 * * * * * * 3138 0 0 T 26 * * * * 5654 * * 4280 4489 5408 4800 * 4978 4724 * 2635 1830 3246 2501 5017 26 0 * * * * * * 3138 0 0 F 27 * * * * 182 * * * * 3075 * * * * * * * * * * 27 0 * * * * * * 3138 0 0 N 28 4074 * * * * * * * 3486 * * 1194 * * * 1722 3736 4792 * * 28 0 * * * * * * 3138 0 0 D 29 * * 5750 * * * 4278 * 3334 * * 1840 * * * 1113 3486 * * * 29 0 * * * * * * 3138 0 0 P 30 3195 * * 4199 * * 5308 5133 3718 * * * 776 4724 5054 4187 * * * * 30 0 * * * * * * 3138 0 0 V 31 3384 * * * 4978 4792 5035 4753 4278 2461 5308 * * 5012 5087 3003 3440 2101 * * 31 0 * * * * * * 3138 0 0 M 32 * * * * * * 5340 5728 * * 2309 * * 4033 * 3586 5035 786 * * 32 0 * * * * * * 3138 0 0 A 33 385 * * * 3486 * * * * * * * * * * * * * * 2784 33 0 * * * * * * 3138 0 0 Q 34 * * 3187 3265 * * * * 3705 3380 * * * 849 * * 4096 * * * 34 0 * * * * * * 3138 0 0 Q 35 4373 * * 4978 * 3576 * * * * * 4724 * 1646 * 1116 5845 * * * 35 0 * * * * * * 3138 0 0 H 36 * * * * * * 0 * * * * * * * * * * * * * 36 0 * * * * * * 3138 0 0 Y 37 * * * * * * * * * 1886 * * * * * * * 4278 * 561 37 0 * * * * * * 3138 0 0 V 38 5491 * 4477 2814 * * * 5436 * 3801 * 3499 4724 2622 4792 3275 4306 2204 * * 38 0 * * * * * * 3138 0 0 G 39 * * * * * 0 * * * * * * * * * * * * * * 39 0 * * * * * * 3138 0 0 K 40 * * * * * * * * 202 * * * * * 2934 * * * * * 40 0 * * * * * * 3138 0 0 K 41 3615 * * * * * 4306 3217 1168 * * 4373 5340 * * * 3470 2716 * * 41 0 * * * * * * 3138 0 0 H 42 * * * * * * 0 * * * * * * * * * * * * * 42 0 * * * * * * 3138 0 0 R 43 1590 * * * * 3915 * 5407 1806 * * * * 3618 3077 3444 * * * * 43 0 * * * * * * 3112 0 0 K 44 * * * * * * * * 353 * * 4290 * * 2592 * * * * * 44 33 * 5480 * * * * 3112 0 0 Q 45 * * * * * * 5262 * 2115 * * 908 * 3211 3289 * * * * * 45 0 * * * * * 0 3012 0 1000 E 46 2386 * * 2354 * * * 4762 * 2549 2473 * * 4117 3914 4295 * 4308 * * 46 0 * * * * * 0 3096 0 1000 T 47 2125 * 3914 3523 * * * * 4194 4295 * 4780 * * 2704 2455 2840 * * * 47 0 * * * * 0 * 3096 0 1000 K 48 * * * 4239 * * * * 1179 * * * * 3706 1222 * * * * * 48 0 * * * * * * 3148 0 0 L 49 4184 * * * * * 5210 * 3281 2483 5060 3541 * 2038 2610 * 4766 3711 * * 49 105 3834 * 1000 1000 * * 3114 1000 0 K 50 5041 * 4205 3564 * 3381 5142 * 953 * * * * 3250 3558 * * * * * 50 0 * * * * * * 3104 0 0 L 51 * * * * 4525 * * 4214 * 418 3548 * * * * * * 3869 * * 51 0 * * * * * * 2711 0 0 M 52 * * * * * * * 4464 * 1457 1408 * * 2228 * * * * * * 52 0 * * * * * * 2680 0 0 A 53 1781 * 3456 1266 * * * * * * * * * * * 3007 3687 * * * 53 0 * * * * * * 2581 0 0 R 54 * * * 2103 * * 4332 3687 * * * * * 1265 3270 * 3057 * * * 54 0 * * * * * * 2581 0 0 Y 55 * * * * 3716 * * * * 1564 3321 * * * * * * * * 1042 55 0 * * * * * * 2385 0 0 G 56 3438 * * * * 140 * * * * * * * * * * * * * * 56 0 * * * * * * 1983 0 0 R 57 * * * 2506 * 3020 3104 * 2165 * * * * * 1983 * 3206 * * * 57 0 * * * * * * 1885 0 0 L 58 * * * * * * * * 2506 2877 * * * * * 2017 1182 * * * 58 0 * * * * * * 1885 0 0 A 59 2877 * * * * * * * 3014 1595 * * 2101 * * 2506 * * * * 59 0 * * * * * * 1885 0 0 D 60 * * 321 2328 * * * * * * * * * * * * * * * * 60 0 * * 0 * * * 1843 0 0 //