HHsearch 1.5 NAME c2mk6A_ FAM FILE c2mk6A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mk6A_.a3m DATE Sat Feb 14 08:20:33 2015 LENG 90 match states, 90 columns in multiple alignment FILT 74 out of 78 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.9 EVD 0.4475 1.3329 SEQ >ss_dssp CEEEECSSSCEEEEEEHHHHHHTTCCHHHHHHSSHHHHHHHHHHHHTTHHHHTTTCSSCEEEEEEECSSEEEEEEEEGGGGSSCTTCCCC >sa_dssp CEDDDEDEBBACACACCECAEEDECDEDDACEDEEEBDCABDDABEEBDEDBEEBEEDDDEDEDDEDEEABCACACBDCEDEEEEEEEEE >ss_pred CCCEEECCCEEEEEECHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHCCC >ss_conf 921584598799998088897649869996259678999999999996431382755828999997599589999836881457763049 >Consensus MkiErInentIrvxisxxDLxxRgixxxdlxxxxxkxxxlFxxmleeaxxexgFxxxgxlxievxpxxxGlxlxITkxxxxxdldxxxxx >c2mk6A_ MEIERINEHTVKFYMSYGDIEDRGFDREEIWYNRERSEELFWEVMDEVHEEEEFAVEGPLWIQVQALDKGLEIIVTKAQLSKDLDKLVPR >UniRef50_C4L6L3(1-84:192) Negative regulator of genetic competence n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L6L3_EXISA E=1e-05 s/c=0.61 id=24% cov=93% MRFEKQTKEHLRVYVTANELSLRGIAIDTIVG--ENGQQLWKELLETAESEYGFSPQGAVDLNVTMFPrDGLVIDVQKGEAIAELD----- >UniRef50_C4G9B9(1-84:286) Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G9B9_9FIRM E=3e-12 s/c=0.87 id=18% cov=92% MKFKKISDNAIRCTITADEMSSYDIQLDDLLEDRKKAETFLRYVLEEAREEVNFtASEEALSVQLSVMPGGdVSMMISGGQEES-------- >UniRef50_B0THV0(1-78:206) Putative uncharacterized protein n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0THV0_HELMI E=2e-09 s/c=0.81 id=18% cov=86% MRIETLGEGRIQVLVSSEDLSQREINIRDLWQYNPNAQKFLSGALREAVDNGVLQMpAGSVSVEAIGLvTEGVAVILT-------------- >UniRef50_C1PEX4(22-104:202) Negative regulator of genetic competence n=1 Tax=Bacillus coagulans 36D1 RepID=C1PEX4_BACCO E=7e-15 s/c=0.98 id=17% cov=93% MKLERISSNKIKYSITFEELSERGIMENDL--DSPIWNHLFEEMLELADQAYHVGESDMLTIEIYSFNVQELVFILTVGEADDAD----- >UniRef50_C0EYF9(22-113:309) Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EYF9_9FIRM E=6e-24 s/c=1.21 id=26% cov=101% MKLEKLSDTQIRCTLSKEDLSQRQLHLSELAYGSEKAKELFRDMMQQASIELGFEADNiPLMIEAIPiSNDCLVLVVTKVEDPDELDTRFSR >UniRef50_Q04ER4(1-86:241) Negative regulator of genetic competence, sporulation and motility n=2 Tax=Oenococcus oeni RepID=Q04ER4_OENOB E=5e-18 s/c=1.07 id=20% cov=96% MKLEKIDANTLHIMLTKADLDDRHVSMMDLMSDRSEVESFFYSILDEADADHSFSNDDQVTFQILPTGQhGVELFISKIVDDPNVS----- >UniRef50_C0EE38(6-87:193) Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EE38_9CLOT