HHsearch 1.5 NAME c2micB_ FAM FILE c2micB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2micB_.a3m DATE Sat Dec 27 08:18:30 2014 LENG 41 match states, 41 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.0 EVD 0.4277 0.8294 SEQ >ss_dssp CCTTTTSSCSTHHHHHHHHHHHHHHHHHHHHHTTTCCCSCC >sa_dssp EEEEECEEEEDEEEDEEDDEDEDEEDEECEEEEEEDEEEEE >ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >ss_conf 97676665079999999999999999999987656530059 >Consensus xxxgxsxniiPiYcsiLaaVvvGLxayVafKxwxsckqkxq >c2micB_ MTRGTTDNLIPVYCSILAAVVVGLVAYIAFKRWNSSKQNKQ >UniRef50_UPI00017B3CC6(211-246:399) UPI00017B3CC6 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B3CC6 E=3e-11 s/c=1.92 id=81% cov=90% -----SDKLIPIYCSILAAVVVGLVAFIIFKRWNSCKQNKQ >UniRef50_UPI0000F2DD3E(243-275:449) PREDICTED: similar to Ngfr protein n=1 Tax=Monodelphis domestica RepID=UPI0000F2DD3E E=7e-07 s/c=1.67 id=65% cov=83% --------IIPIYCSLLAAVVVGLLAYVAFKCWRTCKQKQQ >UniRef50_Q6NUF1(218-253:392) LOC398134 protein (Fragment) n=8 Tax=Xenopus RepID=Q6NUF1_XENLA E=9e-10 s/c=1.79 id=68% cov=90% -----SKNIIPVYCSILAAVVVGLIAYVAFKCYTTCKQKKQ >UniRef50_Q5BJ06(205-240:392) Ngfrl protein (Fragment) n=4 Tax=Danio rerio RepID=Q5BJ06_DANRE E=2e-09 s/c=1.76 id=76% cov=90% -----SDNLIPIYTSILAAVLLGLVAFIIFKRWNSCKQNKQ >UniRef50_Q8CJ26(48-85:228) Death domain containing membrane protein NRADD n=14 Tax=Eutheria RepID=Q8CJ26_MOUSE E=2e-11 s/c=1.85 id=56% cov=95% ---GASSNIIPVYCALLATVILGLLAYVAFKCWRSHKQRQQ >UniRef50_C3ZT81(1745-1781:1914) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZT81_BRAFL E=1e-09 s/c=1.74 id=50% cov=93% ---ASGQNIIPVYCSIMGAVVVGLIVYVAVKRWKTCQKPQ- >UniRef50_UPI000194BAC7(327-360:399) PREDICTED: similar to chicken D-serine dehydratase, partial n=1 Tax=Taeniopygia guttata RepID=UPI000194BAC7 E=2e-09 s/c=1.88 id=49% cov=85% -------DIIPLYCALLAGLVEGLVAYVAFKCWGTCRRKRQ >UniRef50_Q4RI16(169-204:337) Chromosome 8 SCAF15044, whole genome shotgun sequence. (Fragment) n=9 Tax=Clupeocephala RepID=Q4RI16_TETNG E=1e-07 s/c=1.60 id=46% cov=90% ---GGSSNIL-AYVSVLAAVVLGLFIYVGYKCWRSCKQKR- >UniRef50_D1LXA8(211-247:404) p75 neurotrophin receptor-like protein n=1 Tax=Saccoglossus kowalevskii RepID=D1LXA8_SACKO E=2e-07 s/c=1.55 id=42% cov=93% ----SSSNVVPIYCSVLGAVIVGLLVYVACKRYKIWKNKQK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 T 2 * * * * * * * * * * * * * * * * 0 * * * 2 0 * * * * * * 1000 0 0 R 3 * * * * * * * * * * * * * * 0 * * * * * 3 0 * * * * * * 1000 0 0 G 4 1852 * * * * 468 * * * * * * * * * * * * * * 4 0 * * * * * * 1832 0 0 T 5 2389 * * * * 2321 * * * * * * * * * 1296 2310 * * * 5 0 * * * * * * 1956 0 0 T 6 * * * * * 2713 * * * * * * * * * 419 3328 * * * 6 0 * * * * * * 1976 0 0 D 7 * * 1653 * * * * * 3272 * * * * 