HHsearch 1.5 NAME c2mj2A_ FAM FILE c2mj2A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mj2A_.a3m DATE Sat Apr 26 08:12:37 2014 LENG 36 match states, 36 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.2 EVD 0.4727 2.7791 SEQ >ss_dssp CCCCSSHHHHHHHHHHHHHHHHHTCSSSCSCSCCCC >sa_dssp EEDDEEEECDDEDEDEDDEEEEEDECEECDEEEDEE >ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >ss_conf 975127889999999999999983583235652359 >Consensus twxgtkkraqrixifxlexllxfcxgedsvdgkxxq >c2mj2A_ TWSGTKKRAQRILIFLLEFLLDFCTGEDSVDGKKRQ >UniRef50_P14998(25-59:74) Agnoprotein n=129 Tax=Polyomavirus RepID=AGNO_POVBA E=5e-10 s/c=1.87 id=75% cov=100% TWTGTKKRAQRIFIFILELLLEFCRGEDSVDGKNK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * * 0 * * * 1 0 * * * * * * 1172 0 0 W 2 * * * * * * * * * * * * * * * * * * 0 * 2 0 * * * * * * 1172 0 0 S 3 * * * * * * * * * * * * * * * 1000 1000 * * * 3 0 * * * * * * 1172 0 0 G 4 * * * * * 0 * * * * * * * * * * * * * * 4 0 * * * * * * 1172 0 0 T 5 * * * * * * * * * * * * * * * * 0 * * * 5 0 * * * * * * 1172 0 0 K 6 * * * * * * * * 0 * * * * * * * * * * * 6 0 * * * * * * 1172 0 0 K 7 * * * * * * * * 0 * * * * * * * * * * * 7 0 * * * * * * 1172 0 0 R 8 * * * * * * * * * * * * * * 0 * * * * * 8 0 * * * * * * 1172 0 0 A 9 0 * * * * * * * * * * * * * * * * * * * 9 0 * * * * * * 1172 0 0 Q 10 * * * * * * * * * * * * * 0 * * * * * * 10 0 * * * * * * 1172 0 0 R 11 * * * * * * * * * * * * * * 0 * * * * * 11 0 * * * * * * 1172 0 0 I 12 * * * * * * * 0 * * * * * * * * * * * * 12 0 * * * * * * 1172 0 0 L 13 * * * * 1000 * * * * 1000 * * * * * * * * * * 13 0 * * * * * * 1172 0 0 I 14 * * * * * * * 0 * * * * * * * * * * * * 14 0 * * * * * * 1172 0 0 F 15 * * * * 0 * * * * * * * * * * * * * * * 15 0 * * * * * * 1172 0 0 L 16 * * * * * * * 1000 * 1000 * * * * * * * * * * 16 0 * * * * * * 1172 0 0 L 17 * * * * * * * * * 0 * * * * * * * * * * 17 0 * * * * * * 1172 0 0 E 18 * * * 0 * * * * * * * * * * * * * * * * 18 0 * * * * * * 1172 0 0 F 19 * * * * 1000 * * * * 1000 * * * * * * * * * * 19 0 * * * * * * 1172 0 0 L 20 * * * * * * * * * 0 * * * * * * * * * * 20 0 * * * * * * 1172 0 0 L 21 * * * * * * * * * 0 * * * * * * * * * * 21 0 * * * * * * 1172 0 0 D 22 * * 1000 1000 * * * * * * * * * * * * * * * * 22 0 * * * * * * 1172 0 0 F 23 * * * * 0 * * * * * * * * * * * * * * * 23 0 * * * * * * 1172 0 0 C 24 * 0 * * * * * * * * * * * * * * * * * * 24 0 * * * * * * 1172 0 0 T 25 * * * * * * * * * * * * * * 1000 * 1000 * * * 25 0 * * * * * * 1172 0 0 G 26 * * * * * 0 * * * * * * * * * * * * * * 26 0 * * * * * * 1172 0 0 E 27 * * * 0 * * * * * * * * * * * * * * * * 27 0 * * * * * * 1172 0 0 D 28 * * 0 * * * * * * * * * * * * * * * * * 28 0 * * * * * * 1172 0 0 S 29 * * * * * * * * * * * * * * * 0 * * * * 29 0 * * * * * * 1172 0 0 V 30 * * * * * * * * * * * * * * * * * 0 * * 30 0 * * * * * * 1172 0 0 D 31 * * 0 * * * * * * * * * * * * * * * * * 31 0 * * * * * * 1172 0 0 G 32 * * * * * 0 * * * * * * * * * * * * * * 32 0 * * * * * * 1172 0 0 K 33 * * * * * * * * 0 * * * * * * * * * * * 33 0 * * * * * * 1172 0 0 K 34 * * * * * * * * 1000 * * 1000 * * * * * * * * 34 0 * * * * * * 1172 0 0 R 35 * * * * * * * * 1000 * * * * * 1000 * * * * * 35 0 * * * * * * 1172 0 0 Q 36 * * * * * * * * * * * * * 0 * * * * * * 36 0 * * 0 * * * 1000 0 0 //