E=5e-09 s/c=0.76 id=23% cov=82% --IEQLDKQTIKVTLSPGDMDGYELTYEEMDYNCPNTRRVILKLLQEIKTETKLDLSrGKLFIEAFPYaEGGCVLYI--------------- >UniRef50_C8PBR8(4-94:258) Competence negative regulator MecA n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PBR8_9LACO E=4e-13 s/c=0.83 id=25% cov=97% LKINRINENVIRVEISNDEIAEHGLSVLDFIKRTDKVRDFLMGIAKEVygkndDNDEEKHEEDLVSFEVMPSSEGLAIRIVRSPLSRDLDE---- >UniRef50_C4Z1K4(1-84:253) Putative uncharacterized protein n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z1K4_EUBE2 E=3e-10 s/c=0.79 id=17% cov=91% MEFKKIDDRKFQCRLNEEDLEDNNISLDDFFKNdTDKIHSLLEVVMEEAERNIGVTLSGEVMsLQLAPQPDhSILLTVSSGKDD--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 4406 70 * * * * * * * * * 1 0 * * * * * * 4993 0 0 E 2 * * 5108 1801 * * * * 1233 * * * * 5262 2211 * 5904 * * * 2 0 * * * * * * 4993 0 0 I 3 * * * * 2422 * * 1229 5589 2960 2823 * * * * * * 3661 * 5855 3 0 * * * * * * 5064 0 0 E 4 * * 6056 448 * * 6389 5541 3070 * * 5294 * 5645 4814 5780 * * * * 4 0 * * * * * * 5064 0 0 R 5 * * 5855 * * * 4871 * 1695 * * * * 3005 1033 * 5241 * * * 5 0 * * * * * * 5064 0 0 I 6 * * * * 5196 * * 795 * 1803 * * * 5187 * * * 3605 * * 6 0 * * * * * * 5064 0 0 N 7 5417 * 2956 5448 * 3441 * * 5196 * * 1141 * * * 2228 4699 * * * 7 0 * * * * * * 5064 0 0 E 8 6159 * 1690 1245 * * 6498 * 3708 * * * 5417 4391 6199 4414 5988 6676 * 6732 8 0 * * * * * * 5064 0 0 H 9 * * 3296 4569 * 3733 3909 * 6892 * * 920 * 5181 4927 5169 3773 * * 5956 9 0 * * * * * * 5064 0 0 T 10 5725 * * * * * 4192 * 2537 * * * * 2532 4326 6274 1021 5294 * * 10 0 * * * * * * 5064 0 0 V 11 * * * * 4217 * * 627 * 2820 6060 * * * * * * 2817 * * 11 0 * * * * * * 5064 0 0 K 12 * * * * * * 6159 * 1419 5693 * * * 3768 945 * * * * * 12 0 * * * * * * 5064 0 0 F 13 * 1985 * * 2980 * * 2297 * 4462 * * * * * * * 1533 * 5255 13 0 * * * * * * 5064 0 0 Y 14 6296 * 5448 5294 2476 * 5331 4140 * 3627 4426 5417 * * 4236 4093 1811 4056 * 3836 14 0 * * * * * * 5064 0 0 M 15 * * * * * * * 1179 * 1297 4497 * * * * * * 3222 * * 15 0 * * * * * * 5064 0 0 S 16 6072 * 3960 4808 * 5241 * * * * 6568 3128 * 4891 * 1552 1478 * * * 16 0 * * * * * * 5064 0 0 Y 17 4101 * 6900 3290 2945 * 6684 4372 2853 5828 5912 3270 4239 5525 3557 3723 * * * 2926 17 0 * * * * * * 5064 0 0 G 18 4073 * 1625 1766 5896 4735 6598 6060 5448 5304 * 4112 * 4424 6663 3863 * 6452 * * 18 0 * * * * * * 5064 0 0 D 19 * * 508 1751 * * * * * * * * * * * * * * * * 19 0 * * * * * * 5064 0 0 I 20 * * * * * * * 2958 * 392 3192 * * * * * * * * * 20 0 * * * * * * 5064 0 0 E 21 3064 * 3759 1759 * * * 4833 3977 4389 5900 6418 * 4917 6296 2279 4118 6839 * 5780 21 0 * * * * * * 5064 0 0 D 22 4236 * 2061 1498 * 4697 6056 5404 4684 5187 * * * 4462 5352 3871 4502 5196 * * 22 0 * * * * * * 5064 0 0 R 23 * * * * * * 4023 * 3975 5780 4791 4830 * * 545 * * * * 3323 23 0 * * * * * * 5064 0 0 G 24 * * 3324 3601 * 689 5092 * * * * 3215 * 4305 * 6673 * * * * 24 0 * * * * * * 5064 0 0 F 25 * * * * 3364 * * 1006 * 2230 4870 * * * * * 5044 3597 * 4487 25 0 * * * * * * 5064 0 0 D 26 4218 * 4288 4355 * 4210 5831 * 2882 4979 4348 2995 * 4401 4210 2587 2600 * * * 26 0 * * * * * * 5064 0 0 R 27 * * * 4348 4716 * * 2326 3449 1978 3051 * 5196 6335 3445 * * 3943 * 4294 27 0 * * * * * * 5064 0 0 E 28 4210 * 1943 2526 * 6837 * * 5303 2670 4426 4158 5693 * 4667 3089 5356 5808 * * 28 0 * * * * * * 5064 0 0 E 29 * * 955 1402 * * * * * * 5417 * * * * * 3603 * * * 29 0 * * * * * * 5064 0 0 I 30 * * * * 2622 * * 2814 * 790 4038 * * 5592 * * 5448 6335 * * 30 38 * 5255 * * * * 5064 0 0 W 31 2522 * 4269 * 3752 * * 3558 * 1985 4353 5137 * * * 6054 6251 5150 2129 * 31 24 5909 * 0 * * 0 5017 1000 1000 Y 32 * * * 4604 6480 1929 5067 5871 4048 * * * * 3867 4241 3854 6298 4431 * 1608 32 41 * 5150 * * 0 * 5017 0 1000 N 33 * * 2478 5590 * 2280 * * * * * 1267 4847 5449 4427 5393 5419 * * 5210 33 76 5689 4977 0 * * 0 5014 1000 1000 R 34 5228 5117 * * * 4905 3773 4964 4189 * * 5151 5639 3161 2608 2026 2461 * * * 34 0 * * * * 1000 1000 4927 0 1427 E 35 4357 * 2979 1722 6458 4565 * * 3152 5555 * * 2507 3783 5415 4012 * * * * 35 0 * * * * 0 * 5005 0 1000 R 36 4626 * 6729 3636 * * * 5255 1217 * 5448 3363 * 3553 2670 * * 4301 * * 36 0 * * * * * * 5064 0 0 S 37 2046 * * * * 3154 * 2164 * * 5956 * * * * 4124 2853 2830 3840 * 37 0 * * * * * * 5064 0 0 E 38 * * * 1580 * * 3059 * 2786 * * 5255 * 2028 3215 5541 * * * * 38 0 * * * * * * 5064 0 0 E 39 3947 * 2321 1903 * 4733 4713 * 4266 * 6839 4684 * 2681 5181 3476 5725 * * * 39 0 * * * * * * 5064 0 0 L 40 * * * * 1092 * * * * 1049 * * * * * * * 4394 * * 40 0 * * * * * * 5064 0 0 F 41 * * * * 502 * * 4349 * 2545 5015 * * * * * * * 5187 6072 41 0 * * * * * * 5064 0 0 W 42 * * * 3252 4261 * 3762 * 5187 4671 5294 4443 * 4916 2350 4285 6468 * 2878 2300 42 0 * * * * * * 5064 0 0 E 43 6296 * 2270 1709 * 