HHsearch 1.5 NAME c2mjkA_ FAM FILE c2mjkA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mjkA_.a3m DATE Sat Jan 25 08:12:58 2014 LENG 41 match states, 41 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.2 EVD 0.4504 1.5160 SEQ >ss_dssp CEESSCCTTSEEESSCCTTSEEEEETTSSSEEEECTTSCCC >sa_dssp EEBEECBEECECCEEBDEEBDCADBEECEDDAAACDECEDE >ss_pred CCEEECCCCCEECCCCCCEEEEEECCCCEEEEEECCCCCCC >ss_conf 93344685210037655226787469974999614566309 >Consensus lvlkycpkigycsxxcskxxiwaxsxxckxxccxpaxxkwk >c2mjkA_ LVLKYCPKIGYCSNTCSKTQIWATSHGCKMYCCLPASWKWK >UniRef50_P21376(2-40:40) Meleagrin n=5 Tax=Neognathae RepID=MELG_MELGA E=5e-08 s/c=1.51 id=65% cov=98% -VLKYCPKIGYCSSKCSKAEVWAYSPDCKVHCCVPANQKW- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 0 * * * * * * * * * * 1 0 * * * * * * 1000 0 0 V 2 * * * * * * * * * * * * * * * * * 0 * * 2 0 * * * * * * 1260 0 0 L 3 * * * * * * * * * 0 * * * * * * * * * * 3 0 * * * * * * 1260 0 0 K 4 * * * * * * * * 0 * * * * * * * * * * * 4 0 * * * * * * 1260 0 0 Y 5 * * * * * * * * * * * * * * * * * * * 0 5 0 * * * * * * 1260 0 0 C 6 * 0 * * * * * * * * * * * * * * * * * * 6 0 * * * * * * 1260 0 0 P 7 * * * * * * * * * * * * 0 * * * * * * * 7 0 * * * * * * 1260 0 0 K 8 * * * * * * * * 0 * * * * * * * * * * * 8 0 * * * * * * 1260 0 0 I 9 * * * * * * * 0 * * * * * * * * * * * * 9 0 * * * * * * 1260 0 0 G 10 * * * * * 0 * * * * * * * * * * * * * * 10 0 * * * * * * 1260 0 0 Y 11 * * * * * * * * * * * * * * * * * * * 0 11 0 * * * * * * 1260 0 0 C 12 * 0 * * * * * * * * * * * * * * * * * * 12 0 * * * * * * 1260 0 0 S 13 * * * * * * * * * * * * * * * 0 * * * * 13 0 * * * * * * 1260 0 0 N 14 * * * * * * * * * * * 1000 * * * 1000 * * * * 14 0 * * * * * * 1260 0 0 T 15 * * * * * * * * 1000 * * * * * * * 1000 * * * 15 0 * * * * * * 1260 0 0 C 16 * 0 * * * * * * * * * * * * * * * * * * 16 0 * * * * * * 1260 0 0 S 17 * * * * * * * * * * * * * * * 0 * * * * 17 0 * * * * * * 1260 0 0 K 18 * * * * * * * * 0 * * * * * * * * * * * 18 0 * * * * * * 1260 0 0 T 19 1000 * * * * * * * * * * * * * * * 1000 * * * 19 0 * * * * * * 1260 0 0 Q 20 * * * 1000 * * * * * * * * * 1000 * * * * * * 20 0 * * * * * * 1260 0 0 I 21 * * * * * * * 1000 * * * * * * * * * 1000 * * 21 0 * * * * * * 1260 0 0 W 22 * * * * * * * * * * * * * * * * * * 0 * 22 0 * * * * * * 1260 0 0 A 23 0 * * * * * * * * * * * * * * * * * * * 23 0 * * * * * * 1260 0 0 T 24 * * * * * * * * * * * * * * * * 1000 * * 1000 24 0 * * * * * * 1260 0 0 S 25 * * * * * * * * * * * * * * * 0 * * * * 25 0 * * * * * * 1260 0 0 H 26 * * * * * * 1000 * * * * * 1000 * * * * * * * 26 0 * * * * * * 1260 0 0 G 27 * * 1000 * * 1000 * * * * * * * * * * * * * * 27 0 * * * * * * 1260 0 0 C 28 * 0 * * * * * * * * * * * * * * * * * * 28 0 * * * * * * 1260 0 0 K 29 * * * * * * * * 0 * * * * * * * * * * * 29 0 * * * * * * 1260 0 0 M 30 * * * * * * * * * * 1000 * * * * * * 1000 * * 30 0 * * * * * * 1260 0 0 Y 31 * * * * * * 1000 * * * * * * * * * * * * 1000 31 0 * * * * * * 1260 0 0 C 32 * 0 * * * * * * * * * * * * * * * * * * 32 0 * * * * * * 1260 0 0 C 33 * 0 * * * * * * * * * * * * * * * * * * 33 0 * * * * * * 1260 0 0 L 34 * * * * * * * * * 1000 * * * * * * * 1000 * * 34 0 * * * * * * 1260 0 0 P 35 * * * * * * * * * * * * 0 * * * * * * * 35 0 * * * * * * 1260 0 0 A 36 0 * * * * * * * * * * * * * * * * * * * 36 0 * * * * * * 1260 0 0 S 37 * * * * * * * * * * * 1000 * * * 1000 * * * * 37 0 * * * * * * 1260 0 0 W 38 * * * * * * * * * * * * * 1000 * * * * 1000 * 38 0 * * * * * * 1260 0 0 K 39 * * * * * * * * 0 * * * * * * * * * * * 39 0 * * * * * * 1260 0 0 W 40 * * * * * * * * * * * * * * * * * * 0 * 40 0 * * * * * * 1260 0 0 K 41 * * * * * * * * 0 * * * * * * * * * * * 41 0 * * 0 * * * 1000 0 0 //