2713 * 1231 * * * * 7 0 * * * * * * 1976 0 0 N 8 * * 2776 * * * * * 3439 * * 393 * * * * * * * * 8 0 * * * * * * 2074 0 0 L 9 * * * * * * * 712 * 1952 * * * * * * * 2932 * * 9 0 * * * * * * 2043 0 0 I 10 * * * * * * * 416 * 3063 * * * * * * * 2932 * * 10 184 * 3063 * * * * 2043 0 0 P 11 * * * * * * * * * * * * 0 * * * * * * * 11 0 * * * * 0 * 1950 0 1000 V 12 3063 * * * * * * 1402 * 2863 * * * * * * * 1456 * * 12 0 * * * * * * 2043 0 0 Y 13 * * * * * * * * * * * * * * * * * * * 0 13 0 * * * * * * 2043 0 0 C 14 * 352 * * * * * * * * * * * * * * 3366 3063 * * 14 0 * * * * * * 2043 0 0 S 15 2091 * * * * * * * * * * * * * * 386 * * * * 15 0 * * * * * * 2043 0 0 I 16 * * * * * * * 1150 * 1743 * * * * * * * 1996 * * 16 0 * * * * * * 2043 0 0 L 17 * * * * * * * * * 180 3095 * * * * * * * * * 17 0 * * * * * * 2043 0 0 A 18 411 * * * * 2011 * * * * * * * * * * * * * * 18 0 * * * * * * 2043 0 0 A 19 386 * * * * 2863 * * * * * * * * * * 3361 * * * 19 0 * * * * * * 2043 0 0 V 20 * * * * * * * * * 2863 * * * * * * * 213 * * 20 0 * * * * * * 2043 0 0 V 21 * * * * * * * 2131 * 3366 * * * * * * * 568 * * 21 0 * * * * * * 2043 0 0 V 22 * * * 2863 * * * * * 1671 * * * * * * * 866 * * 22 0 * * * * * * 2043 0 0 G 23 * * * * * 0 * * * * * * * * * * * * * * 23 0 * * * * * * 2043 0 0 L 24 * * * * * * * * * 0 * * * * * * * * * * 24 0 * * * * * * 2043 0 0 V 25 * * * * 3063 * * 2380 * 1774 * * * * * * * 1337 * * 25 0 * * * * * * 2043 0 0 A 26 661 * * * * * * 3063 * * * * * * * * * 2011 * * 26 0 * * * * * * 2043 0 0 Y 27 * * * * 2446 * * * * * * * * * * * * * * 292 27 0 * * * * * * 2043 0 0 I 28 * * * * * * * 1952 * * * * * * * * * 431 * * 28 0 * * * * * * 2043 0 0 A 29 521 * * * * 3063 * 2446 * * * * * * * * * * * * 29 0 * * * * * * 2043 0 0 F 30 * 2932 * * 661 * * * * * * * * * * * * 3095 * 3063 30 0 * * * * * * 2043 0 0 K 31 * * * * * * * * 0 * * * * * * * * * * * 31 0 * * * * * * 2043 0 0 R 32 * 1019 * * * * * * * * * * * * 981 * * * * * 32 0 * * * * * * 2043 0 0 W 33 * * * * * * * * * * * * * * * * * * 333 2279 33 0 * * * * * * 2043 0 0 N 34 * * * * * 2863 * * 2011 * * 1952 * * 1832 * 3736 * * * 34 0 * * * * * * 2043 0 0 S 35 * * * * * * * 2932 * * * * * * * 1073 1346 * * * 35 0 * * * * * * 2043 0 0 S 36 * 521 * * * * 3361 * * * * * * * * 3737 * * 2932 * 36 0 * * * * * * 2043 0 0 K 37 * * * * * * * * 424 * * * * 3095 2863 * * * * * 37 0 * * * * * * 2043 0 0 Q 38 * * * * * * * * 3095 * * 2932 * 702 2863 * * * * * 38 0 * * * * * * 2043 0 0 N 39 * * * * * * * * 924 * * 1952 3095 * 3361 * * * * * 39 0 * * * * * * 2043 0 0 K 40 * * * * * * * * 1584 * * * * 1289 1959 * * * * * 40 0 * * * * * * 2043 0 0 Q 41 * * * * * * * * 2311 * * * * 325 * * * * * * 41 0 * * 0 * * * 1873 0 0 //