4267 * * 4565 * * 4256 * 4589 * 2220 4891 5740 * 5725 43 0 * * * * * * 5064 0 0 V 44 5241 * * * * * * 1879 * 2011 1519 * * * * * * 3255 * * 44 0 * * * * * * 5064 0 0 M 45 5294 * * * 5780 * * 3802 * 1144 1368 * * * * * * 4485 * * 45 0 * * * * * * 5064 0 0 D 46 * * 2161 1341 * * * * 4074 4761 * 5003 * 3207 4127 3777 * * * 5988 46 0 * * * * * * 5064 0 0 E 47 * * * 824 * * * * 3945 4684 4927 * * 2455 4720 * 3966 * 6142 * 47 0 * * * * * * 5064 0 0 V 48 712 * * * * * * 4645 * 3969 4642 * * * * * * 2025 * * 48 62 5294 5899 2322 322 * * 5064 1000 0 H 49 4454 5408 1889 2811 * 4090 5512 6049 4222 * * 3982 * 6825 3803 3385 5442 4596 * 3936 49 0 * * * * * 0 5054 0 1000 E 50 3873 * 3403 2564 6937 * 6602 4660 5776 4527 4979 4204 5945 5240 5711 2985 3064 3376 * 4095 50 0 * * * * 0 * 5054 0 1000 E 51 5255 * 2556 887 * * 6060 * 6142 5693 * 3787 4870 3512 6452 * 6811 * * * 51 0 * * * * * * 5064 0 0 E 52 * * 3588 3431 2857 4775 2857 4254 * 3148 * 4062 * * * * 4257 2932 * 3278 52 0 * * * * * * 5057 0 0 E 53 * * 3689 3254 * 1106 5206 * 5174 * * 3881 * 3194 5804 4826 5201 5229 * 6151 53 32 5530 * 0 * * * 5057 1000 0 F 54 * * * * 457 * * 3835 5275 4201 * * * * * * 5641 3853 * 4977 54 49 4904 * 0 * * * 5057 1719 0 A 55 3294 * 2782 2134 6049 4015 4232 * 4024 5818 * 4826 * 3794 4324 3165 4873 6324 * * 55 38 5268 * 464 1863 * * 5057 1438 0 V 56 2476 * 3371 3352 4367 5057 6133 5118 4443 3133 3922 3955 3647 6047 * 5009 * 3956 5436 * 56 62 4579 * 0 * * * 5057 1713 0 E 57 3944 * 1991 2206 * 5201 * * * * * 2774 * 4748 * 2327 6452 4465 * * 57 41 5145 * 0 * * * 5057 1000 0 G 58 5101 * 1891 3627 * 1114 * * * * * 3837 * 4752 * 5552 * 5071 * * 58 253 2634 * 0 * * * 5025 2329 0 P 59 3002 * * 5683 5417 5678 * * 5145 4515 2881 * 1381 5003 5295 3339 3929 * * * 59 41 5153 * 0 * * * 5025 1155 0 L 60 * * * * 5613 * * 3544 * 1030 * * * * * 5873 * 1369 * * 60 0 * * * * * * 5025 0 0 W 61 3872 6501 4163 * 5145 * * * * 4104 2491 * * 5873 * 2384 1963 5999 3062 * 61 28 5683 * 0 * * * 5025 1000 0 I 62 * * * * 1643 * * 1586 * 3838 4884 * * * * * * 2041 * * 62 0 * * * * * * 5025 0 0 Q 63 * 5873 * 1214 5176 5487 5262 * * * * 5150 * 1276 4846 * * * * * 63 0 * * * * * * 5025 0 0 V 64 1675 * * * * * * 2689 * 3369 * * * * * * * 1201 * * 64 13 6787 * 0 * * * 5025 1000 0 Q 65 5683 * * 5873 3592 * 4339 2394 * 3634 2353 4773 6787 3860 * 5686 3079 4372 * 3964 65 0 * * * * * * 5025 0 0 A 66 2577 * * * 5176 5208 * 6787 * 5966 5150 * 797 5487 * 3429 6123 5686 * * 66 48 4931 * 0 * * * 5025 1423 0 L 67 6935 * 4775 * 2831 * * 5082 4745 2283 3795 3191 * 4544 5889 2966 3982 3614 * 5145 67 144 3397 * 447 1908 * * 5025 2653 0 D 68 * * 4083 2918 * 4907 * * 4098 * * 2863 1903 4690 4835 2344 4594 * * * 68 395 2061 * 0 * * * 5025 3285 0 K 69 * * 1843 2602 * 2995 6322 * 3487 * * 3300 * 3267 5568 4080 * 4517 * * 69 66 4476 * 0 * * * 4998 2029 0 G 70 * 4276 * 4365 * 478 * * 5780 * * * * 5018 5865 3341 5873 * * * 70 209 3162 5452 0 * * * 4951 2788 0 L 71 * 4880 * 4984 5036 * * 2485 * 1284 2951 * * * * * * 2433 * * 71 0 * * * * 0 * 4871 0 1000 E 72 3662 * 3726 1776 * * 4728 3442 * 3588 5159 * * 5016 * 4421 * 2089 * * 72 0 * * * * * * 4895 0 0 I 73 * * * * 5472 * * 2087 * 1163 4587 * * * * * * 1978 * * 73 0 * * * * * * 4895 0 0 I 74 * * 4084 * 2243 * * 1688 * 4012 4738 6466 * * 5119 * 3149 3266 * 3982 74 0 * * * * * * 4895 0 0 V 75 * * * * * * * 869 * 4233 * * * * * * * 1325 * * 75 0 * * * * * * 4895 0 0 T 76 * * * * * * * * * 4946 * * * 5016 5025 2088 642 5059 * * 76 0 * * * * * * 4799 0 0 K 77 * * 4969 * * 5235 * 6007 800 * * 6007 * 5593 2156 5143 4811 5218 * * 77 0 * * * * * * 4696 0 0 A 78 3000 * * 4903 * 2487 * 3112 * 4332 5777 3175 * * * 2999 * 2135 * 5950 78 0 * * * * * * 4676 0 0 Q 79 * * 3367 2293 * 3395 4713 6114 2499 6174 * 3218 3711 3767 * 6244 5157 4010 * * 79 0 * * * * * * 4704 0 0 L 80 3713 * 1788 3322 * * * 3997 5907 3340 3832 3790 3675 3708 * 6408 5610 6052 * 6455 80 0 * * * * * * 4698 0 0 S 81 3709 * 2500 2637 * 4771 * 4508 * 5453 4575 3847 2387 5672 * 3061 * 5682 * 5572 81 0 * * * * * * 4701 0 0 K 82 4433 * 1872 2062 * 3515 * * 2943 * 4726 5502 5354 6050 4574 3606 * * * * 82 0 * * * * * * 4641 0 0 D 83 5258 * 1064 1550 * * 5257 5624 * * * 3489 * 5746 * * * * * * 83 0 * * * * * * 4390 0 0 L 84 4235 * * * 3742 3492 * 3465 * 1008 5079 * * * * 5150 3358 4630 * * 84 0 * * * * * * 4278 0 0 D 85 * * 816 2646 * * * * * * * 3348 * 4968 * 2815 * * * * 85 0 * * * * * * 4225 0 0 K 86 * * * 1556 * * * * 3123 * * * * 3116 * 3244 1625 * * * 86 0 * * * * * * 3546 0 0 L 87 * * * * * * * 3243 3859 1190 * * * * 1369 * * * * * 87 0 * * * * * * 2928 0 0 V 88 * * * * 410 * * * * * * * * * * * * 2014 * * 88 0 * * * * * * 2159 0 0 P 89 * * * * * * * * * * * * 2014 * * 410 * * * * 89 0 * * * * * * 2159 0 0 R 90 * * * * * * * * * * * * * * 0 * * * * * 90 0 * * 0 * * * 2159 0 0 //